data_5G1F
#
_model_server_result.job_id            b43huQta9I1SrgnpdFRjvQ 
_model_server_result.datetime_utc      '2024-11-15 10:32:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5g1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5G1F 
#
_exptl.entry_id    5G1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              414.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NONAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5G1F 
_cell.length_a            50.59 
_cell.length_b            78.36 
_cell.length_c            166.43 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5G1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H38 O10' 
_chem_comp.formula_weight    414.488 
_chem_comp.id                2PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NONAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 2PE sing 1 n n 
O1 HO1 2PE sing 2 n n 
C2 C3 2PE sing 3 n n 
C2 H21 2PE sing 4 n n 
C2 H22 2PE sing 5 n n 
C3 O4 2PE sing 6 n n 
C3 H31 2PE sing 7 n n 
C3 H32 2PE sing 8 n n 
O4 C5 2PE sing 9 n n 
C5 C6 2PE sing 10 n n 
C5 H51 2PE sing 11 n n 
C5 H52 2PE sing 12 n n 
C6 O7 2PE sing 13 n n 
C6 H61 2PE sing 14 n n 
C6 H62 2PE sing 15 n n 
O7 C8 2PE sing 16 n n 
C8 C9 2PE sing 17 n n 
C8 H81 2PE sing 18 n n 
C8 H82 2PE sing 19 n n 
C9 O10 2PE sing 20 n n 
C9 H91 2PE sing 21 n n 
C9 H92 2PE sing 22 n n 
O10 C11 2PE sing 23 n n 
C11 C12 2PE sing 24 n n 
C11 H111 2PE sing 25 n n 
C11 H112 2PE sing 26 n n 
C12 O13 2PE sing 27 n n 
C12 H121 2PE sing 28 n n 
C12 H122 2PE sing 29 n n 
O13 C14 2PE sing 30 n n 
C14 C15 2PE sing 31 n n 
C14 H141 2PE sing 32 n n 
C14 H142 2PE sing 33 n n 
C15 O16 2PE sing 34 n n 
C15 H151 2PE sing 35 n n 
C15 H152 2PE sing 36 n n 
O16 C17 2PE sing 37 n n 
C17 C18 2PE sing 38 n n 
C17 H171 2PE sing 39 n n 
C17 H172 2PE sing 40 n n 
C18 O19 2PE sing 41 n n 
C18 H181 2PE sing 42 n n 
C18 H182 2PE sing 43 n n 
O19 C20 2PE sing 44 n n 
C20 C21 2PE sing 45 n n 
C20 H201 2PE sing 46 n n 
C20 H202 2PE sing 47 n n 
C21 O22 2PE sing 48 n n 
C21 H211 2PE sing 49 n n 
C21 H212 2PE sing 50 n n 
O22 C23 2PE sing 51 n n 
C23 C24 2PE sing 52 n n 
C23 H231 2PE sing 53 n n 
C23 H232 2PE sing 54 n n 
C24 O25 2PE sing 55 n n 
C24 H241 2PE sing 56 n n 
C24 H242 2PE sing 57 n n 
O25 C26 2PE sing 58 n n 
C26 C27 2PE sing 59 n n 
C26 H261 2PE sing 60 n n 
C26 H262 2PE sing 61 n n 
C27 O28 2PE sing 62 n n 
C27 H271 2PE sing 63 n n 
C27 H272 2PE sing 64 n n 
O28 HO2 2PE sing 65 n n 
#
_atom_sites.entry_id                     5G1F 
_atom_sites.fract_transf_matrix[1][1]    0.019767 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006009 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PML A 1 301 1257 PML PML . 
D 3 2PE A 1 302 1258 2PE 2PE . 
E 4 COA B 1 301 1259 COA COA . 
F 2 PML B 1 302 1260 PML PML . 
G 5 HOH A 1 401 2002 HOH HOH . 
G 5 HOH A 2 402 2005 HOH HOH . 
G 5 HOH A 3 403 2004 HOH HOH . 
G 5 HOH A 4 404 2001 HOH HOH . 
G 5 HOH A 5 405 2003 HOH HOH . 
G 5 HOH A 6 406 2006 HOH HOH . 
H 5 HOH B 1 2001 2001 HOH HOH . 
H 5 HOH B 2 2002 2010 HOH HOH . 
H 5 HOH B 3 2003 2012 HOH HOH . 
H 5 HOH B 4 2004 2011 HOH HOH . 
H 5 HOH B 5 2005 2015 HOH HOH . 
H 5 HOH B 6 2006 2007 HOH HOH . 
H 5 HOH B 7 2007 2004 HOH HOH . 
H 5 HOH B 8 2008 2002 HOH HOH . 
H 5 HOH B 9 2009 2005 HOH HOH . 
H 5 HOH B 10 2010 2003 HOH HOH . 
H 5 HOH B 11 2011 2013 HOH HOH . 
H 5 HOH B 12 2012 2009 HOH HOH . 
H 5 HOH B 13 2013 2006 HOH HOH . 
H 5 HOH B 14 2014 2008 HOH HOH . 
H 5 HOH B 15 2015 2014 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 2PE . . . D 3 9.672 8.535 196.686 1 81.49 ? O4 2PE 302 A 1 
HETATM 2 C C5 2PE . . . D 3 10.539 7.57 196.055 1 90.2 ? C5 2PE 302 A 1 
HETATM 3 C C6 2PE . . . D 3 11.749 8.249 195.406 1 88.5 ? C6 2PE 302 A 1 
HETATM 4 O O7 2PE . . . D 3 12.918 7.452 195.632 1 95.35 ? O7 2PE 302 A 1 
HETATM 5 C C8 2PE . . . D 3 14.127 8.225 195.603 1 88.84 ? C8 2PE 302 A 1 
HETATM 6 C C9 2PE . . . D 3 15.37 7.347 195.725 1 85.77 ? C9 2PE 302 A 1 
HETATM 7 O O10 2PE . . . D 3 15.478 6.462 194.613 1 87.83 ? O10 2PE 302 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           403 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#