data_5FVO # _model_server_result.job_id uwW-9dLzWRkthdOICadO3w _model_server_result.datetime_utc '2024-11-13 07:12:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 5FVO # _exptl.entry_id 5FVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.399 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2-(5-(3-methoxypropylamino)pyridin-3-yl)ethyl)-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FVO _cell.length_a 44.9 _cell.length_b 108.2 _cell.length_c 164.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 3_755 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 A SG CYS 35 A CYS 331 3_755 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C17 H24 N4 O' _chem_comp.formula_weight 300.399 _chem_comp.id D8H _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2-(5-(3-methoxypropylamino)pyridin-3-yl)ethyl)-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C02 D8H sing 83 n n C02 C03 D8H sing 84 n y C02 N01 D8H doub 85 n y C03 C04 D8H doub 86 n y C04 C07 D8H sing 87 n n C04 C05 D8H sing 88 n y C05 C06 D8H doub 89 n y N01 C06 D8H sing 90 n y C06 C08 D8H sing 91 n n C08 C09 D8H sing 92 n n C09 C13 D8H sing 93 n n C13 C12 D8H sing 94 n y C13 C14 D8H doub 95 n y C12 N11 D8H doub 96 n y C14 C15 D8H sing 97 n y C15 C16 D8H doub 98 n y C15 N17 D8H sing 99 n n C16 N11 D8H sing 100 n y N17 C18 D8H sing 101 n n C18 C19 D8H sing 102 n n C19 C20 D8H sing 103 n n C20 O21 D8H sing 104 n n O21 C22 D8H sing 105 n n N02 H021 D8H sing 106 n n N02 H022 D8H sing 107 n n C03 H03 D8H sing 108 n n C07 H071 D8H sing 109 n n C07 H072 D8H sing 110 n n C07 H073 D8H sing 111 n n C05 H05 D8H sing 112 n n C08 H081 D8H sing 113 n n C08 H082 D8H sing 114 n n C09 H091 D8H sing 115 n n C09 H092 D8H sing 116 n n C12 H12 D8H sing 117 n n C14 H14 D8H sing 118 n n C16 H16 D8H sing 119 n n N17 H17 D8H sing 120 n n C18 H181 D8H sing 121 n n C18 H182 D8H sing 122 n n C19 H191 D8H sing 123 n n C19 H192 D8H sing 124 n n C20 H201 D8H sing 125 n n C20 H202 D8H sing 126 n n C22 H221 D8H sing 127 n n C22 H222 D8H sing 128 n n C22 H223 D8H sing 129 n n # _atom_sites.entry_id 5FVO _atom_sites.fract_transf_matrix[1][1] 0.022272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 750 750 HEM HEM . C 3 H4B A 1 760 760 H4B H4B . D 4 D8H A 1 800 800 D8H D8H . E 5 ZN A 1 900 900 ZN ZN . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N02 D8H . . . D 4 46.863 -1.051 23.748 1 30.64 ? N02 D8H 800 A 1 HETATM 2 C C02 D8H . . . D 4 46.216 0.052 23.276 1 40.81 ? C02 D8H 800 A 1 HETATM 3 C C03 D8H . . . D 4 46.657 0.676 22.099 1 33.47 ? C03 D8H 800 A 1 HETATM 4 C C04 D8H . . . D 4 45.984 1.79 21.617 1 37.11 ? C04 D8H 800 A 1 HETATM 5 C C07 D8H . . . D 4 46.433 2.492 20.355 1 36.58 ? C07 D8H 800 A 1 HETATM 6 C C05 D8H . . . D 4 44.893 2.271 22.327 1 42.31 ? C05 D8H 800 A 1 HETATM 7 N N01 D8H . . . D 4 45.143 0.54 23.935 1 41.09 ? N01 D8H 800 A 1 HETATM 8 C C06 D8H . . . D 4 44.489 1.635 23.487 1 42.91 ? C06 D8H 800 A 1 HETATM 9 C C08 D8H . . . D 4 43.292 2.177 24.225 1 40.58 ? C08 D8H 800 A 1 HETATM 10 C C09 D8H . . . D 4 42.065 1.429 23.732 1 41.13 ? C09 D8H 800 A 1 HETATM 11 C C13 D8H . . . D 4 40.842 1.876 24.501 1 47.93 ? C13 D8H 800 A 1 HETATM 12 C C12 D8H . . . D 4 39.852 0.938 24.792 1 49.5 ? C12 D8H 800 A 1 HETATM 13 C C14 D8H . . . D 4 40.697 3.195 24.933 1 46.58 ? C14 D8H 800 A 1 HETATM 14 C C15 D8H . . . D 4 39.545 3.523 25.645 1 49.4 ? C15 D8H 800 A 1 HETATM 15 C C16 D8H . . . D 4 38.589 2.541 25.891 1 44.54 ? C16 D8H 800 A 1 HETATM 16 N N11 D8H . . . D 4 38.752 1.282 25.477 1 39.88 ? N11 D8H 800 A 1 HETATM 17 N N17 D8H . . . D 4 39.32 4.78 26.094 1 53.3 ? N17 D8H 800 A 1 HETATM 18 C C18 D8H . . . D 4 38.234 5.01 27.034 1 61.21 ? C18 D8H 800 A 1 HETATM 19 C C19 D8H . . . D 4 37.067 5.834 26.495 1 70.43 ? C19 D8H 800 A 1 HETATM 20 C C20 D8H . . . D 4 36.798 7.017 27.426 1 77.5 ? C20 D8H 800 A 1 HETATM 21 O O21 D8H . . . D 4 35.402 7.192 27.703 1 83.75 ? O21 D8H 800 A 1 HETATM 22 C C22 D8H . . . D 4 34.738 5.988 28.097 1 86.8 ? C22 D8H 800 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #