data_5FXM # _model_server_result.job_id Gz0K5RAtltz4Gqvr7yw1gg _model_server_result.datetime_utc '2024-10-13 09:16:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3090}' # _entry.id 5FXM # _exptl.entry_id 5FXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FXM _cell.length_a 111.974 _cell.length_b 111.974 _cell.length_c 66.031 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 74 A LEU 862 1_555 A N MSE 75 A MSE 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C MSE 75 A MSE 863 1_555 A N HIS 76 A HIS 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C ILE 100 A ILE 888 1_555 A N MSE 101 A MSE 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale4 A C MSE 101 A MSE 889 1_555 A N ASN 102 A ASN 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C ARG 157 A ARG 945 1_555 A N MSE 158 A MSE 946 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale6 A C MSE 158 A MSE 946 1_555 A N HIS 159 A HIS 947 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C PHE 165 A PHE 953 1_555 A N SEP 166 A SEP 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C SEP 166 A SEP 954 1_555 A N MSE 167 A MSE 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 167 A MSE 955 1_555 A N GLY 168 A GLY 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 A C VAL 175 A VAL 963 1_555 A N MSE 176 A MSE 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale11 A C MSE 176 A MSE 964 1_555 A N VAL 177 A VAL 965 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale12 A C PHE 186 A PHE 974 1_555 A N MSE 187 A MSE 975 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 187 A MSE 975 1_555 A N PRO 188 A PRO 976 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C ASN 235 A ASN 1023 1_555 A N MSE 236 A MSE 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale15 A C MSE 236 A MSE 1024 1_555 A N ASN 237 A ASN 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C ALA 242 A ALA 1030 1_555 A N MSE 243 A MSE 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale17 A C MSE 243 A MSE 1031 1_555 A N LYS 244 A LYS 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 B CD CD . A CD 3086 1_555 A OE1 GLU 229 A GLU 1017 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc2 B CD CD . A CD 3086 1_555 A OE2 GLU 229 A GLU 1017 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc3 B CD CD . A CD 3086 1_555 G O HOH . A HOH 2027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc4 B CD CD . A CD 3086 1_555 A SG CYS 35 A CYS 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc5 B CD CD . A CD 3086 1_555 A ND1 HIS 98 A HIS 886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc6 B CD CD . A CD 3086 1_555 A SE MSE 101 A MSE 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc7 C CD CD . A CD 3087 1_555 A NE2 HIS 297 A HIS 1085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 C CD CD . A CD 3087 1_555 A OE2 GLU 106 A GLU 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 C CD CD . A CD 3087 1_555 A OE1 GLU 291 A GLU 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc10 C CD CD . A CD 3087 1_555 A ND1 HIS 295 A HIS 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc11 C CD CD . A CD 3087 1_555 A OE1 GLU 106 A GLU 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc12 C CD CD . A CD 3087 1_555 A OE2 GLU 291 A GLU 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc13 C CD CD . A CD 3087 1_555 A ND1 HIS 288 A HIS 1076 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc14 D CD CD . A CD 3088 1_555 A OE1 GLU 219 A GLU 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc15 D CD CD . A CD 3088 1_555 A NE2 HIS 296 A HIS 1084 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc16 D CD CD . A CD 3088 1_555 G O HOH . A HOH 2050 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc17 D CD CD . A CD 3088 1_555 G O HOH . A HOH 2049 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc18 D CD CD . A CD 3088 1_555 A OE2 GLU 219 A GLU 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc19 D CD CD . A CD 3088 1_555 A NE2 HIS 294 A HIS 1082 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc20 E CD CD . A CD 3089 1_555 G O HOH . A HOH 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? metalc ? metalc21 E CD CD . A CD 3089 1_555 G O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc22 E CD CD . A CD 3089 1_555 G O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc23 E CD CD . A CD 3089 1_555 A NE2 HIS 159 A HIS 947 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc24 E CD CD . A CD 3089 1_555 A NE2 HIS 292 A HIS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc25 F CD CD . A CD 3090 1_555 A ND1 HIS 293 A HIS 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FXM _atom_sites.fract_transf_matrix[1][1] 0.008931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 3086 3086 CD CD . C 2 CD A 1 3087 3087 CD CD . D 2 CD A 1 3088 3088 CD CD . E 2 CD A 1 3089 3089 CD CD . F 2 CD A 1 3090 3090 CD CD . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . G 3 HOH A 16 2016 2016 HOH HOH . G 3 HOH A 17 2017 2017 HOH HOH . G 3 HOH A 18 2018 2018 HOH HOH . G 3 HOH A 19 2019 2019 HOH HOH . G 3 HOH A 20 2020 2020 HOH HOH . G 3 HOH A 21 2021 2021 HOH HOH . G 3 HOH A 22 2022 2022 HOH HOH . G 3 HOH A 23 2023 2023 HOH HOH . G 3 HOH A 24 2024 2024 HOH HOH . G 3 HOH A 25 2025 2025 HOH HOH . G 3 HOH A 26 2026 2026 HOH HOH . G 3 HOH A 27 2027 2027 HOH HOH . G 3 HOH A 28 2028 2028 HOH HOH . G 3 HOH A 29 2029 2029 HOH HOH . G 3 HOH A 30 2030 2030 HOH HOH . G 3 HOH A 31 2031 2031 HOH HOH . G 3 HOH A 32 2032 2032 HOH HOH . G 3 HOH A 33 2033 2033 HOH HOH . G 3 HOH A 34 2034 2034 HOH HOH . G 3 HOH A 35 2035 2035 HOH HOH . G 3 HOH A 36 2036 2036 HOH HOH . G 3 HOH A 37 2037 2037 HOH HOH . G 3 HOH A 38 2038 2038 HOH HOH . G 3 HOH A 39 2039 2039 HOH HOH . G 3 HOH A 40 2040 2040 HOH HOH . G 3 HOH A 41 2041 2041 HOH HOH . G 3 HOH A 42 2042 2042 HOH HOH . G 3 HOH A 43 2043 2043 HOH HOH . G 3 HOH A 44 2044 2044 HOH HOH . G 3 HOH A 45 2045 2045 HOH HOH . G 3 HOH A 46 2046 2046 HOH HOH . G 3 HOH A 47 2047 2047 HOH HOH . G 3 HOH A 48 2048 2048 HOH HOH . G 3 HOH A 49 2049 2049 HOH HOH . G 3 HOH A 50 2050 2050 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.163 _atom_site.Cartn_y 16.381 _atom_site.Cartn_z -1.069 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 57.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 3090 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #