data_5FYX
#
_model_server_result.job_id            ZLDoapI8lfaK2aniD-c-ng 
_model_server_result.datetime_utc      '2024-11-15 07:14:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fyx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1193}' 
#
_entry.id    5FYX 
#
_exptl.entry_id    5FYX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FYX 
_cell.length_a            54.057 
_cell.length_b            62.997 
_cell.length_c            63.425 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FYX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 288 n n 
C1 H11 MPD sing 289 n n 
C1 H12 MPD sing 290 n n 
C1 H13 MPD sing 291 n n 
C2 O2 MPD sing 292 n n 
C2 CM MPD sing 293 n n 
C2 C3 MPD sing 294 n n 
O2 HO2 MPD sing 295 n n 
CM HM1 MPD sing 296 n n 
CM HM2 MPD sing 297 n n 
CM HM3 MPD sing 298 n n 
C3 C4 MPD sing 299 n n 
C3 H31 MPD sing 300 n n 
C3 H32 MPD sing 301 n n 
C4 O4 MPD sing 302 n n 
C4 C5 MPD sing 303 n n 
C4 H4 MPD sing 304 n n 
O4 HO4 MPD sing 305 n n 
C5 H51 MPD sing 306 n n 
C5 H52 MPD sing 307 n n 
C5 H53 MPD sing 308 n n 
#
_atom_sites.entry_id                     5FYX 
_atom_sites.fract_transf_matrix[1][1]    0.018499 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 1186 1186 CA CA . 
C 2 CA A 1 1187 1187 CA CA . 
D 2 CA A 1 1188 1188 CA CA . 
E 3 MPD A 1 1189 1189 MPD MPD . 
F 3 MPD A 1 1190 1190 MPD MPD . 
G 3 MPD A 1 1191 1191 MPD MPD . 
H 3 MPD A 1 1192 1192 MPD MPD . 
I 3 MPD A 1 1193 1193 MPD MPD . 
J 3 MPD A 1 1194 1194 MPD MPD . 
K 4 FD6 A 1 1195 1195 FD6 FD6 . 
L 5 HOH A 1 2001 2001 HOH HOH . 
L 5 HOH A 2 2002 2002 HOH HOH . 
L 5 HOH A 3 2003 2003 HOH HOH . 
L 5 HOH A 4 2004 2004 HOH HOH . 
L 5 HOH A 5 2005 2005 HOH HOH . 
L 5 HOH A 6 2006 2006 HOH HOH . 
L 5 HOH A 7 2007 2007 HOH HOH . 
L 5 HOH A 8 2008 2008 HOH HOH . 
L 5 HOH A 9 2009 2009 HOH HOH . 
L 5 HOH A 10 2010 2010 HOH HOH . 
L 5 HOH A 11 2011 2011 HOH HOH . 
L 5 HOH A 12 2012 2012 HOH HOH . 
L 5 HOH A 13 2013 2013 HOH HOH . 
L 5 HOH A 14 2014 2014 HOH HOH . 
L 5 HOH A 15 2015 2015 HOH HOH . 
L 5 HOH A 16 2016 2016 HOH HOH . 
L 5 HOH A 17 2017 2017 HOH HOH . 
L 5 HOH A 18 2018 2018 HOH HOH . 
L 5 HOH A 19 2019 2019 HOH HOH . 
L 5 HOH A 20 2020 2020 HOH HOH . 
L 5 HOH A 21 2021 2021 HOH HOH . 
L 5 HOH A 22 2022 2022 HOH HOH . 
L 5 HOH A 23 2023 2023 HOH HOH . 
L 5 HOH A 24 2024 2024 HOH HOH . 
L 5 HOH A 25 2025 2025 HOH HOH . 
L 5 HOH A 26 2026 2026 HOH HOH . 
L 5 HOH A 27 2027 2027 HOH HOH . 
L 5 HOH A 28 2028 2028 HOH HOH . 
L 5 HOH A 29 2029 2029 HOH HOH . 
L 5 HOH A 30 2030 2030 HOH HOH . 
L 5 HOH A 31 2031 2031 HOH HOH . 
L 5 HOH A 32 2032 2032 HOH HOH . 
L 5 HOH A 33 2033 2033 HOH HOH . 
L 5 HOH A 34 2034 2034 HOH HOH . 
L 5 HOH A 35 2035 2035 HOH HOH . 
L 5 HOH A 36 2036 2036 HOH HOH . 
L 5 HOH A 37 2037 2037 HOH HOH . 
L 5 HOH A 38 2038 2038 HOH HOH . 
L 5 HOH A 39 2039 2039 HOH HOH . 
L 5 HOH A 40 2040 2040 HOH HOH . 
L 5 HOH A 41 2041 2041 HOH HOH . 
L 5 HOH A 42 2042 2042 HOH HOH . 
L 5 HOH A 43 2043 2043 HOH HOH . 
L 5 HOH A 44 2044 2044 HOH HOH . 
L 5 HOH A 45 2045 2045 HOH HOH . 
L 5 HOH A 46 2046 2046 HOH HOH . 
L 5 HOH A 47 2047 2047 HOH HOH . 
L 5 HOH A 48 2048 2048 HOH HOH . 
L 5 HOH A 49 2049 2049 HOH HOH . 
L 5 HOH A 50 2050 2050 HOH HOH . 
L 5 HOH A 51 2051 2051 HOH HOH . 
L 5 HOH A 52 2052 2052 HOH HOH . 
L 5 HOH A 53 2053 2053 HOH HOH . 
L 5 HOH A 54 2054 2054 HOH HOH . 
L 5 HOH A 55 2055 2055 HOH HOH . 
L 5 HOH A 56 2056 2056 HOH HOH . 
L 5 HOH A 57 2057 2057 HOH HOH . 
L 5 HOH A 58 2058 2058 HOH HOH . 
L 5 HOH A 59 2059 2059 HOH HOH . 
L 5 HOH A 60 2060 2060 HOH HOH . 
L 5 HOH A 61 2061 2061 HOH HOH . 
L 5 HOH A 62 2062 2062 HOH HOH . 
L 5 HOH A 63 2063 2063 HOH HOH . 
L 5 HOH A 64 2064 2064 HOH HOH . 
L 5 HOH A 65 2065 2065 HOH HOH . 
L 5 HOH A 66 2066 2066 HOH HOH . 
L 5 HOH A 67 2067 2067 HOH HOH . 
L 5 HOH A 68 2068 2068 HOH HOH . 
L 5 HOH A 69 2069 2069 HOH HOH . 
L 5 HOH A 70 2070 2070 HOH HOH . 
L 5 HOH A 71 2071 2071 HOH HOH . 
L 5 HOH A 72 2072 2072 HOH HOH . 
L 5 HOH A 73 2073 2073 HOH HOH . 
L 5 HOH A 74 2074 2074 HOH HOH . 
L 5 HOH A 75 2075 2075 HOH HOH . 
L 5 HOH A 76 2076 2076 HOH HOH . 
L 5 HOH A 77 2077 2077 HOH HOH . 
L 5 HOH A 78 2078 2078 HOH HOH . 
L 5 HOH A 79 2079 2079 HOH HOH . 
L 5 HOH A 80 2080 2080 HOH HOH . 
L 5 HOH A 81 2081 2081 HOH HOH . 
L 5 HOH A 82 2082 2082 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . I 3 18.522 -25.5 -30.093 1 60.76 ? C1 MPD 1193 A 1 
HETATM 2 C C2 MPD . . . I 3 19.288 -26.486 -29.217 1 75.39 ? C2 MPD 1193 A 1 
HETATM 3 O O2 MPD . . . I 3 19.749 -25.8 -28.025 1 72.83 ? O2 MPD 1193 A 1 
HETATM 4 C CM MPD . . . I 3 20.511 -27.022 -29.947 1 70 ? CM MPD 1193 A 1 
HETATM 5 C C3 MPD . . . I 3 18.402 -27.657 -28.803 1 68.42 ? C3 MPD 1193 A 1 
HETATM 6 C C4 MPD . . . I 3 17.002 -27.201 -28.417 1 61.47 ? C4 MPD 1193 A 1 
HETATM 7 O O4 MPD . . . I 3 16.099 -27.706 -29.374 1 71.83 ? O4 MPD 1193 A 1 
HETATM 8 C C5 MPD . . . I 3 16.604 -27.692 -27.03 1 65.36 ? C5 MPD 1193 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           479 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#