data_5FVO # _model_server_result.job_id iK3i1kAyxkxw0s8RR6JmXA _model_server_result.datetime_utc '2024-11-13 07:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":750}' # _entry.id 5FVO # _exptl.entry_id 5FVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FVO _cell.length_a 44.9 _cell.length_b 108.2 _cell.length_c 164.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 3_755 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 A SG CYS 35 A CYS 331 3_755 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 209 n n CHA C4D HEM doub 210 n n CHA HHA HEM sing 211 n n CHB C4A HEM sing 212 n n CHB C1B HEM doub 213 n n CHB HHB HEM sing 214 n n CHC C4B HEM sing 215 n n CHC C1C HEM doub 216 n n CHC HHC HEM sing 217 n n CHD C4C HEM doub 218 n n CHD C1D HEM sing 219 n n CHD HHD HEM sing 220 n n C1A C2A HEM doub 221 n y C1A NA HEM sing 222 n y C2A C3A HEM sing 223 n y C2A CAA HEM sing 224 n n C3A C4A HEM doub 225 n y C3A CMA HEM sing 226 n n C4A NA HEM sing 227 n y CMA HMA HEM sing 228 n n CMA HMAA HEM sing 229 n n CMA HMAB HEM sing 230 n n CAA CBA HEM sing 231 n n CAA HAA HEM sing 232 n n CAA HAAA HEM sing 233 n n CBA CGA HEM sing 234 n n CBA HBA HEM sing 235 n n CBA HBAA HEM sing 236 n n CGA O1A HEM doub 237 n n CGA O2A HEM sing 238 n n C1B C2B HEM sing 239 n n C1B NB HEM sing 240 n n C2B C3B HEM doub 241 n n C2B CMB HEM sing 242 n n C3B C4B HEM sing 243 n n C3B CAB HEM sing 244 n n C4B NB HEM doub 245 n n CMB HMB HEM sing 246 n n CMB HMBA HEM sing 247 n n CMB HMBB HEM sing 248 n n CAB CBB HEM doub 249 n n CAB HAB HEM sing 250 n n CBB HBB HEM sing 251 n n CBB HBBA HEM sing 252 n n C1C C2C HEM sing 253 n y C1C NC HEM sing 254 n y C2C C3C HEM doub 255 n y C2C CMC HEM sing 256 n n C3C C4C HEM sing 257 n y C3C CAC HEM sing 258 n n C4C NC HEM sing 259 n y CMC HMC HEM sing 260 n n CMC HMCA HEM sing 261 n n CMC HMCB HEM sing 262 n n CAC CBC HEM doub 263 n n CAC HAC HEM sing 264 n n CBC HBC HEM sing 265 n n CBC HBCA HEM sing 266 n n C1D C2D HEM sing 267 n n C1D ND HEM doub 268 n n C2D C3D HEM doub 269 n n C2D CMD HEM sing 270 n n C3D C4D HEM sing 271 n n C3D CAD HEM sing 272 n n C4D ND HEM sing 273 n n CMD HMD HEM sing 274 n n CMD HMDA HEM sing 275 n n CMD HMDB HEM sing 276 n n CAD CBD HEM sing 277 n n CAD HAD HEM sing 278 n n CAD HADA HEM sing 279 n n CBD CGD HEM sing 280 n n CBD HBD HEM sing 281 n n CBD HBDA HEM sing 282 n n CGD O1D HEM doub 283 n n CGD O2D HEM sing 284 n n O2A H2A HEM sing 285 n n O2D H2D HEM sing 286 n n FE NA HEM sing 287 n n FE NB HEM sing 288 n n FE NC HEM sing 289 n n FE ND HEM sing 290 n n # _atom_sites.entry_id 5FVO _atom_sites.fract_transf_matrix[1][1] 0.022272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 750 750 HEM HEM . C 3 H4B A 1 760 760 H4B H4B . D 4 D8H A 1 800 800 D8H D8H . E 5 ZN A 1 900 900 ZN ZN . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 45.74 4.462 26.424 1 43.35 ? CHA HEM 750 A 1 HETATM 2 C CHB HEM . . . B 2 48.879 0.782 26.081 1 27.17 ? CHB HEM 750 A 1 HETATM 3 C CHC HEM . . . B 2 50.24 2.338 21.637 1 35.17 ? CHC HEM 750 A 1 HETATM 4 C CHD HEM . . . B 2 47.968 6.538 22.565 1 32.65 ? CHD HEM 750 A 1 HETATM 5 C C1A HEM . . . B 2 46.366 3.25 26.653 1 34.37 ? C1A HEM 750 A 1 HETATM 6 C C2A HEM . . . B 2 46.016 2.259 27.644 1 33.06 ? C2A HEM 750 A 1 HETATM 7 C C3A HEM . . . B 2 46.874 1.242 27.561 1 33.96 ? C3A HEM 750 A 1 HETATM 8 C C4A HEM . . . B 2 47.817 1.546 26.505 1 28.68 ? C4A HEM 750 A 1 HETATM 9 C CMA HEM . . . B 2 46.83 -0.021 28.463 1 25.48 ? CMA HEM 750 A 1 HETATM 10 C CAA HEM . . . B 2 44.839 2.322 28.633 1 25.04 ? CAA HEM 750 A 1 HETATM 11 C CBA HEM . . . B 2 43.565 1.941 27.878 1 42.2 ? CBA HEM 750 A 1 HETATM 12 C CGA HEM . . . B 2 42.463 1.488 28.809 1 60.01 ? CGA HEM 750 A 1 HETATM 13 O O1A HEM . . . B 2 41.267 1.663 28.445 1 72.21 ? O1A HEM 750 A 1 HETATM 14 O O2A HEM . . . B 2 42.771 0.95 29.905 1 51.52 ? O2A HEM 750 A 1 HETATM 15 C C1B HEM . . . B 2 49.479 0.861 24.839 1 43.91 ? C1B HEM 750 A 1 HETATM 16 C C2B HEM . . . B 2 50.359 -0.147 24.284 1 48.71 ? C2B HEM 750 A 1 HETATM 17 C C3B HEM . . . B 2 50.761 0.262 23.079 1 36.84 ? C3B HEM 750 A 1 HETATM 18 C C4B HEM . . . B 2 50.129 1.552 22.791 1 42.03 ? C4B HEM 750 A 1 HETATM 19 C CMB HEM . . . B 2 50.782 -1.457 25.002 1 32.48 ? CMB HEM 750 A 1 HETATM 20 C CAB HEM . . . B 2 51.712 -0.574 22.202 1 35.11 ? CAB HEM 750 A 1 HETATM 21 C CBB HEM . . . B 2 52.463 -0.032 21.235 1 36.05 ? CBB HEM 750 A 1 HETATM 22 C C1C HEM . . . B 2 49.708 3.602 21.457 1 34 ? C1C HEM 750 A 1 HETATM 23 C C2C HEM . . . B 2 49.779 4.451 20.264 1 47.75 ? C2C HEM 750 A 1 HETATM 24 C C3C HEM . . . B 2 49.126 5.601 20.542 1 46.23 ? C3C HEM 750 A 1 HETATM 25 C C4C HEM . . . B 2 48.656 5.538 21.911 1 34.89 ? C4C HEM 750 A 1 HETATM 26 C CMC HEM . . . B 2 50.443 4.039 18.924 1 23.58 ? CMC HEM 750 A 1 HETATM 27 C CAC HEM . . . B 2 48.916 6.866 19.682 1 36.01 ? CAC HEM 750 A 1 HETATM 28 C CBC HEM . . . B 2 49.874 7.275 18.85 1 43.49 ? CBC HEM 750 A 1 HETATM 29 C C1D HEM . . . B 2 47.12 6.363 23.644 1 39.05 ? C1D HEM 750 A 1 HETATM 30 C C2D HEM . . . B 2 46.138 7.323 24.073 1 30.04 ? C2D HEM 750 A 1 HETATM 31 C C3D HEM . . . B 2 45.443 6.684 25.272 1 28.12 ? C3D HEM 750 A 1 HETATM 32 C C4D HEM . . . B 2 46.069 5.394 25.45 1 37.96 ? C4D HEM 750 A 1 HETATM 33 C CMD HEM . . . B 2 45.843 8.713 23.459 1 29.64 ? CMD HEM 750 A 1 HETATM 34 C CAD HEM . . . B 2 44.314 7.312 26.107 1 25.8 ? CAD HEM 750 A 1 HETATM 35 C CBD HEM . . . B 2 43.002 6.68 25.679 1 37.32 ? CBD HEM 750 A 1 HETATM 36 C CGD HEM . . . B 2 41.897 7.462 26.317 1 51.1 ? CGD HEM 750 A 1 HETATM 37 O O1D HEM . . . B 2 42.211 8.481 26.983 1 58.62 ? O1D HEM 750 A 1 HETATM 38 O O2D HEM . . . B 2 40.714 7.068 26.164 1 56.46 ? O2D HEM 750 A 1 HETATM 39 N NA HEM . . . B 2 47.474 2.779 25.981 1 35.68 ? NA HEM 750 A 1 HETATM 40 N NB HEM . . . B 2 49.364 1.885 23.905 1 35.28 ? NB HEM 750 A 1 HETATM 41 N NC HEM . . . B 2 49.017 4.31 22.419 1 35.94 ? NC HEM 750 A 1 HETATM 42 N ND HEM . . . B 2 47.058 5.248 24.488 1 24.82 ? ND HEM 750 A 1 HETATM 43 FE FE HEM . . . B 2 48.513 3.745 24.364 1 32.17 ? FE HEM 750 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #