data_5FVO # _model_server_result.job_id RqVhvyF21NvtgvyW-fKHbw _model_server_result.datetime_utc '2024-11-23 02:43:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":760}' # _entry.id 5FVO # _exptl.entry_id 5FVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FVO _cell.length_a 44.9 _cell.length_b 108.2 _cell.length_c 164.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 3_755 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 A SG CYS 35 A CYS 331 3_755 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 176 n y N1 C8A H4B sing 177 n y C2 N2 H4B sing 178 n n C2 N3 H4B sing 179 n y N2 HN21 H4B sing 180 n n N2 HN22 H4B sing 181 n n N3 C4 H4B sing 182 n y N3 HN3 H4B sing 183 n n C4 O4 H4B doub 184 n n C4 C4A H4B sing 185 n y C4A C8A H4B doub 186 n y C4A N5 H4B sing 187 n n C8A N8 H4B sing 188 n n N5 C6 H4B sing 189 n n N5 HN5 H4B sing 190 n n N8 C7 H4B sing 191 n n N8 HN8 H4B sing 192 n n C6 C7 H4B sing 193 n n C6 C9 H4B sing 194 n n C6 H6 H4B sing 195 n n C7 H71 H4B sing 196 n n C7 H72 H4B sing 197 n n C9 O9 H4B sing 198 n n C9 C10 H4B sing 199 n n C9 H9 H4B sing 200 n n O9 HO9 H4B sing 201 n n C10 C11 H4B sing 202 n n C10 O10 H4B sing 203 n n C10 H10 H4B sing 204 n n C11 H111 H4B sing 205 n n C11 H112 H4B sing 206 n n C11 H113 H4B sing 207 n n O10 HO0 H4B sing 208 n n # _atom_sites.entry_id 5FVO _atom_sites.fract_transf_matrix[1][1] 0.022272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 750 750 HEM HEM . C 3 H4B A 1 760 760 H4B H4B . D 4 D8H A 1 800 800 D8H D8H . E 5 ZN A 1 900 900 ZN ZN . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . C 3 42.461 2.997 33.864 1 47.79 ? N1 H4B 760 A 1 HETATM 2 C C2 H4B . . . C 3 42.478 2.514 32.607 1 48.18 ? C2 H4B 760 A 1 HETATM 3 N N2 H4B . . . C 3 43.658 2.054 32.112 1 52.28 ? N2 H4B 760 A 1 HETATM 4 N N3 H4B . . . C 3 41.341 2.498 31.856 1 50.14 ? N3 H4B 760 A 1 HETATM 5 C C4 H4B . . . C 3 40.166 2.961 32.359 1 50.37 ? C4 H4B 760 A 1 HETATM 6 O O4 H4B . . . C 3 39.122 2.944 31.654 1 50.49 ? O4 H4B 760 A 1 HETATM 7 C C4A H4B . . . C 3 40.143 3.472 33.655 1 47.08 ? C4A H4B 760 A 1 HETATM 8 C C8A H4B . . . C 3 41.309 3.471 34.395 1 48.2 ? C8A H4B 760 A 1 HETATM 9 N N5 H4B . . . C 3 39.009 3.955 34.219 1 46.06 ? N5 H4B 760 A 1 HETATM 10 N N8 H4B . . . C 3 41.315 3.959 35.656 1 46.13 ? N8 H4B 760 A 1 HETATM 11 C C6 H4B . . . C 3 39.123 4.931 35.284 1 48.99 ? C6 H4B 760 A 1 HETATM 12 C C7 H4B . . . C 3 40.106 4.421 36.325 1 53.38 ? C7 H4B 760 A 1 HETATM 13 C C9 H4B . . . C 3 37.776 5.275 35.938 1 51.34 ? C9 H4B 760 A 1 HETATM 14 O O9 H4B . . . C 3 37.065 4.079 36.309 1 45.84 ? O9 H4B 760 A 1 HETATM 15 C C10 H4B . . . C 3 37.987 6.179 37.167 1 52.74 ? C10 H4B 760 A 1 HETATM 16 C C11 H4B . . . C 3 36.699 6.496 37.936 1 32.12 ? C11 H4B 760 A 1 HETATM 17 O O10 H4B . . . C 3 38.611 7.398 36.752 1 55.93 ? O10 H4B 760 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #