data_5G1F
#
_model_server_result.job_id            PiGd3HmTa8r9qzmMdbhl-A 
_model_server_result.datetime_utc      '2024-11-15 10:24:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5g1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5G1F 
#
_exptl.entry_id    5G1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.168 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PIMELIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5G1F 
_cell.length_a            50.59 
_cell.length_b            78.36 
_cell.length_c            166.43 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5G1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C7 H12 O4' 
_chem_comp.formula_weight    160.168 
_chem_comp.id                PML 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PIMELIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O11 PML doub 411 n n 
C1 O12 PML sing 412 n n 
C1 C2 PML sing 413 n n 
O12 H12 PML sing 414 n n 
C2 C3 PML sing 415 n n 
C2 HC21 PML sing 416 n n 
C2 HC22 PML sing 417 n n 
C3 C4 PML sing 418 n n 
C3 HC31 PML sing 419 n n 
C3 HC32 PML sing 420 n n 
C4 C5 PML sing 421 n n 
C4 HC41 PML sing 422 n n 
C4 HC42 PML sing 423 n n 
C5 C6 PML sing 424 n n 
C5 HC51 PML sing 425 n n 
C5 HC52 PML sing 426 n n 
C6 C7 PML sing 427 n n 
C6 HC61 PML sing 428 n n 
C6 HC62 PML sing 429 n n 
C7 O71 PML doub 430 n n 
C7 O72 PML sing 431 n n 
O72 H72 PML sing 432 n n 
#
_atom_sites.entry_id                     5G1F 
_atom_sites.fract_transf_matrix[1][1]    0.019767 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006009 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PML A 1 301 1257 PML PML . 
D 3 2PE A 1 302 1258 2PE 2PE . 
E 4 COA B 1 301 1259 COA COA . 
F 2 PML B 1 302 1260 PML PML . 
G 5 HOH A 1 401 2002 HOH HOH . 
G 5 HOH A 2 402 2005 HOH HOH . 
G 5 HOH A 3 403 2004 HOH HOH . 
G 5 HOH A 4 404 2001 HOH HOH . 
G 5 HOH A 5 405 2003 HOH HOH . 
G 5 HOH A 6 406 2006 HOH HOH . 
H 5 HOH B 1 2001 2001 HOH HOH . 
H 5 HOH B 2 2002 2010 HOH HOH . 
H 5 HOH B 3 2003 2012 HOH HOH . 
H 5 HOH B 4 2004 2011 HOH HOH . 
H 5 HOH B 5 2005 2015 HOH HOH . 
H 5 HOH B 6 2006 2007 HOH HOH . 
H 5 HOH B 7 2007 2004 HOH HOH . 
H 5 HOH B 8 2008 2002 HOH HOH . 
H 5 HOH B 9 2009 2005 HOH HOH . 
H 5 HOH B 10 2010 2003 HOH HOH . 
H 5 HOH B 11 2011 2013 HOH HOH . 
H 5 HOH B 12 2012 2009 HOH HOH . 
H 5 HOH B 13 2013 2006 HOH HOH . 
H 5 HOH B 14 2014 2008 HOH HOH . 
H 5 HOH B 15 2015 2014 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PML . . . C 2 24.971 7.327 198.701 1 60.65 ? C1 PML 301 A 1 
HETATM 2 O O11 PML . . . C 2 25.384 8.494 198.825 1 69.67 ? O11 PML 301 A 1 
HETATM 3 O O12 PML . . . C 2 25.494 6.383 199.331 1 61.58 ? O12 PML 301 A 1 
HETATM 4 C C2 PML . . . C 2 23.81 7.056 197.766 1 66.64 ? C2 PML 301 A 1 
HETATM 5 C C3 PML . . . C 2 22.47 7.344 198.451 1 61.8 ? C3 PML 301 A 1 
HETATM 6 C C4 PML . . . C 2 21.352 7.537 197.433 1 66.33 ? C4 PML 301 A 1 
HETATM 7 C C5 PML . . . C 2 20.305 6.441 197.473 1 73.49 ? C5 PML 301 A 1 
HETATM 8 C C6 PML . . . C 2 19.406 6.475 196.232 1 74.69 ? C6 PML 301 A 1 
HETATM 9 C C7 PML . . . C 2 19.086 5.071 195.755 1 83.85 ? C7 PML 301 A 1 
HETATM 10 O O71 PML . . . C 2 19.987 4.361 195.236 1 75.12 ? O71 PML 301 A 1 
HETATM 11 O O72 PML . . . C 2 17.909 4.669 195.881 1 107.17 ? O72 PML 301 A 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           984 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           11 
#