data_5FV0 # _model_server_result.job_id h9OlE567OBYBcRPtIOM-RQ _model_server_result.datetime_utc '2024-10-27 06:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2480}' # _entry.id 5FV0 # _exptl.entry_id 5FV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FV0 _cell.length_a 85.917 _cell.length_b 152.372 _cell.length_c 207.205 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 107 n n PG O2G ATP sing 108 n n PG O3G ATP sing 109 n n PG O3B ATP sing 110 n n O2G HOG2 ATP sing 111 n n O3G HOG3 ATP sing 112 n n PB O1B ATP doub 113 n n PB O2B ATP sing 114 n n PB O3B ATP sing 115 n n PB O3A ATP sing 116 n n O2B HOB2 ATP sing 117 n n PA O1A ATP doub 118 n n PA O2A ATP sing 119 n n PA O3A ATP sing 120 n n PA O5' ATP sing 121 n n O2A HOA2 ATP sing 122 n n O5' C5' ATP sing 123 n n C5' C4' ATP sing 124 n n C5' "H5'1" ATP sing 125 n n C5' "H5'2" ATP sing 126 n n C4' O4' ATP sing 127 n n C4' C3' ATP sing 128 n n C4' H4' ATP sing 129 n n O4' C1' ATP sing 130 n n C3' O3' ATP sing 131 n n C3' C2' ATP sing 132 n n C3' H3' ATP sing 133 n n O3' HO3' ATP sing 134 n n C2' O2' ATP sing 135 n n C2' C1' ATP sing 136 n n C2' H2' ATP sing 137 n n O2' HO2' ATP sing 138 n n C1' N9 ATP sing 139 n n C1' H1' ATP sing 140 n n N9 C8 ATP sing 141 n y N9 C4 ATP sing 142 n y C8 N7 ATP doub 143 n y C8 H8 ATP sing 144 n n N7 C5 ATP sing 145 n y C5 C6 ATP sing 146 n y C5 C4 ATP doub 147 n y C6 N6 ATP sing 148 n n C6 N1 ATP doub 149 n y N6 HN61 ATP sing 150 n n N6 HN62 ATP sing 151 n n N1 C2 ATP sing 152 n y C2 N3 ATP doub 153 n y C2 H2 ATP sing 154 n n N3 C4 ATP sing 155 n y # _atom_sites.entry_id 5FV0 _atom_sites.fract_transf_matrix[1][1] 0.011639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ONA A 1 2480 2480 ONA ONA . D 3 1PE A 1 2481 2481 1PE 1PE . E 4 ATP B 1 2480 2480 ATP ATP . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2002 HOH HOH . G 5 HOH B 3 2003 2003 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . G 5 HOH B 5 2005 2005 HOH HOH . G 5 HOH B 6 2006 2006 HOH HOH . G 5 HOH B 7 2007 2007 HOH HOH . G 5 HOH B 8 2008 2008 HOH HOH . G 5 HOH B 9 2009 2009 HOH HOH . G 5 HOH B 10 2010 2010 HOH HOH . G 5 HOH B 11 2011 2011 HOH HOH . G 5 HOH B 12 2012 2012 HOH HOH . G 5 HOH B 13 2013 2013 HOH HOH . G 5 HOH B 14 2014 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 53.191 27.148 108.252 1 53.24 ? PG ATP 2480 B 1 HETATM 2 O O1G ATP . . . E 4 53.33 25.684 107.899 1 52.78 ? O1G ATP 2480 B 1 HETATM 3 O O2G ATP . . . E 4 51.974 27.824 107.663 1 52.56 ? O2G ATP 2480 B 1 HETATM 4 O O3G ATP . . . E 4 54.469 27.935 108.085 1 52.89 ? O3G ATP 2480 B 1 HETATM 5 P PB ATP . . . E 4 52.408 25.919 110.689 1 50.05 ? PB ATP 2480 B 1 HETATM 6 O O1B ATP . . . E 4 53.62 25.233 111.273 1 49.99 ? O1B ATP 2480 B 1 HETATM 7 O O2B ATP . . . E 4 51.429 25.119 109.862 1 50.02 ? O2B ATP 2480 B 1 HETATM 8 O O3B ATP . . . E 4 52.919 27.195 109.844 1 51.35 ? O3B ATP 2480 B 1 HETATM 9 P PA ATP . . . E 4 50.494 27.747 111.656 1 48.25 ? PA ATP 2480 B 1 HETATM 10 O O1A ATP . . . E 4 51.069 29.042 112.176 1 48.07 ? O1A ATP 2480 B 1 HETATM 11 O O2A ATP . . . E 4 50.003 27.675 110.229 1 48.28 ? O2A ATP 2480 B 1 HETATM 12 O O3A ATP . . . E 4 51.587 26.588 111.904 1 49.09 ? O3A ATP 2480 B 1 HETATM 13 O O5' ATP . . . E 4 49.289 27.313 112.635 1 47.52 ? O5' ATP 2480 B 1 HETATM 14 C C5' ATP . . . E 4 48.276 26.399 112.217 1 46.9 ? C5' ATP 2480 B 1 HETATM 15 C C4' ATP . . . E 4 47.16 26.329 113.256 1 46.58 ? C4' ATP 2480 B 1 HETATM 16 O O4' ATP . . . E 4 47.694 26.151 114.573 1 46.22 ? O4' ATP 2480 B 1 HETATM 17 C C3' ATP . . . E 4 46.314 27.595 113.283 1 46.37 ? C3' ATP 2480 B 1 HETATM 18 O O3' ATP . . . E 4 45.074 27.392 112.596 1 46.76 ? O3' ATP 2480 B 1 HETATM 19 C C2' ATP . . . E 4 46.099 27.917 114.752 1 46.12 ? C2' ATP 2480 B 1 HETATM 20 O O2' ATP . . . E 4 44.73 27.748 115.139 1 46.15 ? O2' ATP 2480 B 1 HETATM 21 C C1' ATP . . . E 4 46.987 26.953 115.528 1 45.9 ? C1' ATP 2480 B 1 HETATM 22 N N9 ATP . . . E 4 47.929 27.721 116.382 1 45.33 ? N9 ATP 2480 B 1 HETATM 23 C C8 ATP . . . E 4 49.166 28.116 116.029 1 45.05 ? C8 ATP 2480 B 1 HETATM 24 N N7 ATP . . . E 4 49.763 28.803 117.035 1 44.86 ? N7 ATP 2480 B 1 HETATM 25 C C5 ATP . . . E 4 48.895 28.857 118.059 1 44.75 ? C5 ATP 2480 B 1 HETATM 26 C C6 ATP . . . E 4 48.889 29.433 119.425 1 44.63 ? C6 ATP 2480 B 1 HETATM 27 N N6 ATP . . . E 4 49.966 30.103 119.897 1 44.64 ? N6 ATP 2480 B 1 HETATM 28 N N1 ATP . . . E 4 47.775 29.263 120.177 1 44.59 ? N1 ATP 2480 B 1 HETATM 29 C C2 ATP . . . E 4 46.694 28.597 119.718 1 44.64 ? C2 ATP 2480 B 1 HETATM 30 N N3 ATP . . . E 4 46.638 28.051 118.485 1 44.69 ? N3 ATP 2480 B 1 HETATM 31 C C4 ATP . . . E 4 47.684 28.144 117.625 1 44.92 ? C4 ATP 2480 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #