data_5G1F # _model_server_result.job_id FIa_-dwoQNe7lanqgUDR3w _model_server_result.datetime_utc '2024-11-15 10:55:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5G1F # _exptl.entry_id 5G1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G1F _cell.length_a 50.59 _cell.length_b 78.36 _cell.length_c 166.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 135 n y N1A C6A COA doub 136 n y C2A N3A COA doub 137 n y C2A H2A COA sing 138 n n N3A C4A COA sing 139 n y C4A C5A COA doub 140 n y C4A N9A COA sing 141 n y C5A C6A COA sing 142 n y C5A N7A COA sing 143 n y C6A N6A COA sing 144 n n N6A H61A COA sing 145 n n N6A H62A COA sing 146 n n N7A C8A COA doub 147 n y C8A N9A COA sing 148 n y C8A H8A COA sing 149 n n N9A C1B COA sing 150 n n C1B C2B COA sing 151 n n C1B O4B COA sing 152 n n C1B H1B COA sing 153 n n C2B O2B COA sing 154 n n C2B C3B COA sing 155 n n C2B H2B COA sing 156 n n O2B HO2A COA sing 157 n n C3B O3B COA sing 158 n n C3B C4B COA sing 159 n n C3B H3B COA sing 160 n n O3B P3B COA sing 161 n n P3B O7A COA doub 162 n n P3B O8A COA sing 163 n n P3B O9A COA sing 164 n n O8A HOA8 COA sing 165 n n O9A HOA9 COA sing 166 n n C4B O4B COA sing 167 n n C4B C5B COA sing 168 n n C4B H4B COA sing 169 n n C5B O5B COA sing 170 n n C5B H51A COA sing 171 n n C5B H52A COA sing 172 n n O5B P1A COA sing 173 n n P1A O1A COA doub 174 n n P1A O2A COA sing 175 n n P1A O3A COA sing 176 n n O2A HOA2 COA sing 177 n n O3A P2A COA sing 178 n n P2A O4A COA doub 179 n n P2A O5A COA sing 180 n n P2A O6A COA sing 181 n n O5A HOA5 COA sing 182 n n O6A CCP COA sing 183 n n CBP CCP COA sing 184 n n CBP CDP COA sing 185 n n CBP CEP COA sing 186 n n CBP CAP COA sing 187 n n CCP H121 COA sing 188 n n CCP H122 COA sing 189 n n CDP H131 COA sing 190 n n CDP H132 COA sing 191 n n CDP H133 COA sing 192 n n CEP H141 COA sing 193 n n CEP H142 COA sing 194 n n CEP H143 COA sing 195 n n CAP OAP COA sing 196 n n CAP C9P COA sing 197 n n CAP H10 COA sing 198 n n OAP HO1 COA sing 199 n n C9P O9P COA doub 200 n n C9P N8P COA sing 201 n n N8P C7P COA sing 202 n n N8P HN8 COA sing 203 n n C7P C6P COA sing 204 n n C7P H71 COA sing 205 n n C7P H72 COA sing 206 n n C6P C5P COA sing 207 n n C6P H61 COA sing 208 n n C6P H62 COA sing 209 n n C5P O5P COA doub 210 n n C5P N4P COA sing 211 n n N4P C3P COA sing 212 n n N4P HN4 COA sing 213 n n C3P C2P COA sing 214 n n C3P H31 COA sing 215 n n C3P H32 COA sing 216 n n C2P S1P COA sing 217 n n C2P H21 COA sing 218 n n C2P H22 COA sing 219 n n S1P HS1 COA sing 220 n n # _atom_sites.entry_id 5G1F _atom_sites.fract_transf_matrix[1][1] 0.019767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PML A 1 301 1257 PML PML . D 3 2PE A 1 302 1258 2PE 2PE . E 4 COA B 1 301 1259 COA COA . F 2 PML B 1 302 1260 PML PML . G 5 HOH A 1 401 2002 HOH HOH . G 5 HOH A 2 402 2005 HOH HOH . G 5 HOH A 3 403 2004 HOH HOH . G 5 HOH A 4 404 2001 HOH HOH . G 5 HOH A 5 405 2003 HOH HOH . G 5 HOH A 6 406 2006 HOH HOH . H 5 HOH B 1 2001 2001 HOH HOH . H 5 HOH B 2 2002 2010 HOH HOH . H 5 HOH B 3 2003 2012 HOH HOH . H 5 HOH B 4 2004 2011 HOH HOH . H 5 HOH B 5 2005 2015 HOH HOH . H 5 HOH B 6 2006 2007 HOH HOH . H 5 HOH B 7 2007 2004 HOH HOH . H 5 HOH B 8 2008 2002 HOH HOH . H 5 HOH B 9 2009 2005 HOH HOH . H 5 HOH B 10 2010 2003 HOH HOH . H 5 HOH B 11 2011 2013 HOH HOH . H 5 HOH B 12 2012 2009 HOH HOH . H 5 HOH B 13 2013 2006 HOH HOH . H 5 HOH B 14 2014 2008 HOH HOH . H 5 HOH B 15 2015 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 4 10.733 12.605 170.064 1 80.8 ? N1A COA 301 B 1 HETATM 2 C C2A COA . . . E 4 10.263 12.098 168.9 1 65.06 ? C2A COA 301 B 1 HETATM 3 N N3A COA . . . E 4 9.226 11.234 168.871 1 74.81 ? N3A COA 301 B 1 HETATM 4 C C4A COA . . . E 4 8.599 10.849 170.025 1 79.68 ? C4A COA 301 B 1 HETATM 5 C C5A COA . . . E 4 9.064 11.354 171.323 1 77.67 ? C5A COA 301 B 1 HETATM 6 C C6A COA . . . E 4 10.209 12.273 171.28 1 72.39 ? C6A COA 301 B 1 HETATM 7 N N6A COA . . . E 4 10.684 12.763 172.441 1 85.76 ? N6A COA 301 B 1 HETATM 8 N N7A COA . . . E 4 8.314 10.787 172.286 1 80.29 ? N7A COA 301 B 1 HETATM 9 C C8A COA . . . E 4 7.41 9.991 171.669 1 73.36 ? C8A COA 301 B 1 HETATM 10 N N9A COA . . . E 4 7.591 10.029 170.321 1 94.73 ? N9A COA 301 B 1 HETATM 11 C C1B COA . . . E 4 6.819 9.303 169.275 1 96.8 ? C1B COA 301 B 1 HETATM 12 C C2B COA . . . E 4 6.181 8.023 169.809 1 92.79 ? C2B COA 301 B 1 HETATM 13 O O2B COA . . . E 4 7.035 6.873 169.643 1 78.16 ? O2B COA 301 B 1 HETATM 14 C C3B COA . . . E 4 4.874 7.966 169.029 1 99.29 ? C3B COA 301 B 1 HETATM 15 O O3B COA . . . E 4 5.049 7.262 167.807 1 94.05 ? O3B COA 301 B 1 HETATM 16 P P3B COA . . . E 4 3.95 6.262 167.202 1 73.83 ? P3B COA 301 B 1 HETATM 17 O O7A COA . . . E 4 4.373 6.052 165.768 1 73.93 ? O7A COA 301 B 1 HETATM 18 O O8A COA . . . E 4 2.664 7.058 167.368 1 75.59 ? O8A COA 301 B 1 HETATM 19 O O9A COA . . . E 4 4.141 5.026 168.06 1 69.36 ? O9A COA 301 B 1 HETATM 20 C C4B COA . . . E 4 4.539 9.412 168.673 1 104.43 ? C4B COA 301 B 1 HETATM 21 O O4B COA . . . E 4 5.765 10.146 168.78 1 96.34 ? O4B COA 301 B 1 HETATM 22 C C5B COA . . . E 4 3.445 10.002 169.564 1 98.77 ? C5B COA 301 B 1 HETATM 23 O O5B COA . . . E 4 3.78 9.835 170.94 1 113.17 ? O5B COA 301 B 1 HETATM 24 P P1A COA . . . E 4 2.645 9.801 172.085 1 138.59 ? P1A COA 301 B 1 HETATM 25 O O1A COA . . . E 4 1.368 10.369 171.503 1 128.98 ? O1A COA 301 B 1 HETATM 26 O O2A COA . . . E 4 3.226 10.41 173.342 1 147.58 ? O2A COA 301 B 1 HETATM 27 O O3A COA . . . E 4 2.433 8.214 172.306 1 134.48 ? O3A COA 301 B 1 HETATM 28 P P2A COA . . . E 4 2.887 7.443 173.65 1 130.99 ? P2A COA 301 B 1 HETATM 29 O O4A COA . . . E 4 2.744 5.882 173.26 1 124.49 ? O4A COA 301 B 1 HETATM 30 O O5A COA . . . E 4 4.352 7.74 173.894 1 112.57 ? O5A COA 301 B 1 HETATM 31 O O6A COA . . . E 4 1.85 7.732 174.714 1 136.23 ? O6A COA 301 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #