data_5FUC # _model_server_result.job_id EKC6xdYXW7lw4kDq8Q17dQ _model_server_result.datetime_utc '2025-03-06 02:19:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fuc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1299}' # _entry.id 5FUC # _exptl.entry_id 5FUC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.53 _cell.angle_gamma 90 _cell.entry_id 5FUC _cell.length_a 249.03 _cell.length_b 67.8 _cell.length_c 78.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FUC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PQS trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F,I,J,K,N,P 1 1 B,C,E,G,H,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 44 1_555 A SG CYS 32 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 55 A CYS 73 1_555 A SG CYS 65 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 26 B CYS 44 1_555 B SG CYS 32 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 55 B CYS 73 1_555 B SG CYS 65 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 C SG CYS 30 C CYS 102 1_555 C SG CYS 41 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 C SG CYS 74 C CYS 146 1_555 C SG CYS 85 C CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 D SG CYS 30 D CYS 102 1_555 D SG CYS 41 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 D SG CYS 74 D CYS 146 1_555 D SG CYS 85 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 E SG CYS 33 E CYS 33 1_555 E SG CYS 104 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf11 F SG CYS 22 V CYS 22 1_555 F SG CYS 96 V CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 F SG CYS 33 V CYS 33 1_555 F SG CYS 104 V CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 C ND2 ASN 130 C ASN 202 1_555 G C1 NAG . C NAG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 C ND2 ASN 154 C ASN 226 1_555 H C1 NAG . C NAG 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 D ND2 ASN 130 D ASN 202 1_555 I C1 NAG . D NAG 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 D ND2 ASN 154 D ASN 226 1_555 J C1 NAG . D NAG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5FUC _atom_sites.fract_transf_matrix[1][1] 0.004016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001041 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG C 1 1298 1298 NAG NAG . H 4 NAG C 1 1299 1299 NAG NAG . I 4 NAG D 1 1299 1299 NAG NAG . J 4 NAG D 1 1300 1300 NAG NAG . K 5 HOH A 1 2001 2001 HOH HOH . K 5 HOH A 2 2002 2002 HOH HOH . K 5 HOH A 3 2003 2003 HOH HOH . K 5 HOH A 4 2004 2004 HOH HOH . K 5 HOH A 5 2005 2005 HOH HOH . K 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH A 8 2008 2008 HOH HOH . K 5 HOH A 9 2009 2009 HOH HOH . K 5 HOH A 10 2010 2010 HOH HOH . K 5 HOH A 11 2011 2011 HOH HOH . K 5 HOH A 12 2012 2012 HOH HOH . K 5 HOH A 13 2013 2013 HOH HOH . K 5 HOH A 14 2014 2014 HOH HOH . L 5 HOH B 1 2001 2001 HOH HOH . L 5 HOH B 2 2002 2002 HOH HOH . L 5 HOH B 3 2003 2003 HOH HOH . L 5 HOH B 4 2004 2004 HOH HOH . L 5 HOH B 5 2005 2005 HOH HOH . L 5 HOH B 6 2006 2006 HOH HOH . L 5 HOH B 7 2007 2007 HOH HOH . L 5 HOH B 8 2008 2008 HOH HOH . L 5 HOH B 9 2009 2009 HOH HOH . L 5 HOH B 10 2010 2010 HOH HOH . L 5 HOH B 11 2011 2011 HOH HOH . L 5 HOH B 12 2012 2012 HOH HOH . L 5 HOH B 13 2013 2013 HOH HOH . L 5 HOH B 14 2014 2014 HOH HOH . L 5 HOH B 15 2015 2015 HOH HOH . L 5 HOH B 16 2016 2016 HOH HOH . L 5 HOH B 17 2017 2017 HOH HOH . L 5 HOH B 18 2018 2018 HOH HOH . L 5 HOH B 19 2019 2019 HOH HOH . L 5 HOH B 20 2020 2020 HOH HOH . L 5 HOH B 21 2021 2021 HOH HOH . L 5 HOH B 22 2022 2022 HOH HOH . L 5 HOH B 23 2023 2023 HOH HOH . L 5 HOH B 24 2024 2024 HOH HOH . M 5 HOH C 1 2001 2001 HOH HOH . M 5 HOH C 2 2002 2002 HOH HOH . M 5 HOH C 3 2003 2003 HOH HOH . M 5 HOH C 4 2004 2004 HOH HOH . M 5 HOH C 5 2005 2005 HOH HOH . M 5 HOH C 6 2006 2006 HOH HOH . M 5 HOH C 7 2007 2007 HOH HOH . M 5 HOH C 8 2008 2008 HOH HOH . M 5 HOH C 9 2009 2009 HOH HOH . M 5 HOH C 10 2010 2010 HOH HOH . M 5 HOH C 11 2011 2011 HOH HOH . M 5 HOH C 12 2012 2012 HOH HOH . M 5 HOH C 13 2013 2013 HOH HOH . M 5 HOH C 14 2014 2014 HOH HOH . M 5 HOH C 15 2015 2015 HOH HOH . M 5 HOH C 16 2016 2016 HOH HOH . M 5 HOH C 17 2017 2017 HOH HOH . M 5 HOH C 18 2018 2018 HOH HOH . M 5 HOH C 19 2019 2019 HOH HOH . M 5 HOH C 20 2020 2020 HOH HOH . M 5 HOH C 21 2021 2021 HOH HOH . M 5 HOH C 22 2022 2022 HOH HOH . M 5 HOH C 23 2023 2023 HOH HOH . M 5 HOH C 24 2024 2024 HOH HOH . M 5 HOH C 25 2025 2025 HOH HOH . M 5 HOH C 26 2026 2026 HOH HOH . M 5 HOH C 27 2027 2027 HOH HOH . M 5 HOH C 28 2028 2028 HOH HOH . M 5 HOH C 29 2029 2029 HOH HOH . M 5 HOH C 30 2030 2030 HOH HOH . M 5 HOH C 31 2031 2031 HOH HOH . M 5 HOH C 32 2032 2032 HOH HOH . M 5 HOH C 33 2033 2033 HOH HOH . M 5 HOH C 34 2034 2034 HOH HOH . N 5 HOH D 1 2001 2001 HOH HOH . N 5 HOH D 2 2002 2002 HOH HOH . N 5 HOH D 3 2003 2003 HOH HOH . N 5 HOH D 4 2004 2004 HOH HOH . N 5 HOH D 5 2005 2005 HOH HOH . N 5 HOH D 6 2006 2006 HOH HOH . N 5 HOH D 7 2007 2007 HOH HOH . N 5 HOH D 8 2008 2008 HOH HOH . N 5 HOH D 9 2009 2009 HOH HOH . N 5 HOH D 10 2010 2010 HOH HOH . N 5 HOH D 11 2011 2011 HOH HOH . N 5 HOH D 12 2012 2012 HOH HOH . N 5 HOH D 13 2013 2013 HOH HOH . N 5 HOH D 14 2014 2014 HOH HOH . N 5 HOH D 15 2015 2015 HOH HOH . N 5 HOH D 16 2016 2016 HOH HOH . N 5 HOH D 17 2017 2017 HOH HOH . N 5 HOH D 18 2018 2018 HOH HOH . N 5 HOH D 19 2019 2019 HOH HOH . N 5 HOH D 20 2020 2020 HOH HOH . N 5 HOH D 21 2021 2021 HOH HOH . N 5 HOH D 22 2022 2022 HOH HOH . N 5 HOH D 23 2023 2023 HOH HOH . O 5 HOH E 1 2001 2001 HOH HOH . O 5 HOH E 2 2002 2002 HOH HOH . O 5 HOH E 3 2003 2003 HOH HOH . O 5 HOH E 4 2004 2004 HOH HOH . O 5 HOH E 5 2005 2005 HOH HOH . O 5 HOH E 6 2006 2006 HOH HOH . O 5 HOH E 7 2007 2007 HOH HOH . O 5 HOH E 8 2008 2008 HOH HOH . P 5 HOH V 1 2001 2001 HOH HOH . P 5 HOH V 2 2002 2002 HOH HOH . P 5 HOH V 3 2003 2003 HOH HOH . P 5 HOH V 4 2004 2004 HOH HOH . P 5 HOH V 5 2005 2005 HOH HOH . P 5 HOH V 6 2006 2006 HOH HOH . P 5 HOH V 7 2007 2007 HOH HOH . P 5 HOH V 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 -12.669 20.831 45.5 1 70.53 ? C1 NAG 1299 C 1 HETATM 2 C C2 NAG . . . H 4 -11.522 21.777 45.067 1 74.44 ? C2 NAG 1299 C 1 HETATM 3 C C3 NAG . . . H 4 -10.352 21.699 46.072 1 75.82 ? C3 NAG 1299 C 1 HETATM 4 C C4 NAG . . . H 4 -10.842 21.833 47.533 1 76 ? C4 NAG 1299 C 1 HETATM 5 C C5 NAG . . . H 4 -11.979 20.833 47.782 1 74.43 ? C5 NAG 1299 C 1 HETATM 6 C C6 NAG . . . H 4 -12.56 20.905 49.184 1 73.8 ? C6 NAG 1299 C 1 HETATM 7 C C7 NAG . . . H 4 -11.299 22.116 42.675 1 78.03 ? C7 NAG 1299 C 1 HETATM 8 C C8 NAG . . . H 4 -10.272 23.166 42.267 1 77.18 ? C8 NAG 1299 C 1 HETATM 9 N N2 NAG . . . H 4 -11.032 21.383 43.755 1 76.83 ? N2 NAG 1299 C 1 HETATM 10 O O3 NAG . . . H 4 -9.407 22.72 45.781 1 75.64 ? O3 NAG 1299 C 1 HETATM 11 O O4 NAG . . . H 4 -9.771 21.583 48.443 1 76.16 ? O4 NAG 1299 C 1 HETATM 12 O O5 NAG . . . H 4 -13.053 21.088 46.855 1 72.68 ? O5 NAG 1299 C 1 HETATM 13 O O6 NAG . . . H 4 -13.469 21.99 49.312 1 71.77 ? O6 NAG 1299 C 1 HETATM 14 O O7 NAG . . . H 4 -12.321 21.964 42.001 1 77.42 ? O7 NAG 1299 C 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 117 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #