data_5G0F # _model_server_result.job_id 2phCqPNJhe5vqxCZfqUU3w _model_server_result.datetime_utc '2024-11-06 21:39:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2087}' # _entry.id 5G0F # _exptl.entry_id 5G0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G0F _cell.length_a 100.74 _cell.length_b 100.74 _cell.length_c 100.74 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 1 A GLY 972 3_556 G NI NI . A NI 2085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A SG CYS 8 A CYS 979 1_555 D ZN ZN . A ZN 2082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A ND1 HIS 10 A HIS 981 1_555 D ZN ZN . A ZN 2082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc4 A SG CYS 28 A CYS 999 1_555 F ZN ZN . A ZN 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 A SG CYS 31 A CYS 1002 1_555 F ZN ZN . A ZN 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc6 A SG CYS 40 A CYS 1011 1_555 E ZN ZN . A ZN 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 A SG CYS 43 A CYS 1014 1_555 E ZN ZN . A ZN 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc8 A SG CYS 48 A CYS 1019 1_555 F ZN ZN . A ZN 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc9 A ND1 HIS 55 A HIS 1026 1_555 F ZN ZN . A ZN 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc10 A NE2 HIS 59 A HIS 1030 1_555 E ZN ZN . A ZN 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc11 A ND1 HIS 65 A HIS 1036 1_555 E ZN ZN . A ZN 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc12 A SG CYS 78 A CYS 1049 1_555 D ZN ZN . A ZN 2082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc13 A SG CYS 81 A CYS 1052 1_555 D ZN ZN . A ZN 2082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc14 A NE2 HIS 86 A HIS 1057 1_555 H NI NI . A NI 2086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc15 A NE2 HIS 91 A HIS 1062 1_555 H NI NI . A NI 2086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc16 A NE2 HIS 98 A HIS 1069 1_555 G NI NI . A NI 2085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc17 G NI NI . A NI 2085 1_555 I O HOH . A HOH 3146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc18 G NI NI . A NI 2085 1_555 I O HOH . A HOH 3147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc19 G NI NI . A NI 2085 1_555 I O HOH . A HOH 3158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc20 H NI NI . A NI 2086 1_555 I O HOH . A HOH 3130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc21 H NI NI . A NI 2086 1_555 I O HOH . A HOH 3131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc22 H NI NI . A NI 2086 1_555 I O HOH . A HOH 3132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc23 H NI NI . A NI 2086 1_555 I O HOH . A HOH 3138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 120 n n N H GLY sing 121 n n N H2 GLY sing 122 n n CA C GLY sing 123 n n CA HA2 GLY sing 124 n n CA HA3 GLY sing 125 n n C O GLY doub 126 n n C OXT GLY sing 127 n n OXT HXT GLY sing 128 n n # _atom_sites.entry_id 5G0F _atom_sites.fract_transf_matrix[1][1] 0.009927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 2087 2087 GLY GLY . C 2 GLY A 1 2088 2088 GLY GLY . D 3 ZN A 1 2082 2082 ZN ZN . E 3 ZN A 1 2083 2083 ZN ZN . F 3 ZN A 1 2084 2084 ZN ZN . G 4 NI A 1 2085 2085 NI NI . H 4 NI A 1 2086 2086 NI NI . I 5 HOH A 1 3001 3001 HOH HOH . I 5 HOH A 2 3002 3002 HOH HOH . I 5 HOH A 3 3003 3003 HOH HOH . I 5 HOH A 4 3004 3004 HOH HOH . I 5 HOH A 5 3005 3005 HOH HOH . I 5 HOH A 6 3006 3006 HOH HOH . I 5 HOH A 7 3007 3007 HOH HOH . I 5 HOH A 8 3008 3008 HOH HOH . I 5 HOH A 9 3009 3009 HOH HOH . I 5 HOH A 10 3010 3010 HOH HOH . I 5 HOH A 11 3011 3011 HOH HOH . I 5 HOH A 12 3012 3012 HOH HOH . I 5 HOH A 13 3013 3013 HOH HOH . I 5 HOH A 14 3014 3014 HOH HOH . I 5 HOH A 15 3015 3015 HOH HOH . I 5 HOH A 16 3016 3016 HOH HOH . I 5 HOH A 17 3017 3017 HOH HOH . I 5 HOH A 18 3018 3018 HOH HOH . I 5 HOH A 19 3019 3019 HOH HOH . I 5 HOH A 20 3020 3020 HOH HOH . I 5 HOH A 21 3021 3021 HOH HOH . I 5 HOH A 22 3022 3022 HOH HOH . I 5 HOH A 23 3023 3023 HOH HOH . I 5 HOH A 24 3024 3024 HOH HOH . I 5 HOH A 25 3025 3025 HOH HOH . I 5 HOH A 26 3026 3026 HOH HOH . I 5 HOH A 27 3027 3027 HOH HOH . I 5 HOH A 28 3028 3028 HOH HOH . I 5 HOH A 29 3029 3029 HOH HOH . I 5 HOH A 30 3030 3030 HOH HOH . I 5 HOH A 31 3031 3031 HOH HOH . I 5 HOH A 32 3032 3032 HOH HOH . I 5 HOH A 33 3033 3033 HOH HOH . I 5 HOH A 34 3034 3034 HOH HOH . I 5 HOH A 35 3035 3035 HOH HOH . I 5 HOH A 36 3036 3036 HOH HOH . I 5 HOH A 37 3037 3037 HOH HOH . I 5 HOH A 38 3038 3038 HOH HOH . I 5 HOH A 39 3039 3039 HOH HOH . I 5 HOH A 40 3040 3040 HOH HOH . I 5 HOH A 41 3041 3041 HOH HOH . I 5 HOH A 42 3042 3042 HOH HOH . I 5 HOH A 43 3043 3043 HOH HOH . I 5 HOH A 44 3044 3044 HOH HOH . I 5 HOH A 45 3045 3045 HOH HOH . I 5 HOH A 46 3046 3046 HOH HOH . I 5 HOH A 47 3047 3047 HOH HOH . I 5 HOH A 48 3048 3048 HOH HOH . I 5 HOH A 49 3049 3049 HOH HOH . I 5 HOH A 50 3050 3050 HOH HOH . I 5 HOH A 51 3051 3051 HOH HOH . I 5 HOH A 52 3052 3052 HOH HOH . I 5 HOH A 53 3053 3053 HOH HOH . I 5 HOH A 54 3054 3054 HOH HOH . I 5 HOH A 55 3055 3055 HOH HOH . I 5 HOH A 56 3056 3056 HOH HOH . I 5 HOH A 57 3057 3057 HOH HOH . I 5 HOH A 58 3058 3058 HOH HOH . I 5 HOH A 59 3059 3059 HOH HOH . I 5 HOH A 60 3060 3060 HOH HOH . I 5 HOH A 61 3061 3061 HOH HOH . I 5 HOH A 62 3062 3062 HOH HOH . I 5 HOH A 63 3063 3063 HOH HOH . I 5 HOH A 64 3064 3064 HOH HOH . I 5 HOH A 65 3065 3065 HOH HOH . I 5 HOH A 66 3066 3066 HOH HOH . I 5 HOH A 67 3067 3067 HOH HOH . I 5 HOH A 68 3068 3068 HOH HOH . I 5 HOH A 69 3069 3069 HOH HOH . I 5 HOH A 70 3070 3070 HOH HOH . I 5 HOH A 71 3071 3071 HOH HOH . I 5 HOH A 72 3072 3072 HOH HOH . I 5 HOH A 73 3073 3073 HOH HOH . I 5 HOH A 74 3074 3074 HOH HOH . I 5 HOH A 75 3075 3075 HOH HOH . I 5 HOH A 76 3076 3076 HOH HOH . I 5 HOH A 77 3077 3077 HOH HOH . I 5 HOH A 78 3078 3078 HOH HOH . I 5 HOH A 79 3079 3079 HOH HOH . I 5 HOH A 80 3080 3080 HOH HOH . I 5 HOH A 81 3081 3081 HOH HOH . I 5 HOH A 82 3082 3082 HOH HOH . I 5 HOH A 83 3083 3083 HOH HOH . I 5 HOH A 84 3084 3084 HOH HOH . I 5 HOH A 85 3085 3085 HOH HOH . I 5 HOH A 86 3086 3086 HOH HOH . I 5 HOH A 87 3087 3087 HOH HOH . I 5 HOH A 88 3088 3088 HOH HOH . I 5 HOH A 89 3089 3089 HOH HOH . I 5 HOH A 90 3090 3090 HOH HOH . I 5 HOH A 91 3091 3091 HOH HOH . I 5 HOH A 92 3092 3092 HOH HOH . I 5 HOH A 93 3093 3093 HOH HOH . I 5 HOH A 94 3094 3094 HOH HOH . I 5 HOH A 95 3095 3095 HOH HOH . I 5 HOH A 96 3096 3096 HOH HOH . I 5 HOH A 97 3097 3097 HOH HOH . I 5 HOH A 98 3098 3098 HOH HOH . I 5 HOH A 99 3099 3099 HOH HOH . I 5 HOH A 100 3100 3100 HOH HOH . I 5 HOH A 101 3101 3101 HOH HOH . I 5 HOH A 102 3102 3102 HOH HOH . I 5 HOH A 103 3103 3103 HOH HOH . I 5 HOH A 104 3104 3104 HOH HOH . I 5 HOH A 105 3105 3105 HOH HOH . I 5 HOH A 106 3106 3106 HOH HOH . I 5 HOH A 107 3107 3107 HOH HOH . I 5 HOH A 108 3108 3108 HOH HOH . I 5 HOH A 109 3109 3109 HOH HOH . I 5 HOH A 110 3110 3110 HOH HOH . I 5 HOH A 111 3111 3111 HOH HOH . I 5 HOH A 112 3112 3112 HOH HOH . I 5 HOH A 113 3113 3113 HOH HOH . I 5 HOH A 114 3114 3114 HOH HOH . I 5 HOH A 115 3115 3115 HOH HOH . I 5 HOH A 116 3116 3116 HOH HOH . I 5 HOH A 117 3117 3117 HOH HOH . I 5 HOH A 118 3118 3118 HOH HOH . I 5 HOH A 119 3119 3119 HOH HOH . I 5 HOH A 120 3120 3120 HOH HOH . I 5 HOH A 121 3121 3121 HOH HOH . I 5 HOH A 122 3122 3122 HOH HOH . I 5 HOH A 123 3123 3123 HOH HOH . I 5 HOH A 124 3124 3124 HOH HOH . I 5 HOH A 125 3125 3125 HOH HOH . I 5 HOH A 126 3126 3126 HOH HOH . I 5 HOH A 127 3127 3127 HOH HOH . I 5 HOH A 128 3128 3128 HOH HOH . I 5 HOH A 129 3129 3129 HOH HOH . I 5 HOH A 130 3130 3130 HOH HOH . I 5 HOH A 131 3131 3131 HOH HOH . I 5 HOH A 132 3132 3132 HOH HOH . I 5 HOH A 133 3133 3133 HOH HOH . I 5 HOH A 134 3134 3134 HOH HOH . I 5 HOH A 135 3135 3135 HOH HOH . I 5 HOH A 136 3136 3136 HOH HOH . I 5 HOH A 137 3137 3137 HOH HOH . I 5 HOH A 138 3138 3138 HOH HOH . I 5 HOH A 139 3139 3139 HOH HOH . I 5 HOH A 140 3140 3140 HOH HOH . I 5 HOH A 141 3141 3141 HOH HOH . I 5 HOH A 142 3142 3142 HOH HOH . I 5 HOH A 143 3143 3143 HOH HOH . I 5 HOH A 144 3144 3144 HOH HOH . I 5 HOH A 145 3145 3145 HOH HOH . I 5 HOH A 146 3146 3146 HOH HOH . I 5 HOH A 147 3147 3147 HOH HOH . I 5 HOH A 148 3148 3148 HOH HOH . I 5 HOH A 149 3149 3149 HOH HOH . I 5 HOH A 150 3150 3150 HOH HOH . I 5 HOH A 151 3151 3151 HOH HOH . I 5 HOH A 152 3152 3152 HOH HOH . I 5 HOH A 153 3153 3153 HOH HOH . I 5 HOH A 154 3154 3154 HOH HOH . I 5 HOH A 155 3155 3155 HOH HOH . I 5 HOH A 156 3156 3156 HOH HOH . I 5 HOH A 157 3157 3157 HOH HOH . I 5 HOH A 158 3158 3158 HOH HOH . I 5 HOH A 159 3159 3159 HOH HOH . I 5 HOH A 160 3160 3160 HOH HOH . I 5 HOH A 161 3161 3161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . B 2 -11.551 -25.716 46.109 1 45.58 ? N GLY 2087 A 1 HETATM 2 C CA GLY . . . B 2 -10.325 -25.511 45.343 1 44.76 ? CA GLY 2087 A 1 HETATM 3 C C GLY . . . B 2 -10.46 -24.556 44.168 1 45.98 ? C GLY 2087 A 1 HETATM 4 O O GLY . . . B 2 -11.545 -24.022 43.916 1 44.86 ? O GLY 2087 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #