data_5FV0 # _model_server_result.job_id uqD3U79wvzfyaHgbneQZYQ _model_server_result.datetime_utc '2024-12-01 11:53:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2480}' # _entry.id 5FV0 # _exptl.entry_id 5FV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 640.328 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-[2-(METHYLAMINO)BENZOYL]ADENOSINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FV0 _cell.length_a 85.917 _cell.length_b 152.372 _cell.length_c 207.205 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H23 N6 O14 P3' _chem_comp.formula_weight 640.328 _chem_comp.id ONA _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-[2-(METHYLAMINO)BENZOYL]ADENOSINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'(3')-O-(N-METHYLANTHRANILOYL)-ADENOSINE 5'-TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA7 NA1 ONA sing 323 n n CA7 HA71 ONA sing 324 n n CA7 HA72 ONA sing 325 n n CA7 HA73 ONA sing 326 n n NA1 CA6 ONA sing 327 n n NA1 HA1 ONA sing 328 n n CA6 CA5 ONA sing 329 n y CA6 CA1 ONA doub 330 n y CA5 CA4 ONA doub 331 n y CA5 HA5 ONA sing 332 n n CA4 CA3 ONA sing 333 n y CA4 HA4 ONA sing 334 n n CA3 CA2 ONA doub 335 n y CA3 HA3 ONA sing 336 n n CA2 CA1 ONA sing 337 n y CA2 HA2 ONA sing 338 n n CA1 CA ONA sing 339 n n CA OA ONA doub 340 n n CA O3' ONA sing 341 n n O3' C3' ONA sing 342 n n C3' C2' ONA sing 343 n n C3' C4' ONA sing 344 n n C3' H3' ONA sing 345 n n C2' O2' ONA sing 346 n n C2' C1' ONA sing 347 n n C2' H1 ONA sing 348 n n O2' H2' ONA sing 349 n n C4' C5' ONA sing 350 n n C4' O4' ONA sing 351 n n C4' H4' ONA sing 352 n n C5' O5' ONA sing 353 n n C5' "H5'1" ONA sing 354 n n C5' "H5'2" ONA sing 355 n n O5' PA ONA sing 356 n n PA O3A ONA doub 357 n n PA O2A ONA sing 358 n n PA O1A ONA sing 359 n n O2A H2A ONA sing 360 n n O1A PB ONA sing 361 n n PB O3B ONA doub 362 n n PB O2B ONA sing 363 n n PB O1B ONA sing 364 n n O2B H2B ONA sing 365 n n O1B PG ONA sing 366 n n PG O3G ONA doub 367 n n PG O1G ONA sing 368 n n PG O2G ONA sing 369 n n O1G H1G ONA sing 370 n n O2G H2G ONA sing 371 n n O4' C1' ONA sing 372 n n C1' N9 ONA sing 373 n n C1' H1' ONA sing 374 n n N9 C8 ONA sing 375 n y N9 C4 ONA sing 376 n y C8 N7 ONA doub 377 n y C8 H8 ONA sing 378 n n N7 C5 ONA sing 379 n y C5 C4 ONA sing 380 n y C5 C6 ONA doub 381 n y C4 N3 ONA doub 382 n y N3 C2 ONA sing 383 n y C2 N1 ONA doub 384 n y C2 H2 ONA sing 385 n n N1 C6 ONA sing 386 n y C6 N6 ONA sing 387 n n N6 HN61 ONA sing 388 n n N6 HN62 ONA sing 389 n n # _atom_sites.entry_id 5FV0 _atom_sites.fract_transf_matrix[1][1] 0.011639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ONA A 1 2480 2480 ONA ONA . D 3 1PE A 1 2481 2481 1PE 1PE . E 4 ATP B 1 2480 2480 ATP ATP . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . G 5 HOH B 9 2009 2009 HOH HOH . G 5 HOH B 10 2010 2010 HOH HOH . G 5 HOH B 11 2011 2011 HOH HOH . G 5 HOH B 12 2012 2012 HOH HOH . G 5 HOH B 13 2013 2013 HOH HOH . G 5 HOH B 14 2014 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA7 ONA . . . C 2 39.559 50.541 45.255 1 62.66 ? CA7 ONA 2480 A 1 HETATM 2 N NA1 ONA . . . C 2 38.758 51.42 44.413 1 62.7 ? NA1 ONA 2480 A 1 HETATM 3 C CA6 ONA . . . C 2 37.873 50.999 43.464 1 62.7 ? CA6 ONA 2480 A 1 HETATM 4 C CA5 ONA . . . C 2 37.642 49.644 43.191 1 62.79 ? CA5 ONA 2480 A 1 HETATM 5 C CA4 ONA . . . C 2 36.725 49.26 42.212 1 62.74 ? CA4 ONA 2480 A 1 HETATM 6 C CA3 ONA . . . C 2 36.014 50.207 41.48 1 62.85 ? CA3 ONA 2480 A 1 HETATM 7 C CA2 ONA . . . C 2 36.199 51.569 41.707 1 62.82 ? CA2 ONA 2480 A 1 HETATM 8 C CA1 ONA . . . C 2 37.104 52.01 42.67 1 62.62 ? CA1 ONA 2480 A 1 HETATM 9 C CA ONA . . . C 2 37.283 53.491 42.892 1 62.08 ? CA ONA 2480 A 1 HETATM 10 O OA ONA . . . C 2 37.62 53.91 43.988 1 62.7 ? OA ONA 2480 A 1 HETATM 11 O O3' ONA . . . C 2 37.049 54.458 41.821 1 60.73 ? O3' ONA 2480 A 1 HETATM 12 C C3' ONA . . . C 2 38.129 54.794 40.931 1 59.8 ? C3' ONA 2480 A 1 HETATM 13 C C2' ONA . . . C 2 37.778 54.327 39.528 1 59.84 ? C2' ONA 2480 A 1 HETATM 14 O O2' ONA . . . C 2 36.372 54.113 39.37 1 59.98 ? O2' ONA 2480 A 1 HETATM 15 C C4' ONA . . . C 2 39.475 54.123 41.228 1 59.38 ? C4' ONA 2480 A 1 HETATM 16 C C5' ONA . . . C 2 40.597 55.128 41.468 1 58.48 ? C5' ONA 2480 A 1 HETATM 17 O O5' ONA . . . C 2 41.859 54.461 41.54 1 57.44 ? O5' ONA 2480 A 1 HETATM 18 P PA ONA . . . C 2 42.129 53.276 42.598 1 56.64 ? PA ONA 2480 A 1 HETATM 19 O O3A ONA . . . C 2 41.694 51.974 41.972 1 56.18 ? O3A ONA 2480 A 1 HETATM 20 O O2A ONA . . . C 2 41.548 53.683 43.932 1 56.75 ? O2A ONA 2480 A 1 HETATM 21 O O1A ONA . . . C 2 43.736 53.244 42.715 1 56.4 ? O1A ONA 2480 A 1 HETATM 22 P PB ONA . . . C 2 44.604 54.546 43.095 1 55.66 ? PB ONA 2480 A 1 HETATM 23 O O3B ONA . . . C 2 45.228 55.069 41.824 1 55.9 ? O3B ONA 2480 A 1 HETATM 24 O O2B ONA . . . C 2 43.787 55.474 43.962 1 55.94 ? O2B ONA 2480 A 1 HETATM 25 O O1B ONA . . . C 2 45.779 53.917 43.998 1 56.92 ? O1B ONA 2480 A 1 HETATM 26 P PG ONA . . . C 2 45.535 53.424 45.513 1 58.02 ? PG ONA 2480 A 1 HETATM 27 O O3G ONA . . . C 2 46.651 52.431 45.731 1 57.55 ? O3G ONA 2480 A 1 HETATM 28 O O1G ONA . . . C 2 44.155 52.807 45.521 1 57.27 ? O1G ONA 2480 A 1 HETATM 29 O O2G ONA . . . C 2 45.656 54.688 46.331 1 57.86 ? O2G ONA 2480 A 1 HETATM 30 O O4' ONA . . . C 2 39.783 53.296 40.1 1 60 ? O4' ONA 2480 A 1 HETATM 31 C C1' ONA . . . C 2 38.568 53.035 39.394 1 59.86 ? C1' ONA 2480 A 1 HETATM 32 N N9 ONA . . . C 2 38.802 52.578 37.996 1 59.66 ? N9 ONA 2480 A 1 HETATM 33 C C8 ONA . . . C 2 39.895 51.913 37.575 1 59.4 ? C8 ONA 2480 A 1 HETATM 34 N N7 ONA . . . C 2 39.804 51.609 36.256 1 59.73 ? N7 ONA 2480 A 1 HETATM 35 C C5 ONA . . . C 2 38.625 52.075 35.814 1 60.15 ? C5 ONA 2480 A 1 HETATM 36 C C4 ONA . . . C 2 37.962 52.706 36.965 1 60.01 ? C4 ONA 2480 A 1 HETATM 37 N N3 ONA . . . C 2 36.737 53.263 36.782 1 60.5 ? N3 ONA 2480 A 1 HETATM 38 C C2 ONA . . . C 2 36.13 53.246 35.578 1 60.99 ? C2 ONA 2480 A 1 HETATM 39 N N1 ONA . . . C 2 36.685 52.683 34.484 1 61.17 ? N1 ONA 2480 A 1 HETATM 40 C C6 ONA . . . C 2 37.901 52.09 34.52 1 60.81 ? C6 ONA 2480 A 1 HETATM 41 N N6 ONA . . . C 2 38.443 51.53 33.414 1 61.12 ? N6 ONA 2480 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 41 #