data_5FTM # _model_server_result.job_id 7vCNsFz3bTE9fYBASIHECw _model_server_result.datetime_utc '2024-11-22 10:24:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ftm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":902}' # _entry.id 5FTM # _exptl.entry_id 5FTM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FTM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 N N N ? 3 Q N N ? 3 T N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 525 A THR 525 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 G O3B AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 G O1A AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc4 B OG1 THR 525 B THR 525 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 J O1A AGS . B AGS 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc6 J O3B AGS . B AGS 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc7 C OG1 THR 525 C THR 525 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc8 M O1A AGS . C AGS 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc9 M O3B AGS . C AGS 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc10 D OG1 THR 525 D THR 525 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc11 P O3B AGS . D AGS 901 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc12 P O1A AGS . D AGS 901 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc13 E OG1 THR 525 E THR 525 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc14 S O1A AGS . E AGS 901 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc15 S O3B AGS . E AGS 901 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc16 F OG1 THR 525 F THR 525 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc17 V O1A AGS . F AGS 901 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc18 V O3B AGS . F AGS 901 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FTM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 AGS A 1 901 901 AGS AGS . H 3 ADP A 1 902 902 ADP ADP . I 4 MG A 1 903 903 MG MG . J 2 AGS B 1 901 901 AGS AGS . K 3 ADP B 1 902 902 ADP ADP . L 4 MG B 1 903 903 MG MG . M 2 AGS C 1 901 901 AGS AGS . N 3 ADP C 1 902 902 ADP ADP . O 4 MG C 1 903 903 MG MG . P 2 AGS D 1 901 901 AGS AGS . Q 3 ADP D 1 902 902 ADP ADP . R 4 MG D 1 903 903 MG MG . S 2 AGS E 1 901 901 AGS AGS . T 3 ADP E 1 902 902 ADP ADP . U 4 MG E 1 903 903 MG MG . V 2 AGS F 1 901 901 AGS AGS . W 3 ADP F 1 902 902 ADP ADP . X 4 MG F 1 903 903 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 3 64.017 108.938 85.959 1 37.8 ? PB ADP 902 A 1 HETATM 2 O O1B ADP . . . H 3 64.379 109.332 84.572 1 41.79 ? O1B ADP 902 A 1 HETATM 3 O O2B ADP . . . H 3 64.574 109.807 87.028 1 31.68 ? O2B ADP 902 A 1 HETATM 4 O O3B ADP . . . H 3 64.17 107.479 86.225 1 34.38 ? O3B ADP 902 A 1 HETATM 5 P PA ADP . . . H 3 61.433 108.956 84.92 1 50.62 ? PA ADP 902 A 1 HETATM 6 O O1A ADP . . . H 3 61.161 110.197 84.14 1 38.58 ? O1A ADP 902 A 1 HETATM 7 O O2A ADP . . . H 3 61.887 107.713 84.218 1 63.56 ? O2A ADP 902 A 1 HETATM 8 O O3A ADP . . . H 3 62.467 109.27 86.086 1 33.89 ? O3A ADP 902 A 1 HETATM 9 O O5' ADP . . . H 3 60.113 108.639 85.753 1 43.59 ? O5' ADP 902 A 1 HETATM 10 C C5' ADP . . . H 3 59.121 107.822 85.161 1 44.86 ? C5' ADP 902 A 1 HETATM 11 C C4' ADP . . . H 3 57.773 107.974 85.842 1 41.92 ? C4' ADP 902 A 1 HETATM 12 O O4' ADP . . . H 3 57.888 108.638 87.088 1 32.8 ? O4' ADP 902 A 1 HETATM 13 C C3' ADP . . . H 3 56.817 108.801 85.028 1 39.11 ? C3' ADP 902 A 1 HETATM 14 O O3' ADP . . . H 3 55.747 107.948 84.669 1 62.93 ? O3' ADP 902 A 1 HETATM 15 C C2' ADP . . . H 3 56.218 109.792 85.969 1 34.3 ? C2' ADP 902 A 1 HETATM 16 O O2' ADP . . . H 3 54.828 109.54 85.953 1 37.08 ? O2' ADP 902 A 1 HETATM 17 C C1' ADP . . . H 3 56.718 109.397 87.321 1 30.57 ? C1' ADP 902 A 1 HETATM 18 N N9 ADP . . . H 3 57.097 110.555 88.124 1 33.73 ? N9 ADP 902 A 1 HETATM 19 C C8 ADP . . . H 3 58.254 110.665 88.744 1 141.91 ? C8 ADP 902 A 1 HETATM 20 N N7 ADP . . . H 3 58.342 111.817 89.428 1 31.78 ? N7 ADP 902 A 1 HETATM 21 C C5 ADP . . . H 3 57.201 112.459 89.247 1 29.71 ? C5 ADP 902 A 1 HETATM 22 C C6 ADP . . . H 3 56.644 113.729 89.69 1 29.75 ? C6 ADP 902 A 1 HETATM 23 N N6 ADP . . . H 3 57.347 114.554 90.483 1 32.38 ? N6 ADP 902 A 1 HETATM 24 N N1 ADP . . . H 3 55.417 114.038 89.278 1 31.15 ? N1 ADP 902 A 1 HETATM 25 C C2 ADP . . . H 3 54.718 113.22 88.496 1 31.73 ? C2 ADP 902 A 1 HETATM 26 N N3 ADP . . . H 3 55.167 112.051 88.059 1 30.57 ? N3 ADP 902 A 1 HETATM 27 C C4 ADP . . . H 3 56.382 111.62 88.394 1 28.2 ? C4 ADP 902 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #