data_5FUY # _model_server_result.job_id kdVMOqHeRhFbGIReBzf6ig _model_server_result.datetime_utc '2024-11-24 06:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fuy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1385}' # _entry.id 5FUY # _exptl.entry_id 5FUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FUY _cell.length_a 87.614 _cell.length_b 96.999 _cell.length_c 304.431 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,G,H,I,J,K,L,M,N,O,P,Q,R,Y,Z,AA,BA 1 1 E,F,S,T,U,V,W,X,CA,DA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 152.2155 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 M N N ? 2 P N N ? 2 S N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 123 B CYS 325 1_555 C SG CYS 123 C CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc1 A SG CYS 139 A CYS 341 1_555 I ZN ZN . A ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 A SG CYS 142 A CYS 344 1_555 I ZN ZN . A ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A SG CYS 172 A CYS 374 1_555 I ZN ZN . A ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 A SG CYS 175 A CYS 377 1_555 I ZN ZN . A ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 B SG CYS 139 B CYS 341 1_555 L ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 B SG CYS 142 B CYS 344 1_555 L ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 B SG CYS 172 B CYS 374 1_555 L ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 B SG CYS 175 B CYS 377 1_555 L ZN ZN . B ZN 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc9 C SG CYS 139 C CYS 341 1_555 O ZN ZN . C ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 C SG CYS 142 C CYS 344 1_555 O ZN ZN . C ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc11 C SG CYS 172 C CYS 374 1_555 O ZN ZN . C ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc12 C SG CYS 175 C CYS 377 1_555 O ZN ZN . C ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc13 D SG CYS 139 D CYS 341 1_555 R ZN ZN . D ZN 1385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc14 D SG CYS 142 D CYS 344 1_555 R ZN ZN . D ZN 1385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 D SG CYS 172 D CYS 374 1_555 R ZN ZN . D ZN 1385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc16 D SG CYS 175 D CYS 377 1_555 R ZN ZN . D ZN 1385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc17 E SG CYS 139 E CYS 341 1_555 U ZN ZN . E ZN 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc18 E SG CYS 142 E CYS 344 1_555 U ZN ZN . E ZN 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc19 E SG CYS 172 E CYS 374 1_555 U ZN ZN . E ZN 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc20 E SG CYS 175 E CYS 377 1_555 U ZN ZN . E ZN 1388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc21 F SG CYS 139 F CYS 341 1_555 X ZN ZN . F ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc22 F SG CYS 142 F CYS 344 1_555 X ZN ZN . F ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc23 F SG CYS 172 F CYS 374 1_555 X ZN ZN . F ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc24 F SG CYS 175 F CYS 377 1_555 X ZN ZN . F ZN 1387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 5FUY _atom_sites.fract_transf_matrix[1][1] 0.011414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 1385 1385 PO4 PO4 . H 3 QBT A 1 1386 1386 QBT QBT . I 4 ZN A 1 1387 1387 ZN ZN . J 2 PO4 B 1 1384 1384 PO4 PO4 . K 3 QBT B 1 1385 1385 QBT QBT . L 4 ZN B 1 1386 1386 ZN ZN . M 2 PO4 C 1 1385 1385 PO4 PO4 . N 3 QBT C 1 1386 1386 QBT QBT . O 4 ZN C 1 1387 1387 ZN ZN . P 2 PO4 D 1 1383 1383 PO4 PO4 . Q 3 QBT D 1 1384 1384 QBT QBT . R 4 ZN D 1 1385 1385 ZN ZN . S 2 PO4 E 1 1386 1386 PO4 PO4 . T 3 QBT E 1 1387 1387 QBT QBT . U 4 ZN E 1 1388 1388 ZN ZN . V 2 PO4 F 1 1385 1385 PO4 PO4 . W 3 QBT F 1 1386 1386 QBT QBT . X 4 ZN F 1 1387 1387 ZN ZN . Y 5 HOH A 1 2001 2001 HOH HOH . Y 5 HOH A 2 2002 2002 HOH HOH . Y 5 HOH A 3 2003 2003 HOH HOH . Y 5 HOH A 4 2004 2004 HOH HOH . Y 5 HOH A 5 2005 2005 HOH HOH . Y 5 HOH A 6 2006 2006 HOH HOH . Y 5 HOH A 7 2007 2007 HOH HOH . Y 5 HOH A 8 2008 2008 HOH HOH . Z 5 HOH B 1 2001 2001 HOH HOH . Z 5 HOH B 2 2002 2002 HOH HOH . Z 5 HOH B 3 2003 2003 HOH HOH . Z 5 HOH B 4 2004 2004 HOH HOH . Z 5 HOH B 5 2005 2005 HOH HOH . Z 5 HOH B 6 2006 2006 HOH HOH . Z 5 HOH B 7 2007 2007 HOH HOH . AA 5 HOH C 1 2001 2001 HOH HOH . BA 5 HOH D 1 2001 2001 HOH HOH . BA 5 HOH D 2 2002 2002 HOH HOH . BA 5 HOH D 3 2003 2003 HOH HOH . CA 5 HOH E 1 2001 2001 HOH HOH . CA 5 HOH E 2 2002 2002 HOH HOH . CA 5 HOH E 3 2003 2003 HOH HOH . CA 5 HOH E 4 2004 2004 HOH HOH . CA 5 HOH E 5 2005 2005 HOH HOH . CA 5 HOH E 6 2006 2006 HOH HOH . CA 5 HOH E 7 2007 2007 HOH HOH . CA 5 HOH E 8 2008 2008 HOH HOH . CA 5 HOH E 9 2009 2009 HOH HOH . CA 5 HOH E 10 2010 2010 HOH HOH . CA 5 HOH E 11 2011 2011 HOH HOH . DA 5 HOH F 1 2001 2001 HOH HOH . DA 5 HOH F 2 2002 2002 HOH HOH . DA 5 HOH F 3 2003 2003 HOH HOH . DA 5 HOH F 4 2004 2004 HOH HOH . DA 5 HOH F 5 2005 2005 HOH HOH . DA 5 HOH F 6 2006 2006 HOH HOH . DA 5 HOH F 7 2007 2007 HOH HOH . DA 5 HOH F 8 2008 2008 HOH HOH . DA 5 HOH F 9 2009 2009 HOH HOH . DA 5 HOH F 10 2010 2010 HOH HOH . DA 5 HOH F 11 2011 2011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . V 2 -9.63 -5.424 72.533 1 39.8 ? P PO4 1385 F 1 HETATM 2 O O1 PO4 . . . V 2 -9.564 -6.93 72.462 1 36.48 ? O1 PO4 1385 F 1 HETATM 3 O O2 PO4 . . . V 2 -8.473 -4.85 71.733 1 40.15 ? O2 PO4 1385 F 1 HETATM 4 O O3 PO4 . . . V 2 -9.628 -4.834 73.931 1 39.51 ? O3 PO4 1385 F 1 HETATM 5 O O4 PO4 . . . V 2 -10.944 -4.979 71.957 1 44.45 ? O4 PO4 1385 F 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #