data_5G2C # _model_server_result.job_id NacUJQdsfeNTNx3n4kWjmQ _model_server_result.datetime_utc '2024-11-17 22:00:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1273}' # _entry.id 5G2C # _exptl.entry_id 5G2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.47 _cell.angle_gamma 90 _cell.entry_id 5G2C _cell.length_a 103.441 _cell.length_b 50.033 _cell.length_c 77.786 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 238 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 235 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 1273 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.227 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 346 n n C1 C6 RET sing 347 n n C1 C16 RET sing 348 n n C1 C17 RET sing 349 n n C2 C3 RET sing 350 n n C2 H21 RET sing 351 n n C2 H22 RET sing 352 n n C3 C4 RET sing 353 n n C3 H31 RET sing 354 n n C3 H32 RET sing 355 n n C4 C5 RET sing 356 n n C4 H41 RET sing 357 n n C4 H42 RET sing 358 n n C5 C6 RET doub 359 n n C5 C18 RET sing 360 n n C6 C7 RET sing 361 n n C7 C8 RET doub 362 e n C7 H7 RET sing 363 n n C8 C9 RET sing 364 n n C8 H8 RET sing 365 n n C9 C10 RET doub 366 e n C9 C19 RET sing 367 n n C10 C11 RET sing 368 n n C10 H10 RET sing 369 n n C11 C12 RET doub 370 e n C11 H11 RET sing 371 n n C12 C13 RET sing 372 n n C12 H12 RET sing 373 n n C13 C14 RET doub 374 e n C13 C20 RET sing 375 n n C14 C15 RET sing 376 n n C14 H14 RET sing 377 n n C15 O1 RET doub 378 n n C15 H15 RET sing 379 n n C16 H161 RET sing 380 n n C16 H162 RET sing 381 n n C16 H163 RET sing 382 n n C17 H171 RET sing 383 n n C17 H172 RET sing 384 n n C17 H173 RET sing 385 n n C18 H181 RET sing 386 n n C18 H182 RET sing 387 n n C18 H183 RET sing 388 n n C19 H191 RET sing 389 n n C19 H192 RET sing 390 n n C19 H193 RET sing 391 n n C20 H201 RET sing 392 n n C20 H202 RET sing 393 n n C20 H203 RET sing 394 n n # _atom_sites.entry_id 5G2C _atom_sites.fract_transf_matrix[1][1] 0.009667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008544 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLA A 1 1266 1266 OLA OLA . C 2 OLA A 1 1267 1267 OLA OLA . D 2 OLA A 1 1268 1268 OLA OLA . E 2 OLA A 1 1269 1269 OLA OLA . F 2 OLA A 1 1270 1270 OLA OLA . G 2 OLA A 1 1271 1271 OLA OLA . H 3 CL A 1 1272 1272 CL CL . I 4 RET A 1 1273 1273 RET RET . J 5 PEG A 1 1274 1274 PEG PEG . K 2 OLA A 1 1275 1275 OLA OLA . L 2 OLA A 1 1276 1276 OLA OLA . M 6 HOH A 1 2001 2001 HOH HOH . M 6 HOH A 2 2002 2002 HOH HOH . M 6 HOH A 3 2003 2003 HOH HOH . M 6 HOH A 4 2004 2004 HOH HOH . M 6 HOH A 5 2005 2005 HOH HOH . M 6 HOH A 6 2006 2006 HOH HOH . M 6 HOH A 7 2007 2007 HOH HOH . M 6 HOH A 8 2008 2008 HOH HOH . M 6 HOH A 9 2009 2009 HOH HOH . M 6 HOH A 10 2010 2010 HOH HOH . M 6 HOH A 11 2011 2011 HOH HOH . M 6 HOH A 12 2012 2012 HOH HOH . M 6 HOH A 13 2013 2013 HOH HOH . M 6 HOH A 14 2014 2014 HOH HOH . M 6 HOH A 15 2015 2015 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . I 4 -20.792 -7.562 -5.03 1 20.27 ? C1 RET 1273 A 1 HETATM 2 C C2 RET . . . I 4 -21.452 -8.519 -5.993 1 19 ? C2 RET 1273 A 1 HETATM 3 C C3 RET . . . I 4 -22.959 -8.443 -5.889 1 20.1 ? C3 RET 1273 A 1 HETATM 4 C C4 RET . . . I 4 -23.448 -8.741 -4.461 1 21.61 ? C4 RET 1273 A 1 HETATM 5 C C5 RET . . . I 4 -22.516 -8.234 -3.374 1 21.08 ? C5 RET 1273 A 1 HETATM 6 C C6 RET . . . I 4 -21.416 -7.551 -3.655 1 20.21 ? C6 RET 1273 A 1 HETATM 7 C C7 RET . . . I 4 -20.8 -6.754 -2.593 1 20.37 ? C7 RET 1273 A 1 HETATM 8 C C8 RET . . . I 4 -19.695 -6.055 -2.694 1 19.81 ? C8 RET 1273 A 1 HETATM 9 C C9 RET . . . I 4 -19.212 -5.28 -1.551 1 21.77 ? C9 RET 1273 A 1 HETATM 10 C C10 RET . . . I 4 -18.12 -4.503 -1.75 1 22.51 ? C10 RET 1273 A 1 HETATM 11 C C11 RET . . . I 4 -17.489 -3.619 -0.76 1 22.89 ? C11 RET 1273 A 1 HETATM 12 C C12 RET . . . I 4 -16.501 -2.844 -1.18 1 23.9 ? C12 RET 1273 A 1 HETATM 13 C C13 RET . . . I 4 -15.693 -1.957 -0.291 1 25.45 ? C13 RET 1273 A 1 HETATM 14 C C14 RET . . . I 4 -14.529 -1.51 -0.823 1 25.14 ? C14 RET 1273 A 1 HETATM 15 C C15 RET . . . I 4 -13.466 -0.724 -0.176 1 27.9 ? C15 RET 1273 A 1 HETATM 16 C C16 RET . . . I 4 -20.863 -6.148 -5.633 1 20.71 ? C16 RET 1273 A 1 HETATM 17 C C17 RET . . . I 4 -19.336 -7.988 -4.88 1 20.66 ? C17 RET 1273 A 1 HETATM 18 C C18 RET . . . I 4 -22.919 -8.564 -1.991 1 21.95 ? C18 RET 1273 A 1 HETATM 19 C C19 RET . . . I 4 -19.923 -5.332 -0.221 1 22.58 ? C19 RET 1273 A 1 HETATM 20 C C20 RET . . . I 4 -16.094 -1.632 1.121 1 24.9 ? C20 RET 1273 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #