data_5FYH # _model_server_result.job_id Zf6Up0h1-Y7VrzmQkdAT5w _model_server_result.datetime_utc '2025-01-10 20:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1355}' # _entry.id 5FYH # _exptl.entry_id 5FYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.072 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FUMARIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FYH _cell.length_a 100.84 _cell.length_b 149.13 _cell.length_c 56.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 210 A HIS 188 1_555 F MN MN . A MN 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A OE2 GLU 212 A GLU 190 1_555 F MN MN . A MN 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc3 A SG CYS 256 A CYS 234 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 A NE2 HIS 262 A HIS 240 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 A NE2 HIS 298 A HIS 276 1_555 F MN MN . A MN 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 A SG CYS 328 A CYS 306 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc7 A SG CYS 330 A CYS 308 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 D O7 FUM . A FUM 1355 1_555 F MN MN . A MN 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 F MN MN . A MN 1357 1_555 O O HOH . A HOH 2034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc10 B NE2 HIS 210 B HIS 188 1_555 K MN MN . B MN 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 B OE2 GLU 212 B GLU 190 1_555 K MN MN . B MN 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc12 B SG CYS 256 B CYS 234 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc13 B NE2 HIS 262 B HIS 240 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc14 B NE2 HIS 298 B HIS 276 1_555 K MN MN . B MN 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc15 B SG CYS 328 B CYS 306 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc16 B SG CYS 330 B CYS 308 1_555 H ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc17 I OXT FUM . B FUM 1354 1_555 K MN MN . B MN 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc18 K MN MN . B MN 1356 1_555 P O HOH . B HOH 2045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc19 K MN MN . B MN 1356 1_555 P O HOH . B HOH 2048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'C4 H4 O4' _chem_comp.formula_weight 116.072 _chem_comp.id FUM _chem_comp.mon_nstd_flag . _chem_comp.name 'FUMARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C FUM sing 92 n n OXT HXT FUM sing 93 n n C O FUM doub 94 n n C C4 FUM sing 95 n n C4 C5 FUM doub 96 e n C4 H4 FUM sing 97 n n C5 C6 FUM sing 98 n n C5 H5 FUM sing 99 n n C6 O7 FUM doub 100 n n C6 O8 FUM sing 101 n n O8 HO8 FUM sing 102 n n # _atom_sites.entry_id 5FYH _atom_sites.fract_transf_matrix[1][1] 0.009917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 502 502 ZN ZN . D 3 FUM A 1 1355 1355 FUM FUM . E 4 SO4 A 1 1356 1356 SO4 SO4 . F 5 MN A 1 1357 1357 MN MN . G 6 EDO A 1 1358 1358 EDO EDO . H 2 ZN B 1 502 502 ZN ZN . I 3 FUM B 1 1354 1354 FUM FUM . J 4 SO4 B 1 1355 1355 SO4 SO4 . K 5 MN B 1 1356 1356 MN MN . L 6 EDO B 1 1357 1357 EDO EDO . M 6 EDO B 1 1358 1358 EDO EDO . N 6 EDO B 1 1359 1359 EDO EDO . O 7 HOH A 1 2001 2001 HOH HOH . O 7 HOH A 2 2002 2002 HOH HOH . O 7 HOH A 3 2003 2003 HOH HOH . O 7 HOH A 4 2004 2004 HOH HOH . O 7 HOH A 5 2005 2005 HOH HOH . O 7 HOH A 6 2006 2006 HOH HOH . O 7 HOH A 7 2007 2007 HOH HOH . O 7 HOH A 8 2008 2008 HOH HOH . O 7 HOH A 9 2009 2009 HOH HOH . O 7 HOH A 10 2010 2010 HOH HOH . O 7 HOH A 11 2011 2011 HOH HOH . O 7 HOH A 12 2012 2012 HOH HOH . O 7 HOH A 13 2013 2013 HOH HOH . O 7 HOH A 14 2014 2014 HOH HOH . O 7 HOH A 15 2015 2015 HOH HOH . O 7 HOH A 16 2016 2016 HOH HOH . O 7 HOH A 17 2017 2017 HOH HOH . O 7 HOH A 18 2018 2018 HOH HOH . O 7 HOH A 19 2019 2019 HOH HOH . O 7 HOH A 20 2020 2020 HOH HOH . O 7 HOH A 21 2021 2021 HOH HOH . O 7 HOH A 22 2022 2022 HOH HOH . O 7 HOH A 23 2023 2023 HOH HOH . O 7 HOH A 24 2024 2024 HOH HOH . O 7 HOH A 25 2025 2025 HOH HOH . O 7 HOH A 26 2026 2026 HOH HOH . O 7 HOH A 27 2027 2027 HOH HOH . O 7 HOH A 28 2028 2028 HOH HOH . O 7 HOH A 29 2029 2029 HOH HOH . O 7 HOH A 30 2030 2030 HOH HOH . O 7 HOH A 31 2031 2031 HOH HOH . O 7 HOH A 32 2032 2032 HOH HOH . O 7 HOH A 33 2033 2033 HOH HOH . O 7 HOH A 34 2034 2034 HOH HOH . O 7 HOH A 35 2035 2035 HOH HOH . O 7 HOH A 36 2036 2036 HOH HOH . O 7 HOH A 37 2037 2037 HOH HOH . O 7 HOH A 38 2038 2038 HOH HOH . O 7 HOH A 39 2039 2039 HOH HOH . O 7 HOH A 40 2040 2040 HOH HOH . O 7 HOH A 41 2041 2041 HOH HOH . O 7 HOH A 42 2042 2042 HOH HOH . O 7 HOH A 43 2043 2043 HOH HOH . O 7 HOH A 44 2044 2044 HOH HOH . O 7 HOH A 45 2045 2045 HOH HOH . O 7 HOH A 46 2046 2046 HOH HOH . O 7 HOH A 47 2047 2047 HOH HOH . O 7 HOH A 48 2048 2048 HOH HOH . O 7 HOH A 49 2049 2049 HOH HOH . O 7 HOH A 50 2050 2050 HOH HOH . O 7 HOH A 51 2051 2051 HOH HOH . O 7 HOH A 52 2052 2052 HOH HOH . O 7 HOH A 53 2053 2053 HOH HOH . O 7 HOH A 54 2054 2054 HOH HOH . O 7 HOH A 55 2055 2055 HOH HOH . O 7 HOH A 56 2056 2056 HOH HOH . O 7 HOH A 57 2057 2057 HOH HOH . O 7 HOH A 58 2058 2058 HOH HOH . O 7 HOH A 59 2059 2059 HOH HOH . O 7 HOH A 60 2060 2060 HOH HOH . O 7 HOH A 61 2061 2061 HOH HOH . O 7 HOH A 62 2062 2062 HOH HOH . O 7 HOH A 63 2063 2063 HOH HOH . O 7 HOH A 64 2064 2064 HOH HOH . O 7 HOH A 65 2065 2065 HOH HOH . O 7 HOH A 66 2066 2066 HOH HOH . O 7 HOH A 67 2067 2067 HOH HOH . O 7 HOH A 68 2068 2068 HOH HOH . O 7 HOH A 69 2069 2069 HOH HOH . O 7 HOH A 70 2070 2070 HOH HOH . O 7 HOH A 71 2071 2071 HOH HOH . O 7 HOH A 72 2072 2072 HOH HOH . O 7 HOH A 73 2073 2073 HOH HOH . O 7 HOH A 74 2074 2074 HOH HOH . O 7 HOH A 75 2075 2075 HOH HOH . O 7 HOH A 76 2076 2076 HOH HOH . O 7 HOH A 77 2077 2077 HOH HOH . O 7 HOH A 78 2078 2078 HOH HOH . O 7 HOH A 79 2079 2079 HOH HOH . O 7 HOH A 80 2080 2080 HOH HOH . O 7 HOH A 81 2081 2081 HOH HOH . O 7 HOH A 82 2082 2082 HOH HOH . O 7 HOH A 83 2083 2083 HOH HOH . O 7 HOH A 84 2084 2084 HOH HOH . O 7 HOH A 85 2085 2085 HOH HOH . O 7 HOH A 86 2086 2086 HOH HOH . O 7 HOH A 87 2087 2087 HOH HOH . P 7 HOH B 1 2001 2001 HOH HOH . P 7 HOH B 2 2002 2002 HOH HOH . P 7 HOH B 3 2003 2003 HOH HOH . P 7 HOH B 4 2004 2004 HOH HOH . P 7 HOH B 5 2005 2005 HOH HOH . P 7 HOH B 6 2006 2006 HOH HOH . P 7 HOH B 7 2007 2007 HOH HOH . P 7 HOH B 8 2008 2008 HOH HOH . P 7 HOH B 9 2009 2009 HOH HOH . P 7 HOH B 10 2010 2010 HOH HOH . P 7 HOH B 11 2011 2011 HOH HOH . P 7 HOH B 12 2012 2012 HOH HOH . P 7 HOH B 13 2013 2013 HOH HOH . P 7 HOH B 14 2014 2014 HOH HOH . P 7 HOH B 15 2015 2015 HOH HOH . P 7 HOH B 16 2016 2016 HOH HOH . P 7 HOH B 17 2017 2017 HOH HOH . P 7 HOH B 18 2018 2018 HOH HOH . P 7 HOH B 19 2019 2019 HOH HOH . P 7 HOH B 20 2020 2020 HOH HOH . P 7 HOH B 21 2021 2021 HOH HOH . P 7 HOH B 22 2022 2022 HOH HOH . P 7 HOH B 23 2023 2023 HOH HOH . P 7 HOH B 24 2024 2024 HOH HOH . P 7 HOH B 25 2025 2025 HOH HOH . P 7 HOH B 26 2026 2026 HOH HOH . P 7 HOH B 27 2027 2027 HOH HOH . P 7 HOH B 28 2028 2028 HOH HOH . P 7 HOH B 29 2029 2029 HOH HOH . P 7 HOH B 30 2030 2030 HOH HOH . P 7 HOH B 31 2031 2031 HOH HOH . P 7 HOH B 32 2032 2032 HOH HOH . P 7 HOH B 33 2033 2033 HOH HOH . P 7 HOH B 34 2034 2034 HOH HOH . P 7 HOH B 35 2035 2035 HOH HOH . P 7 HOH B 36 2036 2036 HOH HOH . P 7 HOH B 37 2037 2037 HOH HOH . P 7 HOH B 38 2038 2038 HOH HOH . P 7 HOH B 39 2039 2039 HOH HOH . P 7 HOH B 40 2040 2040 HOH HOH . P 7 HOH B 41 2041 2041 HOH HOH . P 7 HOH B 42 2042 2042 HOH HOH . P 7 HOH B 43 2043 2043 HOH HOH . P 7 HOH B 44 2044 2044 HOH HOH . P 7 HOH B 45 2045 2045 HOH HOH . P 7 HOH B 46 2046 2046 HOH HOH . P 7 HOH B 47 2047 2047 HOH HOH . P 7 HOH B 48 2048 2048 HOH HOH . P 7 HOH B 49 2049 2049 HOH HOH . P 7 HOH B 50 2050 2050 HOH HOH . P 7 HOH B 51 2051 2051 HOH HOH . P 7 HOH B 52 2052 2052 HOH HOH . P 7 HOH B 53 2053 2053 HOH HOH . P 7 HOH B 54 2054 2054 HOH HOH . P 7 HOH B 55 2055 2055 HOH HOH . P 7 HOH B 56 2056 2056 HOH HOH . P 7 HOH B 57 2057 2057 HOH HOH . P 7 HOH B 58 2058 2058 HOH HOH . P 7 HOH B 59 2059 2059 HOH HOH . P 7 HOH B 60 2060 2060 HOH HOH . P 7 HOH B 61 2061 2061 HOH HOH . P 7 HOH B 62 2062 2062 HOH HOH . P 7 HOH B 63 2063 2063 HOH HOH . P 7 HOH B 64 2064 2064 HOH HOH . P 7 HOH B 65 2065 2065 HOH HOH . P 7 HOH B 66 2066 2066 HOH HOH . P 7 HOH B 67 2067 2067 HOH HOH . P 7 HOH B 68 2068 2068 HOH HOH . P 7 HOH B 69 2069 2069 HOH HOH . P 7 HOH B 70 2070 2070 HOH HOH . P 7 HOH B 71 2071 2071 HOH HOH . P 7 HOH B 72 2072 2072 HOH HOH . P 7 HOH B 73 2073 2073 HOH HOH . P 7 HOH B 74 2074 2074 HOH HOH . P 7 HOH B 75 2075 2075 HOH HOH . P 7 HOH B 76 2076 2076 HOH HOH . P 7 HOH B 77 2077 2077 HOH HOH . P 7 HOH B 78 2078 2078 HOH HOH . P 7 HOH B 79 2079 2079 HOH HOH . P 7 HOH B 80 2080 2080 HOH HOH . P 7 HOH B 81 2081 2081 HOH HOH . P 7 HOH B 82 2082 2082 HOH HOH . P 7 HOH B 83 2083 2083 HOH HOH . P 7 HOH B 84 2084 2084 HOH HOH . P 7 HOH B 85 2085 2085 HOH HOH . P 7 HOH B 86 2086 2086 HOH HOH . P 7 HOH B 87 2087 2087 HOH HOH . P 7 HOH B 88 2088 2088 HOH HOH . P 7 HOH B 89 2089 2089 HOH HOH . P 7 HOH B 90 2090 2090 HOH HOH . P 7 HOH B 91 2091 2091 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT FUM . . . D 3 -23.461 -22.015 -23.921 1 60.51 ? OXT FUM 1355 A 1 HETATM 2 C C FUM . . . D 3 -24.592 -21.793 -24.365 1 59.74 ? C FUM 1355 A 1 HETATM 3 O O FUM . . . D 3 -24.84 -21.448 -25.609 1 63.92 ? O FUM 1355 A 1 HETATM 4 C C4 FUM . . . D 3 -25.786 -21.884 -23.5 1 58.29 ? C4 FUM 1355 A 1 HETATM 5 C C5 FUM . . . D 3 -26.976 -21.638 -23.998 1 60.11 ? C5 FUM 1355 A 1 HETATM 6 C C6 FUM . . . D 3 -28.229 -21.677 -23.219 1 61.43 ? C6 FUM 1355 A 1 HETATM 7 O O7 FUM . . . D 3 -28.223 -21.929 -22.005 1 45.12 ? O7 FUM 1355 A 1 HETATM 8 O O8 FUM . . . D 3 -29.318 -21.388 -23.913 1 56.11 ? O8 FUM 1355 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #