data_5FUV
#
_model_server_result.job_id            z1rYlGZqgz0jw_tI5mArHw 
_model_server_result.datetime_utc      '2024-11-27 00:56:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fuv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1385}' 
#
_entry.id    5FUV 
#
_exptl.entry_id    5FUV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.229 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            THYMIDINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FUV 
_cell.length_a            114.68 
_cell.length_b            114.68 
_cell.length_c            105.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FUV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 123 A CYS 325 1_555 B SG CYS 123 B CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc1 A SG CYS 139 A CYS 341 1_555 G ZN ZN . A ZN 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc2 A SG CYS 142 A CYS 344 1_555 G ZN ZN . A ZN 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc3 A SG CYS 172 A CYS 374 1_555 G ZN ZN . A ZN 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc4 A SG CYS 175 A CYS 377 1_555 G ZN ZN . A ZN 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc5 B SG CYS 139 B CYS 341 1_555 J ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc6 B SG CYS 142 B CYS 344 1_555 J ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc7 B SG CYS 172 B CYS 374 1_555 J ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc8 B SG CYS 175 B CYS 377 1_555 J ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
#
_chem_comp.formula           'C10 H14 N2 O5' 
_chem_comp.formula_weight    242.229 
_chem_comp.id                THM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              THYMIDINE 
_chem_comp.type              'dna oh 5 prime terminus' 
_chem_comp.pdbx_synonyms     "DEOXYTHYMIDINE;2'-DEOXYTHYMIDINE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' THM sing 307 n n 
O5' HO5' THM sing 308 n n 
C5' C4' THM sing 309 n n 
C5' "H5'1" THM sing 310 n n 
C5' "H5'2" THM sing 311 n n 
C4' O4' THM sing 312 n n 
C4' C3' THM sing 313 n n 
C4' H4' THM sing 314 n n 
O4' C1' THM sing 315 n n 
C3' O3' THM sing 316 n n 
C3' C2' THM sing 317 n n 
C3' H3' THM sing 318 n n 
O3' HO3' THM sing 319 n n 
C2' C1' THM sing 320 n n 
C2' "H2'1" THM sing 321 n n 
C2' "H2'2" THM sing 322 n n 
C1' N1 THM sing 323 n n 
C1' H1' THM sing 324 n n 
N1 C2 THM sing 325 n n 
N1 C6 THM sing 326 n n 
C2 O2 THM doub 327 n n 
C2 N3 THM sing 328 n n 
N3 C4 THM sing 329 n n 
N3 HN3 THM sing 330 n n 
C4 O4 THM doub 331 n n 
C4 C5 THM sing 332 n n 
C5 C5M THM sing 333 n n 
C5 C6 THM doub 334 n n 
C5M HM51 THM sing 335 n n 
C5M HM52 THM sing 336 n n 
C5M HM53 THM sing 337 n n 
C6 H6 THM sing 338 n n 
#
_atom_sites.entry_id                     5FUV 
_atom_sites.fract_transf_matrix[1][1]    0.00872 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00947 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1385 1385 GOL GOL . 
D 2 GOL A 1 1386 1386 GOL GOL . 
E 3 PO4 A 1 1387 1387 PO4 PO4 . 
F 4 THM A 1 1388 1388 THM THM . 
G 5 ZN A 1 1389 1389 ZN ZN . 
H 2 GOL B 1 1384 1384 GOL GOL . 
I 4 THM B 1 1385 1385 THM THM . 
J 5 ZN B 1 1386 1386 ZN ZN . 
K 6 HOH A 1 2001 2001 HOH HOH . 
K 6 HOH A 2 2002 2002 HOH HOH . 
K 6 HOH A 3 2003 2003 HOH HOH . 
K 6 HOH A 4 2004 2004 HOH HOH . 
K 6 HOH A 5 2005 2005 HOH HOH . 
K 6 HOH A 6 2006 2006 HOH HOH . 
K 6 HOH A 7 2007 2007 HOH HOH . 
K 6 HOH A 8 2008 2008 HOH HOH . 
K 6 HOH A 9 2009 2009 HOH HOH . 
K 6 HOH A 10 2010 2010 HOH HOH . 
K 6 HOH A 11 2011 2011 HOH HOH . 
K 6 HOH A 12 2012 2012 HOH HOH . 
K 6 HOH A 13 2013 2013 HOH HOH . 
K 6 HOH A 14 2014 2014 HOH HOH . 
K 6 HOH A 15 2015 2015 HOH HOH . 
K 6 HOH A 16 2016 2016 HOH HOH . 
K 6 HOH A 17 2017 2017 HOH HOH . 
K 6 HOH A 18 2018 2018 HOH HOH . 
K 6 HOH A 19 2019 2019 HOH HOH . 
K 6 HOH A 20 2020 2020 HOH HOH . 
K 6 HOH A 21 2021 2021 HOH HOH . 
K 6 HOH A 22 2022 2022 HOH HOH . 
K 6 HOH A 23 2023 2023 HOH HOH . 
K 6 HOH A 24 2024 2024 HOH HOH . 
K 6 HOH A 25 2025 2025 HOH HOH . 
K 6 HOH A 26 2026 2026 HOH HOH . 
K 6 HOH A 27 2027 2027 HOH HOH . 
K 6 HOH A 28 2028 2028 HOH HOH . 
K 6 HOH A 29 2029 2029 HOH HOH . 
K 6 HOH A 30 2030 2030 HOH HOH . 
K 6 HOH A 31 2031 2031 HOH HOH . 
K 6 HOH A 32 2032 2032 HOH HOH . 
K 6 HOH A 33 2033 2033 HOH HOH . 
K 6 HOH A 34 2034 2034 HOH HOH . 
K 6 HOH A 35 2035 2035 HOH HOH . 
K 6 HOH A 36 2036 2036 HOH HOH . 
K 6 HOH A 37 2037 2037 HOH HOH . 
K 6 HOH A 38 2038 2038 HOH HOH . 
K 6 HOH A 39 2039 2039 HOH HOH . 
K 6 HOH A 40 2040 2040 HOH HOH . 
K 6 HOH A 41 2041 2041 HOH HOH . 
K 6 HOH A 42 2042 2042 HOH HOH . 
K 6 HOH A 43 2043 2043 HOH HOH . 
K 6 HOH A 44 2044 2044 HOH HOH . 
K 6 HOH A 45 2045 2045 HOH HOH . 
K 6 HOH A 46 2046 2046 HOH HOH . 
K 6 HOH A 47 2047 2047 HOH HOH . 
K 6 HOH A 48 2048 2048 HOH HOH . 
K 6 HOH A 49 2049 2049 HOH HOH . 
K 6 HOH A 50 2050 2050 HOH HOH . 
K 6 HOH A 51 2051 2051 HOH HOH . 
K 6 HOH A 52 2052 2052 HOH HOH . 
K 6 HOH A 53 2053 2053 HOH HOH . 
K 6 HOH A 54 2054 2054 HOH HOH . 
K 6 HOH A 55 2055 2055 HOH HOH . 
K 6 HOH A 56 2056 2056 HOH HOH . 
K 6 HOH A 57 2057 2057 HOH HOH . 
K 6 HOH A 58 2058 2058 HOH HOH . 
K 6 HOH A 59 2059 2059 HOH HOH . 
K 6 HOH A 60 2060 2060 HOH HOH . 
K 6 HOH A 61 2061 2061 HOH HOH . 
K 6 HOH A 62 2062 2062 HOH HOH . 
L 6 HOH B 1 2001 2001 HOH HOH . 
L 6 HOH B 2 2002 2002 HOH HOH . 
L 6 HOH B 3 2003 2003 HOH HOH . 
L 6 HOH B 4 2004 2004 HOH HOH . 
L 6 HOH B 5 2005 2005 HOH HOH . 
L 6 HOH B 6 2006 2006 HOH HOH . 
L 6 HOH B 7 2007 2007 HOH HOH . 
L 6 HOH B 8 2008 2008 HOH HOH . 
L 6 HOH B 9 2009 2009 HOH HOH . 
L 6 HOH B 10 2010 2010 HOH HOH . 
L 6 HOH B 11 2011 2011 HOH HOH . 
L 6 HOH B 12 2012 2012 HOH HOH . 
L 6 HOH B 13 2013 2013 HOH HOH . 
L 6 HOH B 14 2014 2014 HOH HOH . 
L 6 HOH B 15 2015 2015 HOH HOH . 
L 6 HOH B 16 2016 2016 HOH HOH . 
L 6 HOH B 17 2017 2017 HOH HOH . 
L 6 HOH B 18 2018 2018 HOH HOH . 
L 6 HOH B 19 2019 2019 HOH HOH . 
L 6 HOH B 20 2020 2020 HOH HOH . 
L 6 HOH B 21 2021 2021 HOH HOH . 
L 6 HOH B 22 2022 2022 HOH HOH . 
L 6 HOH B 23 2023 2023 HOH HOH . 
L 6 HOH B 24 2024 2024 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' THM . . . I 4 -3.819 -51.463 -15.169 1 62.59 ? O5' THM 1385 B 1 
HETATM 2 C C5' THM . . . I 4 -3.324 -51.06 -16.412 1 60.81 ? C5' THM 1385 B 1 
HETATM 3 C C4' THM . . . I 4 -4.155 -51.886 -17.415 1 61.62 ? C4' THM 1385 B 1 
HETATM 4 O O4' THM . . . I 4 -4.739 -51.044 -18.429 1 53.89 ? O4' THM 1385 B 1 
HETATM 5 C C3' THM . . . I 4 -3.227 -52.911 -18.06 1 57.25 ? C3' THM 1385 B 1 
HETATM 6 O O3' THM . . . I 4 -4.009 -54.084 -18.185 1 58.93 ? O3' THM 1385 B 1 
HETATM 7 C C2' THM . . . I 4 -2.788 -52.204 -19.317 1 52.51 ? C2' THM 1385 B 1 
HETATM 8 C C1' THM . . . I 4 -4.053 -51.369 -19.579 1 53.67 ? C1' THM 1385 B 1 
HETATM 9 N N1 THM . . . I 4 -3.862 -50.222 -20.386 1 67.14 ? N1 THM 1385 B 1 
HETATM 10 C C2 THM . . . I 4 -4.69 -50.096 -21.526 1 69.54 ? C2 THM 1385 B 1 
HETATM 11 O O2 THM . . . I 4 -5.622 -50.912 -21.721 1 65.1 ? O2 THM 1385 B 1 
HETATM 12 N N3 THM . . . I 4 -4.516 -49.047 -22.351 1 67.1 ? N3 THM 1385 B 1 
HETATM 13 C C4 THM . . . I 4 -3.612 -48.08 -22.139 1 55.35 ? C4 THM 1385 B 1 
HETATM 14 O O4 THM . . . I 4 -3.482 -47.127 -22.928 1 52.78 ? O4 THM 1385 B 1 
HETATM 15 C C5 THM . . . I 4 -2.739 -48.21 -20.97 1 54.13 ? C5 THM 1385 B 1 
HETATM 16 C C5M THM . . . I 4 -1.679 -47.176 -20.696 1 54.33 ? C5M THM 1385 B 1 
HETATM 17 C C6 THM . . . I 4 -2.918 -49.307 -20.123 1 64.14 ? C6 THM 1385 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#