data_5FWX
#
_model_server_result.job_id            TgIaMAOUwJCbtOjKTSPOCQ 
_model_server_result.datetime_utc      '2024-12-26 11:45:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fwx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1379}' 
#
_entry.id    5FWX 
#
_exptl.entry_id    5FWX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.02 
_cell.angle_gamma         90 
_cell.entry_id            5FWX 
_cell.length_a            61.07 
_cell.length_b            156.63 
_cell.length_c            77.12 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FWX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,D,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 57 1_555 A SG CYS 306 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf2 B SG CYS 63 B CYS 63 1_555 B SG CYS 310 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 C SG CYS 54 C CYS 57 1_555 C SG CYS 306 C CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 D SG CYS 63 D CYS 63 1_555 D SG CYS 310 D CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
covale ? covale1 A ND2 ASN 346 A ASN 349 1_555 F C1 NAG . A NAG 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 B ND2 ASN 350 B ASN 350 1_555 H C1 NAG . B NAG 1380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5FWX 
_atom_sites.fract_transf_matrix[1][1]    0.016375 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000006 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006384 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 1378 1378 SO4 SO4 . 
F 4 NAG A 1 1379 1379 NAG NAG . 
G 3 SO4 B 1 1379 1379 SO4 SO4 . 
H 4 NAG B 1 1380 1380 NAG NAG . 
I 3 SO4 C 1 1400 1400 SO4 SO4 . 
J 3 SO4 D 1 1380 1380 SO4 SO4 . 
K 4 NAG D 1 1381 1381 NAG NAG . 
L 5 HOH A 1 2001 2001 HOH HOH . 
L 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH A 3 2003 2003 HOH HOH . 
L 5 HOH A 4 2004 2004 HOH HOH . 
L 5 HOH A 5 2005 2005 HOH HOH . 
L 5 HOH A 6 2006 2006 HOH HOH . 
L 5 HOH A 7 2007 2007 HOH HOH . 
L 5 HOH A 8 2008 2008 HOH HOH . 
L 5 HOH A 9 2009 2009 HOH HOH . 
L 5 HOH A 10 2010 2010 HOH HOH . 
L 5 HOH A 11 2011 2011 HOH HOH . 
L 5 HOH A 12 2012 2012 HOH HOH . 
L 5 HOH A 13 2013 2013 HOH HOH . 
L 5 HOH A 14 2014 2014 HOH HOH . 
L 5 HOH A 15 2015 2015 HOH HOH . 
L 5 HOH A 16 2016 2016 HOH HOH . 
L 5 HOH A 17 2017 2017 HOH HOH . 
L 5 HOH A 18 2018 2018 HOH HOH . 
L 5 HOH A 19 2019 2019 HOH HOH . 
L 5 HOH A 20 2020 2020 HOH HOH . 
L 5 HOH A 21 2021 2021 HOH HOH . 
L 5 HOH A 22 2022 2022 HOH HOH . 
L 5 HOH A 23 2023 2023 HOH HOH . 
L 5 HOH A 24 2024 2024 HOH HOH . 
L 5 HOH A 25 2025 2025 HOH HOH . 
L 5 HOH A 26 2026 2026 HOH HOH . 
L 5 HOH A 27 2027 2027 HOH HOH . 
L 5 HOH A 28 2028 2028 HOH HOH . 
L 5 HOH A 29 2029 2029 HOH HOH . 
L 5 HOH A 30 2030 2030 HOH HOH . 
L 5 HOH A 31 2031 2031 HOH HOH . 
L 5 HOH A 32 2032 2032 HOH HOH . 
L 5 HOH A 33 2033 2033 HOH HOH . 
L 5 HOH A 34 2034 2034 HOH HOH . 
M 5 HOH B 1 2001 2001 HOH HOH . 
M 5 HOH B 2 2002 2002 HOH HOH . 
M 5 HOH B 3 2003 2003 HOH HOH . 
M 5 HOH B 4 2004 2004 HOH HOH . 
M 5 HOH B 5 2005 2005 HOH HOH . 
M 5 HOH B 6 2006 2006 HOH HOH . 
M 5 HOH B 7 2007 2007 HOH HOH . 
M 5 HOH B 8 2008 2008 HOH HOH . 
M 5 HOH B 9 2009 2009 HOH HOH . 
M 5 HOH B 10 2010 2010 HOH HOH . 
M 5 HOH B 11 2011 2011 HOH HOH . 
M 5 HOH B 12 2012 2012 HOH HOH . 
M 5 HOH B 13 2013 2013 HOH HOH . 
M 5 HOH B 14 2014 2014 HOH HOH . 
M 5 HOH B 15 2015 2015 HOH HOH . 
M 5 HOH B 16 2016 2016 HOH HOH . 
M 5 HOH B 17 2017 2017 HOH HOH . 
M 5 HOH B 18 2018 2018 HOH HOH . 
M 5 HOH B 19 2019 2019 HOH HOH . 
M 5 HOH B 20 2020 2020 HOH HOH . 
M 5 HOH B 21 2021 2021 HOH HOH . 
M 5 HOH B 22 2022 2022 HOH HOH . 
M 5 HOH B 23 2023 2023 HOH HOH . 
M 5 HOH B 24 2024 2024 HOH HOH . 
M 5 HOH B 25 2025 2025 HOH HOH . 
M 5 HOH B 26 2026 2026 HOH HOH . 
M 5 HOH B 27 2027 2027 HOH HOH . 
M 5 HOH B 28 2028 2028 HOH HOH . 
M 5 HOH B 29 2029 2029 HOH HOH . 
M 5 HOH B 30 2030 2030 HOH HOH . 
M 5 HOH B 31 2031 2031 HOH HOH . 
M 5 HOH B 32 2032 2032 HOH HOH . 
N 5 HOH C 1 2001 2001 HOH HOH . 
N 5 HOH C 2 2002 2002 HOH HOH . 
N 5 HOH C 3 2003 2003 HOH HOH . 
N 5 HOH C 4 2004 2004 HOH HOH . 
N 5 HOH C 5 2005 2005 HOH HOH . 
N 5 HOH C 6 2006 2006 HOH HOH . 
N 5 HOH C 7 2007 2007 HOH HOH . 
N 5 HOH C 8 2008 2008 HOH HOH . 
N 5 HOH C 9 2009 2009 HOH HOH . 
N 5 HOH C 10 2010 2010 HOH HOH . 
N 5 HOH C 11 2011 2011 HOH HOH . 
N 5 HOH C 12 2012 2012 HOH HOH . 
N 5 HOH C 13 2013 2013 HOH HOH . 
N 5 HOH C 14 2014 2014 HOH HOH . 
N 5 HOH C 15 2015 2015 HOH HOH . 
N 5 HOH C 16 2016 2016 HOH HOH . 
N 5 HOH C 17 2017 2017 HOH HOH . 
N 5 HOH C 18 2018 2018 HOH HOH . 
N 5 HOH C 19 2019 2019 HOH HOH . 
N 5 HOH C 20 2020 2020 HOH HOH . 
N 5 HOH C 21 2021 2021 HOH HOH . 
N 5 HOH C 22 2022 2022 HOH HOH . 
N 5 HOH C 23 2023 2023 HOH HOH . 
N 5 HOH C 24 2024 2024 HOH HOH . 
N 5 HOH C 25 2025 2025 HOH HOH . 
N 5 HOH C 26 2026 2026 HOH HOH . 
N 5 HOH C 27 2027 2027 HOH HOH . 
N 5 HOH C 28 2028 2028 HOH HOH . 
N 5 HOH C 29 2029 2029 HOH HOH . 
N 5 HOH C 30 2030 2030 HOH HOH . 
N 5 HOH C 31 2031 2031 HOH HOH . 
N 5 HOH C 32 2032 2032 HOH HOH . 
O 5 HOH D 1 2001 2001 HOH HOH . 
O 5 HOH D 2 2002 2002 HOH HOH . 
O 5 HOH D 3 2003 2003 HOH HOH . 
O 5 HOH D 4 2004 2004 HOH HOH . 
O 5 HOH D 5 2005 2005 HOH HOH . 
O 5 HOH D 6 2006 2006 HOH HOH . 
O 5 HOH D 7 2007 2007 HOH HOH . 
O 5 HOH D 8 2008 2008 HOH HOH . 
O 5 HOH D 9 2009 2009 HOH HOH . 
O 5 HOH D 10 2010 2010 HOH HOH . 
O 5 HOH D 11 2011 2011 HOH HOH . 
O 5 HOH D 12 2012 2012 HOH HOH . 
O 5 HOH D 13 2013 2013 HOH HOH . 
O 5 HOH D 14 2014 2014 HOH HOH . 
O 5 HOH D 15 2015 2015 HOH HOH . 
O 5 HOH D 16 2016 2016 HOH HOH . 
O 5 HOH D 17 2017 2017 HOH HOH . 
O 5 HOH D 18 2018 2018 HOH HOH . 
O 5 HOH D 19 2019 2019 HOH HOH . 
O 5 HOH D 20 2020 2020 HOH HOH . 
O 5 HOH D 21 2021 2021 HOH HOH . 
O 5 HOH D 22 2022 2022 HOH HOH . 
O 5 HOH D 23 2023 2023 HOH HOH . 
O 5 HOH D 24 2024 2024 HOH HOH . 
O 5 HOH D 25 2025 2025 HOH HOH . 
O 5 HOH D 26 2026 2026 HOH HOH . 
O 5 HOH D 27 2027 2027 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 4 17.347 30.282 20.696 1 59.26 ? C1 NAG 1379 A 1 
HETATM 2 C C2 NAG . . . F 4 16.466 30.716 19.528 1 63.97 ? C2 NAG 1379 A 1 
HETATM 3 C C3 NAG . . . F 4 17.049 32.012 18.975 1 65.91 ? C3 NAG 1379 A 1 
HETATM 4 C C4 NAG . . . F 4 16.901 33.082 20.045 1 60.78 ? C4 NAG 1379 A 1 
HETATM 5 C C5 NAG . . . F 4 17.583 32.65 21.344 1 59.31 ? C5 NAG 1379 A 1 
HETATM 6 C C6 NAG . . . F 4 17.213 33.557 22.522 1 57.32 ? C6 NAG 1379 A 1 
HETATM 7 C C7 NAG . . . F 4 15.264 29.353 17.789 1 72.14 ? C7 NAG 1379 A 1 
HETATM 8 C C8 NAG . . . F 4 13.974 30.136 17.844 1 70.65 ? C8 NAG 1379 A 1 
HETATM 9 N N2 NAG . . . F 4 16.342 29.652 18.542 1 64.2 ? N2 NAG 1379 A 1 
HETATM 10 O O3 NAG . . . F 4 16.388 32.432 17.771 1 77.59 ? O3 NAG 1379 A 1 
HETATM 11 O O4 NAG . . . F 4 17.514 34.267 19.545 1 66.54 ? O4 NAG 1379 A 1 
HETATM 12 O O5 NAG . . . F 4 17.262 31.302 21.716 1 59.6 ? O5 NAG 1379 A 1 
HETATM 13 O O6 NAG . . . F 4 17.692 32.994 23.76 1 49.18 ? O6 NAG 1379 A 1 
HETATM 14 O O7 NAG . . . F 4 15.335 28.412 17.013 1 81.2 ? O7 NAG 1379 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#