data_5G27 # _model_server_result.job_id Igl7N1jHh8z3e5gonkdpmg _model_server_result.datetime_utc '2024-11-15 08:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5G27 # _exptl.entry_id 5G27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5G27 _cell.length_a 60.934 _cell.length_b 60.934 _cell.length_c 97.002 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 118 A CYS 118 1_555 B S1 MTN . A MTN 501 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? covale ? covale2 A SG CYS 118 A CYS 118 1_555 B S1 MTN . A MTN 501 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.946 ? metalc ? metalc1 A O GLU 11 A GLU 11 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc2 A OE1 GLU 11 A GLU 11 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc3 A OH TYR 18 A TYR 18 1_555 E NA NA . A NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc4 E NA NA . A NA 504 1_555 F O HOH . A HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc5 E NA NA . A NA 504 1_555 F O HOH . A HOH 2021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc6 E NA NA . A NA 504 1_555 F O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 254 n n N1 C1 MTN sing 255 n n N1 C5 MTN sing 256 n n C1 C2 MTN sing 257 n n C1 C8 MTN sing 258 n n C1 C9 MTN sing 259 n n C2 C3 MTN doub 260 n n C2 H2 MTN sing 261 n n C3 C4 MTN sing 262 n n C3 C5 MTN sing 263 n n C4 S1 MTN sing 264 n n C4 H41 MTN sing 265 n n C4 H42 MTN sing 266 n n C5 C6 MTN sing 267 n n C5 C7 MTN sing 268 n n C6 H61 MTN sing 269 n n C6 H62 MTN sing 270 n n C6 H63 MTN sing 271 n n C7 H71 MTN sing 272 n n C7 H72 MTN sing 273 n n C7 H73 MTN sing 274 n n C8 H81 MTN sing 275 n n C8 H82 MTN sing 276 n n C8 H83 MTN sing 277 n n C9 H91 MTN sing 278 n n C9 H92 MTN sing 279 n n C9 H93 MTN sing 280 n n S1 S2 MTN sing 281 n n S2 O2 MTN doub 282 n n S2 O3 MTN doub 283 n n S2 C12 MTN sing 284 n n C12 H4 MTN sing 285 n n C12 H1 MTN sing 286 n n C12 H3 MTN sing 287 n n # _atom_sites.entry_id 5G27 _atom_sites.fract_transf_matrix[1][1] 0.016411 _atom_sites.fract_transf_matrix[1][2] 0.009475 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 501 501 MTN MTN . C 3 HED A 1 502 502 HED HED . D 4 CL A 1 503 503 CL CL . E 5 NA A 1 504 504 NA NA . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . F 6 HOH A 59 2059 2059 HOH HOH . F 6 HOH A 60 2060 2060 HOH HOH . F 6 HOH A 61 2061 2061 HOH HOH . F 6 HOH A 62 2062 2062 HOH HOH . F 6 HOH A 63 2063 2063 HOH HOH . F 6 HOH A 64 2064 2064 HOH HOH . F 6 HOH A 65 2065 2065 HOH HOH . F 6 HOH A 66 2066 2066 HOH HOH . F 6 HOH A 67 2067 2067 HOH HOH . F 6 HOH A 68 2068 2068 HOH HOH . F 6 HOH A 69 2069 2069 HOH HOH . F 6 HOH A 70 2070 2070 HOH HOH . F 6 HOH A 71 2071 2071 HOH HOH . F 6 HOH A 72 2072 2072 HOH HOH . F 6 HOH A 73 2073 2073 HOH HOH . F 6 HOH A 74 2074 2074 HOH HOH . F 6 HOH A 75 2075 2075 HOH HOH . F 6 HOH A 76 2076 2076 HOH HOH . F 6 HOH A 77 2077 2077 HOH HOH . F 6 HOH A 78 2078 2078 HOH HOH . F 6 HOH A 79 2079 2079 HOH HOH . F 6 HOH A 80 2080 2080 HOH HOH . F 6 HOH A 81 2081 2081 HOH HOH . F 6 HOH A 82 2082 2082 HOH HOH . F 6 HOH A 83 2083 2083 HOH HOH . F 6 HOH A 84 2084 2084 HOH HOH . F 6 HOH A 85 2085 2085 HOH HOH . F 6 HOH A 86 2086 2086 HOH HOH . F 6 HOH A 87 2087 2087 HOH HOH . F 6 HOH A 88 2088 2088 HOH HOH . F 6 HOH A 89 2089 2089 HOH HOH . F 6 HOH A 90 2090 2090 HOH HOH . F 6 HOH A 91 2091 2091 HOH HOH . F 6 HOH A 92 2092 2092 HOH HOH . F 6 HOH A 93 2093 2093 HOH HOH . F 6 HOH A 94 2094 2094 HOH HOH . F 6 HOH A 95 2095 2095 HOH HOH . F 6 HOH A 96 2096 2096 HOH HOH . F 6 HOH A 97 2097 2097 HOH HOH . F 6 HOH A 98 2098 2098 HOH HOH . F 6 HOH A 99 2099 2099 HOH HOH . F 6 HOH A 100 2100 2100 HOH HOH . F 6 HOH A 101 2101 2101 HOH HOH . F 6 HOH A 102 2102 2102 HOH HOH . F 6 HOH A 103 2103 2103 HOH HOH . F 6 HOH A 104 2104 2104 HOH HOH . F 6 HOH A 105 2105 2105 HOH HOH . F 6 HOH A 106 2106 2106 HOH HOH . F 6 HOH A 107 2107 2107 HOH HOH . F 6 HOH A 108 2108 2108 HOH HOH . F 6 HOH A 109 2109 2109 HOH HOH . F 6 HOH A 110 2110 2110 HOH HOH . F 6 HOH A 111 2111 2111 HOH HOH . F 6 HOH A 112 2112 2112 HOH HOH . F 6 HOH A 113 2113 2113 HOH HOH . F 6 HOH A 114 2114 2114 HOH HOH . F 6 HOH A 115 2115 2115 HOH HOH . F 6 HOH A 116 2116 2116 HOH HOH . F 6 HOH A 117 2117 2117 HOH HOH . F 6 HOH A 118 2118 2118 HOH HOH . F 6 HOH A 119 2119 2119 HOH HOH . F 6 HOH A 120 2120 2120 HOH HOH . F 6 HOH A 121 2121 2121 HOH HOH . F 6 HOH A 122 2122 2122 HOH HOH . F 6 HOH A 123 2123 2123 HOH HOH . F 6 HOH A 124 2124 2124 HOH HOH . F 6 HOH A 125 2125 2125 HOH HOH . F 6 HOH A 126 2126 2126 HOH HOH . F 6 HOH A 127 2127 2127 HOH HOH . F 6 HOH A 128 2128 2128 HOH HOH . F 6 HOH A 129 2129 2129 HOH HOH . F 6 HOH A 130 2130 2130 HOH HOH . F 6 HOH A 131 2131 2131 HOH HOH . F 6 HOH A 132 2132 2132 HOH HOH . F 6 HOH A 133 2133 2133 HOH HOH . F 6 HOH A 134 2134 2134 HOH HOH . F 6 HOH A 135 2135 2135 HOH HOH . F 6 HOH A 136 2136 2136 HOH HOH . F 6 HOH A 137 2137 2137 HOH HOH . F 6 HOH A 138 2138 2138 HOH HOH . F 6 HOH A 139 2139 2139 HOH HOH . F 6 HOH A 140 2140 2140 HOH HOH . F 6 HOH A 141 2141 2141 HOH HOH . F 6 HOH A 142 2142 2142 HOH HOH . F 6 HOH A 143 2143 2143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . A . B 2 -13.585 59.485 -0.776 0.7 54.03 ? O1 MTN 501 A 1 HETATM 2 O O1 MTN . B . B 2 -4.9 64.889 5.359 0.3 38.99 ? O1 MTN 501 A 1 HETATM 3 N N1 MTN . A . B 2 -12.768 59.664 0.406 0.7 51.54 ? N1 MTN 501 A 1 HETATM 4 N N1 MTN . B . B 2 -5.268 63.952 4.318 0.3 39 ? N1 MTN 501 A 1 HETATM 5 C C1 MTN . A . B 2 -11.73 58.611 0.665 0.7 48.32 ? C1 MTN 501 A 1 HETATM 6 C C1 MTN . B . B 2 -6.476 64.311 3.504 0.3 40.46 ? C1 MTN 501 A 1 HETATM 7 C C2 MTN . A . B 2 -10.7 59.448 1.374 0.7 48.71 ? C2 MTN 501 A 1 HETATM 8 C C2 MTN . B . B 2 -6.139 63.585 2.233 0.3 40.38 ? C2 MTN 501 A 1 HETATM 9 C C3 MTN . A . B 2 -10.946 60.75 1.327 0.7 49.1 ? C3 MTN 501 A 1 HETATM 10 C C3 MTN . B . B 2 -4.879 63.177 2.172 0.3 38.68 ? C3 MTN 501 A 1 HETATM 11 C C4 MTN . A . B 2 -10.094 61.789 1.991 0.7 45.59 ? C4 MTN 501 A 1 HETATM 12 C C4 MTN . B . B 2 -4.268 62.451 1.01 0.3 37.96 ? C4 MTN 501 A 1 HETATM 13 S S1 MTN . A . B 2 -8.702 62.309 0.951 0.7 43.29 ? S1 MTN 501 A 1 HETATM 14 S S1 MTN . B . B 2 -4.277 60.654 1.243 0.3 36.28 ? S1 MTN 501 A 1 HETATM 15 C C5 MTN . A . B 2 -12.175 61.089 0.515 0.7 52.03 ? C5 MTN 501 A 1 HETATM 16 C C5 MTN . B . B 2 -4.073 63.584 3.385 0.3 37.51 ? C5 MTN 501 A 1 HETATM 17 C C6 MTN . A . B 2 -11.843 61.67 -0.856 0.7 54.41 ? C6 MTN 501 A 1 HETATM 18 C C6 MTN . B . B 2 -3.129 64.751 3.107 0.3 36.6 ? C6 MTN 501 A 1 HETATM 19 C C7 MTN . A . B 2 -13.171 61.971 1.264 0.7 53.42 ? C7 MTN 501 A 1 HETATM 20 C C7 MTN . B . B 2 -3.331 62.419 4.037 0.3 37.24 ? C7 MTN 501 A 1 HETATM 21 C C8 MTN . A . B 2 -12.316 57.519 1.554 0.7 46.23 ? C8 MTN 501 A 1 HETATM 22 C C8 MTN . B . B 2 -7.739 63.778 4.173 0.3 41.31 ? C8 MTN 501 A 1 HETATM 23 C C9 MTN . A . B 2 -11.215 58.024 -0.647 0.7 47.53 ? C9 MTN 501 A 1 HETATM 24 C C9 MTN . B . B 2 -6.561 65.822 3.314 0.3 40.56 ? C9 MTN 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #