data_5FVA # _model_server_result.job_id vHvMhT-S7xdxFtrQdIXNmg _model_server_result.datetime_utc '2024-10-28 14:24:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1000}' # _entry.id 5FVA # _exptl.entry_id 5FVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FVA _cell.length_a 174.615 _cell.length_b 174.615 _cell.length_c 89.824 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 PISA hexameric 6 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,H 1 1,2,3,4,5,6 A,B,G,L 2 1,7,8 D,I 3 1,2,4,3,5,6 E,F,J,K,M 4 1,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_255 -x+y-3,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -523.845 0 0 3 'crystal symmetry operation' 6_675 x-y+1,x+2,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 302.442052 0 4 'crystal symmetry operation' 4_375 -x-2,-y+2,z -1 0 0 0 -1 0 0 0 1 -523.845 302.442052 0 5 'crystal symmetry operation' 2_585 -y,x-y+3,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -261.9225 453.663078 0 6 'crystal symmetry operation' 5_345 y-2,-x+y-1,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -261.9225 -151.221026 0 7 'crystal symmetry operation' 2_695 -y+1,x-y+4,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -174.615 604.884104 0 8 'crystal symmetry operation' 3_265 -x+y-3,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -611.1525 151.221026 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FVA _atom_sites.fract_transf_matrix[1][1] 0.005727 _atom_sites.fract_transf_matrix[1][2] 0.003306 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NA A 1 1000 1000 NA NA . H 2 NA C 1 1000 1000 NA NA . I 2 NA D 1 1000 1000 NA NA . J 2 NA E 1 1000 1000 NA NA . K 2 NA F 1 1000 1000 NA NA . L 3 HOH A 1 2001 2001 HOH HOH . L 3 HOH A 2 2003 2003 HOH HOH . M 3 HOH E 1 2002 2002 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x -249.589 _atom_site.Cartn_y 201.708 _atom_site.Cartn_z 53.279 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1000 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #