data_5FTM
#
_model_server_result.job_id            lK9SN885zukBXLSX7bPVFA 
_model_server_result.datetime_utc      '2024-11-08 03:20:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ftm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":902}' 
#
_entry.id    5FTM 
#
_exptl.entry_id    5FTM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FTM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
? 3 N N N 
? 3 Q N N 
? 3 T N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 525 A THR 525 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 G O3B AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc3 G O1A AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc4 B OG1 THR 525 B THR 525 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc5 J O1A AGS . B AGS 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc6 J O3B AGS . B AGS 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc7 C OG1 THR 525 C THR 525 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc8 M O1A AGS . C AGS 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc9 M O3B AGS . C AGS 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc10 D OG1 THR 525 D THR 525 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc11 P O3B AGS . D AGS 901 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc12 P O1A AGS . D AGS 901 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc13 E OG1 THR 525 E THR 525 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc14 S O1A AGS . E AGS 901 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc15 S O3B AGS . E AGS 901 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc16 F OG1 THR 525 F THR 525 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc17 V O1A AGS . F AGS 901 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc18 V O3B AGS . F AGS 901 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5FTM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 AGS A 1 901 901 AGS AGS . 
H 3 ADP A 1 902 902 ADP ADP . 
I 4 MG A 1 903 903 MG MG . 
J 2 AGS B 1 901 901 AGS AGS . 
K 3 ADP B 1 902 902 ADP ADP . 
L 4 MG B 1 903 903 MG MG . 
M 2 AGS C 1 901 901 AGS AGS . 
N 3 ADP C 1 902 902 ADP ADP . 
O 4 MG C 1 903 903 MG MG . 
P 2 AGS D 1 901 901 AGS AGS . 
Q 3 ADP D 1 902 902 ADP ADP . 
R 4 MG D 1 903 903 MG MG . 
S 2 AGS E 1 901 901 AGS AGS . 
T 3 ADP E 1 902 902 ADP ADP . 
U 4 MG E 1 903 903 MG MG . 
V 2 AGS F 1 901 901 AGS AGS . 
W 3 ADP F 1 902 902 ADP ADP . 
X 4 MG F 1 903 903 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 3 92.209 126.458 85.96 1 37.8 ? PB ADP 902 B 1 
HETATM 2 O O1B ADP . . . K 3 92.731 126.341 84.573 1 41.79 ? O1B ADP 902 B 1 
HETATM 3 O O2B ADP . . . K 3 93.24 126.41 87.029 1 31.68 ? O2B ADP 902 B 1 
HETATM 4 O O3B ADP . . . K 3 91.022 125.596 86.226 1 34.38 ? O3B ADP 902 B 1 
HETATM 5 P PA ADP . . . K 3 90.932 128.705 84.921 1 50.62 ? PA ADP 902 B 1 
HETATM 6 O O1A ADP . . . K 3 91.871 129.561 84.141 1 38.58 ? O1A ADP 902 B 1 
HETATM 7 O O2A ADP . . . K 3 90.083 127.69 84.219 1 63.56 ? O2A ADP 902 B 1 
HETATM 8 O O3A ADP . . . K 3 91.721 127.966 86.087 1 33.89 ? O3A ADP 902 B 1 
HETATM 9 O O5' ADP . . . K 3 89.998 129.689 85.753 1 43.59 ? O5' ADP 902 B 1 
HETATM 10 C C5' ADP . . . K 3 88.794 130.14 85.161 1 44.86 ? C5' ADP 902 B 1 
HETATM 11 C C4' ADP . . . K 3 88.252 131.383 85.842 1 41.92 ? C4' ADP 902 B 1 
HETATM 12 O O4' ADP . . . K 3 88.884 131.616 87.088 1 32.8 ? O4' ADP 902 B 1 
HETATM 13 C C3' ADP . . . K 3 88.49 132.625 85.028 1 39.11 ? C3' ADP 902 B 1 
HETATM 14 O O3' ADP . . . K 3 87.216 133.125 84.669 1 62.93 ? O3' ADP 902 B 1 
HETATM 15 C C2' ADP . . . K 3 89.049 133.639 85.969 1 34.3 ? C2' ADP 902 B 1 
HETATM 16 O O2' ADP . . . K 3 88.136 134.717 85.953 1 37.08 ? O2' ADP 902 B 1 
HETATM 17 C C1' ADP . . . K 3 88.957 133.009 87.321 1 30.57 ? C1' ADP 902 B 1 
HETATM 18 N N9 ADP . . . K 3 90.149 133.259 88.124 1 33.73 ? N9 ADP 902 B 1 
HETATM 19 C C8 ADP . . . K 3 90.823 132.312 88.744 1 141.91 ? C8 ADP 902 B 1 
HETATM 20 N N7 ADP . . . K 3 91.864 132.812 89.428 1 31.78 ? N7 ADP 902 B 1 
HETATM 21 C C5 ADP . . . K 3 91.85 134.121 89.247 1 29.71 ? C5 ADP 902 B 1 
HETATM 22 C C6 ADP . . . K 3 92.671 135.239 89.69 1 29.75 ? C6 ADP 902 B 1 
HETATM 23 N N6 ADP . . . K 3 93.737 135.043 90.483 1 32.38 ? N6 ADP 902 B 1 
HETATM 24 N N1 ADP . . . K 3 92.325 136.456 89.278 1 31.15 ? N1 ADP 902 B 1 
HETATM 25 C C2 ADP . . . K 3 91.268 136.652 88.496 1 31.73 ? C2 ADP 902 B 1 
HETATM 26 N N3 ADP . . . K 3 90.48 135.679 88.059 1 30.57 ? N3 ADP 902 B 1 
HETATM 27 C C4 ADP . . . K 3 90.714 134.411 88.394 1 28.2 ? C4 ADP 902 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    84 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#