data_5FWT # _model_server_result.job_id 2gf1eQhzm52NNa6m04wvUg _model_server_result.datetime_utc '2024-12-28 02:55:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fwt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1325}' # _entry.id 5FWT # _exptl.entry_id 5FWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FWT _cell.length_a 50.538 _cell.length_b 50.538 _cell.length_c 187.402 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 32 1_555 A SG CYS 125 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 66 A CYS 55 1_555 A SG CYS 106 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 95 A CYS 84 1_555 A SG CYS 120 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 133 A CYS 122 1_555 A SG CYS 197 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 A SG CYS 158 A CYS 147 1_555 A SG CYS 178 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf6 A SG CYS 162 A CYS 151 1_555 A SG CYS 180 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf7 A SG CYS 201 A CYS 190 1_555 A SG CYS 209 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? disulf ? disulf8 A SG CYS 225 A CYS 214 1_555 A SG CYS 251 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A ND2 ASN 56 A ASN 45 1_555 B C1 NAG . A NAG 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 70 A ASN 59 1_555 C C1 NAG . A NAG 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 304 A ASN 293 1_555 D C1 NAG . A NAG 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A OD2 ASP 274 A ASP 263 1_555 E CA CA . A CA 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc2 A OD2 ASP 277 A ASP 266 1_555 E CA CA . A CA 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 A OD1 ASP 277 A ASP 266 1_555 E CA CA . A CA 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc4 A OD1 ASP 317 A ASP 306 1_555 E CA CA . A CA 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc5 A O ASN 320 A ASN 309 1_555 E CA CA . A CA 1326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 E CA CA . A CA 1326 1_555 G O HOH . A HOH 2056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5FWT _atom_sites.fract_transf_matrix[1][1] 0.019787 _atom_sites.fract_transf_matrix[1][2] 0.011424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1323 1323 NAG NAG . C 2 NAG A 1 1324 1324 NAG NAG . D 2 NAG A 1 1325 1325 NAG NAG . E 3 CA A 1 1326 1326 CA CA . F 4 PO4 A 1 1327 1327 PO4 PO4 . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . G 5 HOH A 52 2052 2052 HOH HOH . G 5 HOH A 53 2053 2053 HOH HOH . G 5 HOH A 54 2054 2054 HOH HOH . G 5 HOH A 55 2055 2055 HOH HOH . G 5 HOH A 56 2056 2056 HOH HOH . G 5 HOH A 57 2057 2057 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 -4.044 -20.653 -22.46 1 67.51 ? C1 NAG 1325 A 1 HETATM 2 C C2 NAG . . . D 2 -4.051 -22.18 -22.246 1 78.67 ? C2 NAG 1325 A 1 HETATM 3 C C3 NAG . . . D 2 -3.323 -22.945 -23.349 1 80.87 ? C3 NAG 1325 A 1 HETATM 4 C C4 NAG . . . D 2 -3.669 -22.363 -24.718 1 81.17 ? C4 NAG 1325 A 1 HETATM 5 C C5 NAG . . . D 2 -3.324 -20.867 -24.7 1 81.09 ? C5 NAG 1325 A 1 HETATM 6 C C6 NAG . . . D 2 -3.36 -20.168 -26.053 1 81.18 ? C6 NAG 1325 A 1 HETATM 7 C C7 NAG . . . D 2 -4.105 -22.93 -19.901 1 80.15 ? C7 NAG 1325 A 1 HETATM 8 C C8 NAG . . . D 2 -3.342 -23.166 -18.625 1 73.37 ? C8 NAG 1325 A 1 HETATM 9 N N2 NAG . . . D 2 -3.421 -22.457 -20.949 1 78.6 ? N2 NAG 1325 A 1 HETATM 10 O O3 NAG . . . D 2 -3.663 -24.333 -23.299 1 84.43 ? O3 NAG 1325 A 1 HETATM 11 O O4 NAG . . . D 2 -2.932 -23.061 -25.724 1 82.04 ? O4 NAG 1325 A 1 HETATM 12 O O5 NAG . . . D 2 -4.23 -20.203 -23.805 1 71.03 ? O5 NAG 1325 A 1 HETATM 13 O O6 NAG . . . D 2 -2.845 -18.85 -25.825 1 79.37 ? O6 NAG 1325 A 1 HETATM 14 O O7 NAG . . . D 2 -5.298 -23.167 -19.984 1 86.4 ? O7 NAG 1325 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 525 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #