data_5FY5 # _model_server_result.job_id LVQnFHgYGVA5pKi05ZCo0A _model_server_result.datetime_utc '2024-10-19 12:32:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fy5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1766}' # _entry.id 5FY5 # _exptl.entry_id 5FY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.072 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FUMARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FY5 _cell.length_a 141.68 _cell.length_b 141.68 _cell.length_c 153 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 417 A CYS 708 1_555 A SG CYS 434 A CYS 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASN 68 A ASN 91 1_555 C MN MN . A MN 1755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc2 A O THR 125 A THR 416 1_555 C MN MN . A MN 1755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc3 A NE2 HIS 208 A HIS 499 1_555 D MN MN . A MN 1756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 A OE2 GLU 210 A GLU 501 1_555 D MN MN . A MN 1756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc5 A NE2 HIS 296 A HIS 587 1_555 D MN MN . A MN 1756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 A SG CYS 401 A CYS 692 1_555 B ZN ZN . A ZN 1754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc7 A SG CYS 404 A CYS 695 1_555 B ZN ZN . A ZN 1754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc8 A SG CYS 424 A CYS 715 1_555 B ZN ZN . A ZN 1754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc9 A ND1 HIS 427 A HIS 718 1_555 B ZN ZN . A ZN 1754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 C MN MN . A MN 1755 1_555 Q O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc11 D MN MN . A MN 1756 1_555 N O8 FUM . A FUM 1766 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 D MN MN . A MN 1756 1_555 Q O HOH . A HOH 2034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc13 D MN MN . A MN 1756 1_555 Q O HOH . A HOH 2039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C4 H4 O4' _chem_comp.formula_weight 116.072 _chem_comp.id FUM _chem_comp.mon_nstd_flag . _chem_comp.name 'FUMARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C FUM sing 125 n n OXT HXT FUM sing 126 n n C O FUM doub 127 n n C C4 FUM sing 128 n n C4 C5 FUM doub 129 e n C4 H4 FUM sing 130 n n C5 C6 FUM sing 131 n n C5 H5 FUM sing 132 n n C6 O7 FUM doub 133 n n C6 O8 FUM sing 134 n n O8 HO8 FUM sing 135 n n # _atom_sites.entry_id 5FY5 _atom_sites.fract_transf_matrix[1][1] 0.007058 _atom_sites.fract_transf_matrix[1][2] 0.004075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1754 1754 ZN ZN . C 3 MN A 1 1755 1755 MN MN . D 3 MN A 1 1756 1756 MN MN . E 4 EPE A 1 1757 1757 EPE EPE . F 5 EDO A 1 1758 1758 EDO EDO . G 5 EDO A 1 1759 1759 EDO EDO . H 5 EDO A 1 1760 1760 EDO EDO . I 5 EDO A 1 1761 1761 EDO EDO . J 5 EDO A 1 1762 1762 EDO EDO . K 5 EDO A 1 1763 1763 EDO EDO . L 5 EDO A 1 1764 1764 EDO EDO . M 5 EDO A 1 1765 1765 EDO EDO . N 6 FUM A 1 1766 1766 FUM FUM . O 3 MN A 1 1767 1767 MN MN . P 3 MN A 1 1768 1768 MN MN . Q 7 HOH A 1 2001 2001 HOH HOH . Q 7 HOH A 2 2002 2002 HOH HOH . Q 7 HOH A 3 2003 2003 HOH HOH . Q 7 HOH A 4 2004 2004 HOH HOH . Q 7 HOH A 5 2005 2005 HOH HOH . Q 7 HOH A 6 2006 2006 HOH HOH . Q 7 HOH A 7 2007 2007 HOH HOH . Q 7 HOH A 8 2008 2008 HOH HOH . Q 7 HOH A 9 2009 2009 HOH HOH . Q 7 HOH A 10 2010 2010 HOH HOH . Q 7 HOH A 11 2011 2011 HOH HOH . Q 7 HOH A 12 2012 2012 HOH HOH . Q 7 HOH A 13 2013 2013 HOH HOH . Q 7 HOH A 14 2014 2014 HOH HOH . Q 7 HOH A 15 2015 2015 HOH HOH . Q 7 HOH A 16 2016 2016 HOH HOH . Q 7 HOH A 17 2017 2017 HOH HOH . Q 7 HOH A 18 2018 2018 HOH HOH . Q 7 HOH A 19 2019 2019 HOH HOH . Q 7 HOH A 20 2020 2020 HOH HOH . Q 7 HOH A 21 2021 2021 HOH HOH . Q 7 HOH A 22 2022 2022 HOH HOH . Q 7 HOH A 23 2023 2023 HOH HOH . Q 7 HOH A 24 2024 2024 HOH HOH . Q 7 HOH A 25 2025 2025 HOH HOH . Q 7 HOH A 26 2026 2026 HOH HOH . Q 7 HOH A 27 2027 2027 HOH HOH . Q 7 HOH A 28 2028 2028 HOH HOH . Q 7 HOH A 29 2029 2029 HOH HOH . Q 7 HOH A 30 2030 2030 HOH HOH . Q 7 HOH A 31 2031 2031 HOH HOH . Q 7 HOH A 32 2032 2032 HOH HOH . Q 7 HOH A 33 2033 2033 HOH HOH . Q 7 HOH A 34 2034 2034 HOH HOH . Q 7 HOH A 35 2035 2035 HOH HOH . Q 7 HOH A 36 2036 2036 HOH HOH . Q 7 HOH A 37 2037 2037 HOH HOH . Q 7 HOH A 38 2038 2038 HOH HOH . Q 7 HOH A 39 2039 2039 HOH HOH . Q 7 HOH A 40 2040 2040 HOH HOH . Q 7 HOH A 41 2041 2041 HOH HOH . Q 7 HOH A 42 2042 2042 HOH HOH . Q 7 HOH A 43 2043 2043 HOH HOH . Q 7 HOH A 44 2044 2044 HOH HOH . Q 7 HOH A 45 2045 2045 HOH HOH . Q 7 HOH A 46 2046 2046 HOH HOH . Q 7 HOH A 47 2047 2047 HOH HOH . Q 7 HOH A 48 2048 2048 HOH HOH . Q 7 HOH A 49 2049 2049 HOH HOH . Q 7 HOH A 50 2050 2050 HOH HOH . Q 7 HOH A 51 2051 2051 HOH HOH . Q 7 HOH A 52 2052 2052 HOH HOH . Q 7 HOH A 53 2053 2053 HOH HOH . Q 7 HOH A 54 2054 2054 HOH HOH . Q 7 HOH A 55 2055 2055 HOH HOH . Q 7 HOH A 56 2056 2056 HOH HOH . Q 7 HOH A 57 2057 2057 HOH HOH . Q 7 HOH A 58 2058 2058 HOH HOH . Q 7 HOH A 59 2059 2059 HOH HOH . Q 7 HOH A 60 2060 2060 HOH HOH . Q 7 HOH A 61 2061 2061 HOH HOH . Q 7 HOH A 62 2062 2062 HOH HOH . Q 7 HOH A 63 2063 2063 HOH HOH . Q 7 HOH A 64 2064 2064 HOH HOH . Q 7 HOH A 65 2065 2065 HOH HOH . Q 7 HOH A 66 2066 2066 HOH HOH . Q 7 HOH A 67 2067 2067 HOH HOH . Q 7 HOH A 68 2068 2068 HOH HOH . Q 7 HOH A 69 2069 2069 HOH HOH . Q 7 HOH A 70 2070 2070 HOH HOH . Q 7 HOH A 71 2071 2071 HOH HOH . Q 7 HOH A 72 2072 2072 HOH HOH . Q 7 HOH A 73 2073 2073 HOH HOH . Q 7 HOH A 74 2074 2074 HOH HOH . Q 7 HOH A 75 2075 2075 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT FUM . . . N 6 88.354 64.146 16.181 0.84 58.48 ? OXT FUM 1766 A 1 HETATM 2 C C FUM . . . N 6 87.813 64.005 15.101 0.84 49.08 ? C FUM 1766 A 1 HETATM 3 O O FUM . . . N 6 88.223 63.154 14.219 0.84 51.87 ? O FUM 1766 A 1 HETATM 4 C C4 FUM . . . N 6 86.647 64.848 14.768 0.84 50.79 ? C4 FUM 1766 A 1 HETATM 5 C C5 FUM . . . N 6 85.924 64.986 13.674 0.84 50.7 ? C5 FUM 1766 A 1 HETATM 6 C C6 FUM . . . N 6 84.747 65.888 13.619 0.84 59.92 ? C6 FUM 1766 A 1 HETATM 7 O O7 FUM . . . N 6 84.341 66.474 14.639 0.84 58.16 ? O7 FUM 1766 A 1 HETATM 8 O O8 FUM . . . N 6 84.14 65.96 12.459 0.84 45.61 ? O8 FUM 1766 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #