data_5FV8
#
_model_server_result.job_id            mT-CjnFWfdQ4VdZHot9WeA 
_model_server_result.datetime_utc      '2025-01-22 04:37:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1039}' 
#
_entry.id    5FV8 
#
_exptl.entry_id    5FV8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              597.822 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FV8 
_cell.length_a            63.82 
_cell.length_b            63.82 
_cell.length_c            190.63 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,F,G,H,K 1 1 
B,C,E,I,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
_chem_comp.formula           'C30 H63 N O10' 
_chem_comp.formula_weight    597.822 
_chem_comp.id                JEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     JEFFAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C38 O12 JEF sing 152 n n 
C38 H381 JEF sing 153 n n 
C38 H382 JEF sing 154 n n 
C38 H383 JEF sing 155 n n 
O12 C37 JEF sing 156 n n 
C37 C36 JEF sing 157 n n 
C37 H371 JEF sing 158 n n 
C37 H372 JEF sing 159 n n 
C36 O11 JEF sing 160 n n 
C36 H361 JEF sing 161 n n 
C36 H362 JEF sing 162 n n 
C33 C34 JEF sing 163 n n 
C33 C32 JEF sing 164 n n 
C33 H33 JEF sing 165 n n 
C34 H341 JEF sing 166 n n 
C34 H342 JEF sing 167 n n 
C34 H343 JEF sing 168 n n 
C32 O10 JEF sing 169 n n 
C32 H321 JEF sing 170 n n 
C32 H322 JEF sing 171 n n 
O10 C19 JEF sing 172 n n 
C19 C40 JEF sing 173 n n 
C19 C20 JEF sing 174 n n 
C19 H19 JEF sing 175 n n 
C40 H401 JEF sing 176 n n 
C40 H402 JEF sing 177 n n 
C40 H403 JEF sing 178 n n 
C20 O JEF sing 179 n n 
C20 H201 JEF sing 180 n n 
C20 H202 JEF sing 181 n n 
O C JEF sing 182 n n 
C C18 JEF sing 183 n n 
C C17 JEF sing 184 n n 
C H JEF sing 185 n n 
C18 H181 JEF sing 186 n n 
C18 H182 JEF sing 187 n n 
C18 H183 JEF sing 188 n n 
C17 OH JEF sing 189 n n 
C17 H171 JEF sing 190 n n 
C17 H172 JEF sing 191 n n 
OH C2 JEF sing 192 n n 
C2 C1 JEF sing 193 n n 
C2 C3 JEF sing 194 n n 
C2 H2 JEF sing 195 n n 
C1 H11A JEF sing 196 n n 
C1 H12 JEF sing 197 n n 
C1 H13A JEF sing 198 n n 
C3 O2 JEF sing 199 n n 
C3 H31 JEF sing 200 n n 
C3 H32 JEF sing 201 n n 
O2 C5 JEF sing 202 n n 
C5 C6 JEF sing 203 n n 
C5 C4 JEF sing 204 n n 
C5 H5 JEF sing 205 n n 
C6 H61 JEF sing 206 n n 
C6 H62 JEF sing 207 n n 
C6 H63 JEF sing 208 n n 
C4 O3 JEF sing 209 n n 
C4 H41 JEF sing 210 n n 
C4 H42 JEF sing 211 n n 
O3 C7 JEF sing 212 n n 
C7 C9 JEF sing 213 n n 
C7 C8 JEF sing 214 n n 
C7 H7 JEF sing 215 n n 
C9 H91 JEF sing 216 n n 
C9 H92 JEF sing 217 n n 
C9 H93 JEF sing 218 n n 
C8 O4 JEF sing 219 n n 
C8 H81 JEF sing 220 n n 
C8 H82 JEF sing 221 n n 
O4 C11 JEF sing 222 n n 
C11 C12 JEF sing 223 n n 
C11 C10 JEF sing 224 n n 
C11 H11 JEF sing 225 n n 
C12 H121 JEF sing 226 n n 
C12 H122 JEF sing 227 n n 
C12 H123 JEF sing 228 n n 
C10 O5 JEF sing 229 n n 
C10 H101 JEF sing 230 n n 
C10 H102 JEF sing 231 n n 
O5 C13 JEF sing 232 n n 
C13 C15 JEF sing 233 n n 
C13 C14 JEF sing 234 n n 
C13 H13 JEF sing 235 n n 
C15 H151 JEF sing 236 n n 
C15 H152 JEF sing 237 n n 
C15 H153 JEF sing 238 n n 
C14 O6 JEF sing 239 n n 
C14 H141 JEF sing 240 n n 
C14 H142 JEF sing 241 n n 
O6 C16 JEF sing 242 n n 
C16 C30 JEF sing 243 n n 
C16 H161 JEF sing 244 n n 
C16 H162 JEF sing 245 n n 
C30 C31 JEF sing 246 n n 
C30 N1 JEF sing 247 n n 
C30 H30 JEF sing 248 n n 
C31 H311 JEF sing 249 n n 
C31 H312 JEF sing 250 n n 
C31 H313 JEF sing 251 n n 
N1 HN11 JEF sing 252 n n 
N1 HN12 JEF sing 253 n n 
C33 O11 JEF sing 254 n n 
#
_atom_sites.entry_id                     5FV8 
_atom_sites.fract_transf_matrix[1][1]    0.015669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005246 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL B 1 1036 1036 GOL GOL . 
F 4 JEF E 1 1038 1038 JEF JEF . 
G 4 JEF E 1 1039 1039 JEF JEF . 
H 5 HOH A 1 2001 2001 HOH HOH . 
H 5 HOH A 2 2002 2002 HOH HOH . 
H 5 HOH A 3 2003 2003 HOH HOH . 
H 5 HOH A 4 2004 2004 HOH HOH . 
H 5 HOH A 5 2005 2005 HOH HOH . 
H 5 HOH A 6 2006 2006 HOH HOH . 
H 5 HOH A 7 2007 2007 HOH HOH . 
H 5 HOH A 8 2008 2008 HOH HOH . 
H 5 HOH A 9 2009 2009 HOH HOH . 
H 5 HOH A 10 2010 2010 HOH HOH . 
H 5 HOH A 11 2011 2011 HOH HOH . 
H 5 HOH A 12 2012 2012 HOH HOH . 
H 5 HOH A 13 2013 2013 HOH HOH . 
H 5 HOH A 14 2014 2014 HOH HOH . 
H 5 HOH A 15 2015 2015 HOH HOH . 
H 5 HOH A 16 2016 2016 HOH HOH . 
H 5 HOH A 17 2017 2017 HOH HOH . 
H 5 HOH A 18 2018 2018 HOH HOH . 
H 5 HOH A 19 2019 2019 HOH HOH . 
H 5 HOH A 20 2020 2020 HOH HOH . 
H 5 HOH A 21 2021 2021 HOH HOH . 
H 5 HOH A 22 2022 2022 HOH HOH . 
H 5 HOH A 23 2023 2023 HOH HOH . 
H 5 HOH A 24 2024 2024 HOH HOH . 
H 5 HOH A 25 2025 2025 HOH HOH . 
H 5 HOH A 26 2026 2026 HOH HOH . 
H 5 HOH A 27 2027 2027 HOH HOH . 
H 5 HOH A 28 2028 2028 HOH HOH . 
H 5 HOH A 29 2029 2029 HOH HOH . 
H 5 HOH A 30 2030 2030 HOH HOH . 
H 5 HOH A 31 2031 2031 HOH HOH . 
H 5 HOH A 32 2032 2032 HOH HOH . 
H 5 HOH A 33 2033 2033 HOH HOH . 
H 5 HOH A 34 2034 2034 HOH HOH . 
H 5 HOH A 35 2035 2035 HOH HOH . 
H 5 HOH A 36 2036 2036 HOH HOH . 
H 5 HOH A 37 2037 2037 HOH HOH . 
H 5 HOH A 38 2038 2038 HOH HOH . 
H 5 HOH A 39 2039 2039 HOH HOH . 
H 5 HOH A 40 2040 2040 HOH HOH . 
H 5 HOH A 41 2041 2041 HOH HOH . 
H 5 HOH A 42 2042 2042 HOH HOH . 
H 5 HOH A 43 2043 2043 HOH HOH . 
H 5 HOH A 44 2044 2044 HOH HOH . 
H 5 HOH A 45 2045 2045 HOH HOH . 
H 5 HOH A 46 2046 2046 HOH HOH . 
H 5 HOH A 47 2047 2047 HOH HOH . 
H 5 HOH A 48 2048 2048 HOH HOH . 
H 5 HOH A 49 2049 2049 HOH HOH . 
H 5 HOH A 50 2050 2050 HOH HOH . 
H 5 HOH A 51 2051 2051 HOH HOH . 
H 5 HOH A 52 2052 2052 HOH HOH . 
I 5 HOH B 1 2001 2001 HOH HOH . 
I 5 HOH B 2 2002 2002 HOH HOH . 
I 5 HOH B 3 2003 2003 HOH HOH . 
I 5 HOH B 4 2004 2004 HOH HOH . 
I 5 HOH B 5 2005 2005 HOH HOH . 
I 5 HOH B 6 2006 2006 HOH HOH . 
I 5 HOH B 7 2007 2007 HOH HOH . 
I 5 HOH B 8 2008 2008 HOH HOH . 
I 5 HOH B 9 2009 2009 HOH HOH . 
I 5 HOH B 10 2010 2010 HOH HOH . 
I 5 HOH B 11 2011 2011 HOH HOH . 
I 5 HOH B 12 2012 2012 HOH HOH . 
I 5 HOH B 13 2013 2013 HOH HOH . 
I 5 HOH B 14 2014 2014 HOH HOH . 
I 5 HOH B 15 2015 2015 HOH HOH . 
I 5 HOH B 16 2016 2016 HOH HOH . 
I 5 HOH B 17 2017 2017 HOH HOH . 
I 5 HOH B 18 2018 2018 HOH HOH . 
I 5 HOH B 19 2019 2019 HOH HOH . 
I 5 HOH B 20 2020 2020 HOH HOH . 
I 5 HOH B 21 2021 2021 HOH HOH . 
I 5 HOH B 22 2022 2022 HOH HOH . 
J 5 HOH D 1 2001 2001 HOH HOH . 
J 5 HOH D 2 2002 2002 HOH HOH . 
J 5 HOH D 3 2003 2003 HOH HOH . 
J 5 HOH D 4 2004 2004 HOH HOH . 
J 5 HOH D 5 2005 2005 HOH HOH . 
J 5 HOH D 6 2006 2006 HOH HOH . 
J 5 HOH D 7 2007 2007 HOH HOH . 
J 5 HOH D 8 2008 2008 HOH HOH . 
J 5 HOH D 9 2009 2009 HOH HOH . 
J 5 HOH D 10 2010 2010 HOH HOH . 
J 5 HOH D 11 2011 2011 HOH HOH . 
J 5 HOH D 12 2012 2012 HOH HOH . 
J 5 HOH D 13 2013 2013 HOH HOH . 
J 5 HOH D 14 2014 2014 HOH HOH . 
J 5 HOH D 15 2015 2015 HOH HOH . 
J 5 HOH D 16 2016 2016 HOH HOH . 
K 5 HOH E 1 2001 2001 HOH HOH . 
K 5 HOH E 2 2002 2002 HOH HOH . 
K 5 HOH E 3 2003 2003 HOH HOH . 
K 5 HOH E 4 2004 2004 HOH HOH . 
K 5 HOH E 5 2005 2005 HOH HOH . 
K 5 HOH E 6 2006 2006 HOH HOH . 
K 5 HOH E 7 2007 2007 HOH HOH . 
K 5 HOH E 8 2008 2008 HOH HOH . 
K 5 HOH E 9 2009 2009 HOH HOH . 
K 5 HOH E 10 2010 2010 HOH HOH . 
K 5 HOH E 11 2011 2011 HOH HOH . 
K 5 HOH E 12 2012 2012 HOH HOH . 
K 5 HOH E 13 2013 2013 HOH HOH . 
K 5 HOH E 14 2014 2014 HOH HOH . 
K 5 HOH E 15 2015 2015 HOH HOH . 
K 5 HOH E 16 2016 2016 HOH HOH . 
K 5 HOH E 17 2017 2017 HOH HOH . 
K 5 HOH E 18 2018 2018 HOH HOH . 
K 5 HOH E 19 2019 2019 HOH HOH . 
K 5 HOH E 20 2020 2020 HOH HOH . 
K 5 HOH E 21 2021 2021 HOH HOH . 
K 5 HOH E 22 2022 2022 HOH HOH . 
K 5 HOH E 23 2023 2023 HOH HOH . 
K 5 HOH E 24 2024 2024 HOH HOH . 
K 5 HOH E 25 2025 2025 HOH HOH . 
K 5 HOH E 26 2026 2026 HOH HOH . 
K 5 HOH E 27 2027 2027 HOH HOH . 
K 5 HOH E 28 2028 2028 HOH HOH . 
K 5 HOH E 29 2029 2029 HOH HOH . 
K 5 HOH E 30 2030 2030 HOH HOH . 
K 5 HOH E 31 2031 2031 HOH HOH . 
K 5 HOH E 32 2032 2032 HOH HOH . 
K 5 HOH E 33 2033 2033 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 JEF . . . G 4 24.118 -1.924 14.134 0.5 50.28 ? C4 JEF 1039 E 1 
HETATM 2 O O3 JEF . . . G 4 25.314 -1.202 13.936 0.5 52.65 ? O3 JEF 1039 E 1 
HETATM 3 C C7 JEF . . . G 4 25.887 -1.372 12.657 0.5 49.09 ? C7 JEF 1039 E 1 
HETATM 4 C C9 JEF . . . G 4 25.041 -0.629 11.637 0.5 54.17 ? C9 JEF 1039 E 1 
HETATM 5 C C8 JEF . . . G 4 27.357 -0.917 12.682 0.5 46.92 ? C8 JEF 1039 E 1 
HETATM 6 O O4 JEF . . . G 4 27.669 0.161 11.826 0.5 49.63 ? O4 JEF 1039 E 1 
HETATM 7 C C11 JEF . . . G 4 28.226 -0.112 10.559 0.5 48.85 ? C11 JEF 1039 E 1 
HETATM 8 C C12 JEF . . . G 4 29.558 -0.876 10.653 0.5 46.77 ? C12 JEF 1039 E 1 
HETATM 9 C C10 JEF . . . G 4 28.424 1.214 9.804 0.5 44.02 ? C10 JEF 1039 E 1 
HETATM 10 O O5 JEF . . . G 4 27.716 1.149 8.586 0.5 48.01 ? O5 JEF 1039 E 1 
HETATM 11 C C13 JEF . . . G 4 28.36 0.932 7.342 0.5 43.38 ? C13 JEF 1039 E 1 
HETATM 12 C C15 JEF . . . G 4 27.444 0.025 6.542 0.5 39.94 ? C15 JEF 1039 E 1 
HETATM 13 C C14 JEF . . . G 4 29.766 0.307 7.377 0.5 48.93 ? C14 JEF 1039 E 1 
HETATM 14 O O6 JEF . . . G 4 29.988 -0.441 6.19 0.5 37.72 ? O6 JEF 1039 E 1 
HETATM 15 C C16 JEF . . . G 4 31.021 0.013 5.344 0.5 37.88 ? C16 JEF 1039 E 1 
HETATM 16 C C30 JEF . . . G 4 32.375 0.002 6.062 0.5 39.38 ? C30 JEF 1039 E 1 
HETATM 17 H H7 JEF . . . G 4 25.866 -2.317 12.437 0.5 58.9 ? H7 JEF 1039 E 1 
HETATM 18 H H91 JEF . . . G 4 24.833 -1.22 10.896 0.5 65.01 ? H91 JEF 1039 E 1 
HETATM 19 H H92 JEF . . . G 4 24.217 -0.333 12.055 0.5 65.01 ? H92 JEF 1039 E 1 
HETATM 20 H H93 JEF . . . G 4 25.532 0.14 11.309 0.5 65.01 ? H93 JEF 1039 E 1 
HETATM 21 H H81 JEF . . . G 4 27.595 -0.669 13.589 0.5 56.3 ? H81 JEF 1039 E 1 
HETATM 22 H H82 JEF . . . G 4 27.908 -1.672 12.423 0.5 56.3 ? H82 JEF 1039 E 1 
HETATM 23 H H11 JEF . . . G 4 27.597 -0.657 10.06 0.5 58.62 ? H11 JEF 1039 E 1 
HETATM 24 H H121 JEF . . . G 4 29.551 -1.618 10.03 0.5 56.12 ? H121 JEF 1039 E 1 
HETATM 25 H H122 JEF . . . G 4 29.675 -1.212 11.556 0.5 56.12 ? H122 JEF 1039 E 1 
HETATM 26 H H123 JEF . . . G 4 30.29 -0.277 10.434 0.5 56.12 ? H123 JEF 1039 E 1 
HETATM 27 H H101 JEF . . . G 4 28.091 1.952 10.338 0.5 52.82 ? H101 JEF 1039 E 1 
HETATM 28 H H102 JEF . . . G 4 29.368 1.345 9.623 0.5 52.82 ? H102 JEF 1039 E 1 
HETATM 29 H H13 JEF . . . G 4 28.421 1.784 6.882 0.5 52.06 ? H13 JEF 1039 E 1 
HETATM 30 H H151 JEF . . . G 4 27.859 -0.182 5.689 0.5 47.92 ? H151 JEF 1039 E 1 
HETATM 31 H H152 JEF . . . G 4 27.292 -0.797 7.034 0.5 47.92 ? H152 JEF 1039 E 1 
HETATM 32 H H153 JEF . . . G 4 26.597 0.473 6.39 0.5 47.92 ? H153 JEF 1039 E 1 
HETATM 33 H H141 JEF . . . G 4 29.851 -0.275 8.149 0.5 58.71 ? H141 JEF 1039 E 1 
HETATM 34 H H142 JEF . . . G 4 30.427 1.013 7.437 0.5 58.71 ? H142 JEF 1039 E 1 
HETATM 35 H H161 JEF . . . G 4 31.068 -0.553 4.558 0.5 45.45 ? H161 JEF 1039 E 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#