data_5FXC # _model_server_result.job_id XYUFJFqFKoMYV9PU0489RA _model_server_result.datetime_utc '2024-11-22 09:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2109}' # _entry.id 5FXC # _exptl.entry_id 5FXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FXC _cell.length_a 35.349 _cell.length_b 67.875 _cell.length_c 90.889 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 156 H CYS 1023 1_555 A SG CYS 224 H CYS 1088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5FXC _atom_sites.fract_transf_matrix[1][1] 0.028289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO H 1 2107 2107 EDO EDO . D 3 EDO H 1 2108 2108 EDO EDO . E 3 EDO H 1 2109 2109 EDO EDO . F 3 EDO H 1 2110 2110 EDO EDO . G 4 HOH H 1 2001 2001 HOH HOH . G 4 HOH H 2 2002 2002 HOH HOH . G 4 HOH H 3 2003 2003 HOH HOH . G 4 HOH H 4 2004 2004 HOH HOH . G 4 HOH H 5 2005 2005 HOH HOH . G 4 HOH H 6 2006 2006 HOH HOH . G 4 HOH H 7 2007 2007 HOH HOH . G 4 HOH H 8 2008 2008 HOH HOH . G 4 HOH H 9 2009 2009 HOH HOH . G 4 HOH H 10 2010 2010 HOH HOH . G 4 HOH H 11 2011 2011 HOH HOH . G 4 HOH H 12 2012 2012 HOH HOH . G 4 HOH H 13 2013 2013 HOH HOH . G 4 HOH H 14 2014 2014 HOH HOH . G 4 HOH H 15 2015 2015 HOH HOH . G 4 HOH H 16 2016 2016 HOH HOH . G 4 HOH H 17 2017 2017 HOH HOH . G 4 HOH H 18 2018 2018 HOH HOH . G 4 HOH H 19 2019 2019 HOH HOH . G 4 HOH H 20 2020 2020 HOH HOH . G 4 HOH H 21 2021 2021 HOH HOH . G 4 HOH H 22 2022 2022 HOH HOH . G 4 HOH H 23 2023 2023 HOH HOH . G 4 HOH H 24 2024 2024 HOH HOH . G 4 HOH H 25 2025 2025 HOH HOH . G 4 HOH H 26 2026 2026 HOH HOH . G 4 HOH H 27 2027 2027 HOH HOH . G 4 HOH H 28 2028 2028 HOH HOH . G 4 HOH H 29 2029 2029 HOH HOH . G 4 HOH H 30 2030 2030 HOH HOH . G 4 HOH H 31 2031 2031 HOH HOH . G 4 HOH H 32 2032 2032 HOH HOH . G 4 HOH H 33 2033 2033 HOH HOH . G 4 HOH H 34 2034 2034 HOH HOH . G 4 HOH H 35 2035 2035 HOH HOH . G 4 HOH H 36 2036 2036 HOH HOH . G 4 HOH H 37 2037 2037 HOH HOH . G 4 HOH H 38 2038 2038 HOH HOH . G 4 HOH H 39 2039 2039 HOH HOH . G 4 HOH H 40 2040 2040 HOH HOH . G 4 HOH H 41 2041 2041 HOH HOH . G 4 HOH H 42 2042 2042 HOH HOH . G 4 HOH H 43 2043 2043 HOH HOH . G 4 HOH H 44 2044 2044 HOH HOH . G 4 HOH H 45 2045 2045 HOH HOH . G 4 HOH H 46 2046 2046 HOH HOH . G 4 HOH H 47 2047 2047 HOH HOH . G 4 HOH H 48 2048 2048 HOH HOH . G 4 HOH H 49 2049 2049 HOH HOH . G 4 HOH H 50 2050 2050 HOH HOH . G 4 HOH H 51 2051 2051 HOH HOH . G 4 HOH H 52 2052 2052 HOH HOH . G 4 HOH H 53 2053 2053 HOH HOH . G 4 HOH H 54 2054 2054 HOH HOH . G 4 HOH H 55 2055 2055 HOH HOH . G 4 HOH H 56 2056 2056 HOH HOH . G 4 HOH H 57 2057 2057 HOH HOH . G 4 HOH H 58 2058 2058 HOH HOH . G 4 HOH H 59 2059 2059 HOH HOH . G 4 HOH H 60 2060 2060 HOH HOH . G 4 HOH H 61 2061 2061 HOH HOH . G 4 HOH H 62 2062 2062 HOH HOH . G 4 HOH H 63 2063 2063 HOH HOH . G 4 HOH H 64 2064 2064 HOH HOH . G 4 HOH H 65 2065 2065 HOH HOH . G 4 HOH H 66 2066 2066 HOH HOH . G 4 HOH H 67 2067 2067 HOH HOH . G 4 HOH H 68 2068 2068 HOH HOH . G 4 HOH H 69 2069 2069 HOH HOH . G 4 HOH H 70 2070 2070 HOH HOH . G 4 HOH H 71 2071 2071 HOH HOH . G 4 HOH H 72 2072 2072 HOH HOH . G 4 HOH H 73 2073 2073 HOH HOH . G 4 HOH H 74 2074 2074 HOH HOH . G 4 HOH H 75 2075 2075 HOH HOH . G 4 HOH H 76 2076 2076 HOH HOH . G 4 HOH H 77 2077 2077 HOH HOH . G 4 HOH H 78 2078 2078 HOH HOH . G 4 HOH H 79 2079 2079 HOH HOH . G 4 HOH H 80 2080 2080 HOH HOH . H 4 HOH P 1 2001 2001 HOH HOH . H 4 HOH P 2 2002 2002 HOH HOH . H 4 HOH P 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 19.232 6.529 1.904 1 59.09 ? C1 EDO 2109 H 1 HETATM 2 O O1 EDO . . . E 3 18.388 7.555 1.35 1 57.1 ? O1 EDO 2109 H 1 HETATM 3 C C2 EDO . . . E 3 20.457 7.168 2.559 1 62.59 ? C2 EDO 2109 H 1 HETATM 4 O O2 EDO . . . E 3 21.422 6.174 2.92 1 65.81 ? O2 EDO 2109 H 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #