data_5G3M
#
_model_server_result.job_id            znlKmGOYxsbZGzLQIIP7SA 
_model_server_result.datetime_utc      '2024-12-26 15:37:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5g3m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1128}' 
#
_entry.id    5G3M 
#
_exptl.entry_id    5G3M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5G3M 
_cell.length_a            27.57 
_cell.length_b            85.122 
_cell.length_c            103.316 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5G3M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,BA 1 1 
B,Q,R,S,T,U,V,W,X,Y,Z,AA,CA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf2 A SG CYS 25 A CYS 25 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 27 A CYS 27 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf4 A SG CYS 42 A CYS 42 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf5 A SG CYS 48 A CYS 48 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf6 A SG CYS 49 A CYS 49 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf7 A SG CYS 58 A CYS 58 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 A SG CYS 76 A CYS 76 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf9 B SG CYS 11 B CYS 11 1_555 B SG CYS 69 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf10 B SG CYS 25 B CYS 25 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf11 B SG CYS 27 B CYS 27 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf12 B SG CYS 42 B CYS 42 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf13 B SG CYS 48 B CYS 48 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 B SG CYS 49 B CYS 49 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf15 B SG CYS 58 B CYS 58 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf16 B SG CYS 76 B CYS 76 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc1 A O PHE 26 A PHE 26 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc2 A O GLY 28 A GLY 28 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc3 A O GLY 30 A GLY 30 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc4 A OD2 ASP 47 A ASP 47 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc5 A OD1 ASP 47 A ASP 47 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc6 C CA CA . A CA 200 1_555 H O4 PEG . A PEG 1128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc7 C CA CA . A CA 200 1_555 N O15 9JH . A 9JH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc8 B O PHE 26 B PHE 26 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc9 B O GLY 28 B GLY 28 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc10 B O GLY 30 B GLY 30 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc11 B OD1 ASP 47 B ASP 47 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc12 B OD2 ASP 47 B ASP 47 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc13 Q CA CA . B CA 200 1_555 Z O1 PEG . B PEG 1132 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc14 Q CA CA . B CA 200 1_555 Z O1 PEG . B PEG 1132 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc15 Q CA CA . B CA 200 1_555 AA O15 9JH . B 9JH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 113 n n 
S C1 DMS sing 114 n n 
S C2 DMS sing 115 n n 
C1 H11 DMS sing 116 n n 
C1 H12 DMS sing 117 n n 
C1 H13 DMS sing 118 n n 
C2 H21 DMS sing 119 n n 
C2 H22 DMS sing 120 n n 
C2 H23 DMS sing 121 n n 
#
_atom_sites.entry_id                     5G3M 
_atom_sites.fract_transf_matrix[1][1]    0.036271 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011748 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 200 200 CA CA . 
D 3 DMS A 1 1124 1124 DMS DMS . 
E 3 DMS A 1 1125 1125 DMS DMS . 
F 3 DMS A 1 1126 1126 DMS DMS . 
G 4 PEG A 1 1127 1127 PEG PEG . 
H 4 PEG A 1 1128 1128 PEG PEG . 
I 4 PEG A 1 1129 1129 PEG PEG . 
J 4 PEG A 1 1130 1130 PEG PEG . 
K 4 PEG A 1 1131 1131 PEG PEG . 
L 4 PEG A 1 1132 1132 PEG PEG . 
M 4 PEG A 1 1133 1133 PEG PEG . 
N 5 9JH A 1 1134 1134 9JH 9JH . 
O 3 DMS A 1 1140 1140 DMS DMS . 
P 3 DMS A 1 1141 1141 DMS DMS . 
Q 2 CA B 1 200 200 CA CA . 
R 3 DMS B 1 1124 1124 DMS DMS . 
S 3 DMS B 1 1125 1125 DMS DMS . 
T 3 DMS B 1 1126 1126 DMS DMS . 
U 3 DMS B 1 1127 1127 DMS DMS . 
V 3 DMS B 1 1128 1128 DMS DMS . 
W 4 PEG B 1 1129 1129 PEG PEG . 
X 4 PEG B 1 1130 1130 PEG PEG . 
Y 4 PEG B 1 1131 1131 PEG PEG . 
Z 4 PEG B 1 1132 1132 PEG PEG . 
AA 5 9JH B 1 1133 1133 9JH 9JH . 
BA 6 HOH A 1 2001 2001 HOH HOH . 
BA 6 HOH A 2 2002 2002 HOH HOH . 
BA 6 HOH A 3 2003 2003 HOH HOH . 
BA 6 HOH A 4 2004 2004 HOH HOH . 
BA 6 HOH A 5 2005 2005 HOH HOH . 
BA 6 HOH A 6 2006 2006 HOH HOH . 
BA 6 HOH A 7 2007 2007 HOH HOH . 
BA 6 HOH A 8 2008 2008 HOH HOH . 
BA 6 HOH A 9 2009 2009 HOH HOH . 
BA 6 HOH A 10 2010 2010 HOH HOH . 
BA 6 HOH A 11 2011 2011 HOH HOH . 
BA 6 HOH A 12 2012 2012 HOH HOH . 
BA 6 HOH A 13 2013 2013 HOH HOH . 
BA 6 HOH A 14 2014 2014 HOH HOH . 
BA 6 HOH A 15 2015 2015 HOH HOH . 
BA 6 HOH A 16 2016 2016 HOH HOH . 
BA 6 HOH A 17 2017 2017 HOH HOH . 
BA 6 HOH A 18 2018 2018 HOH HOH . 
BA 6 HOH A 19 2019 2019 HOH HOH . 
BA 6 HOH A 20 2020 2020 HOH HOH . 
BA 6 HOH A 21 2021 2021 HOH HOH . 
BA 6 HOH A 22 2022 2022 HOH HOH . 
BA 6 HOH A 23 2023 2023 HOH HOH . 
BA 6 HOH A 24 2024 2024 HOH HOH . 
BA 6 HOH A 25 2025 2025 HOH HOH . 
BA 6 HOH A 26 2026 2026 HOH HOH . 
BA 6 HOH A 27 2027 2027 HOH HOH . 
BA 6 HOH A 28 2028 2028 HOH HOH . 
BA 6 HOH A 29 2029 2029 HOH HOH . 
BA 6 HOH A 30 2030 2030 HOH HOH . 
BA 6 HOH A 31 2031 2031 HOH HOH . 
BA 6 HOH A 32 2032 2032 HOH HOH . 
BA 6 HOH A 33 2033 2033 HOH HOH . 
BA 6 HOH A 34 2034 2034 HOH HOH . 
BA 6 HOH A 35 2035 2035 HOH HOH . 
BA 6 HOH A 36 2036 2036 HOH HOH . 
BA 6 HOH A 37 2037 2037 HOH HOH . 
BA 6 HOH A 38 2038 2038 HOH HOH . 
BA 6 HOH A 39 2039 2039 HOH HOH . 
BA 6 HOH A 40 2040 2040 HOH HOH . 
BA 6 HOH A 41 2041 2041 HOH HOH . 
BA 6 HOH A 42 2042 2042 HOH HOH . 
BA 6 HOH A 43 2043 2043 HOH HOH . 
BA 6 HOH A 44 2044 2044 HOH HOH . 
BA 6 HOH A 45 2045 2045 HOH HOH . 
BA 6 HOH A 46 2046 2046 HOH HOH . 
BA 6 HOH A 47 2047 2047 HOH HOH . 
BA 6 HOH A 48 2048 2048 HOH HOH . 
BA 6 HOH A 49 2049 2049 HOH HOH . 
BA 6 HOH A 50 2050 2050 HOH HOH . 
BA 6 HOH A 51 2051 2051 HOH HOH . 
BA 6 HOH A 52 2052 2052 HOH HOH . 
BA 6 HOH A 53 2053 2053 HOH HOH . 
BA 6 HOH A 54 2054 2054 HOH HOH . 
BA 6 HOH A 55 2055 2055 HOH HOH . 
BA 6 HOH A 56 2056 2056 HOH HOH . 
BA 6 HOH A 57 2057 2057 HOH HOH . 
CA 6 HOH B 1 2001 2001 HOH HOH . 
CA 6 HOH B 2 2002 2002 HOH HOH . 
CA 6 HOH B 3 2003 2003 HOH HOH . 
CA 6 HOH B 4 2004 2004 HOH HOH . 
CA 6 HOH B 5 2005 2005 HOH HOH . 
CA 6 HOH B 6 2006 2006 HOH HOH . 
CA 6 HOH B 7 2007 2007 HOH HOH . 
CA 6 HOH B 8 2008 2008 HOH HOH . 
CA 6 HOH B 9 2009 2009 HOH HOH . 
CA 6 HOH B 10 2010 2010 HOH HOH . 
CA 6 HOH B 11 2011 2011 HOH HOH . 
CA 6 HOH B 12 2012 2012 HOH HOH . 
CA 6 HOH B 13 2013 2013 HOH HOH . 
CA 6 HOH B 14 2014 2014 HOH HOH . 
CA 6 HOH B 15 2015 2015 HOH HOH . 
CA 6 HOH B 16 2016 2016 HOH HOH . 
CA 6 HOH B 17 2017 2017 HOH HOH . 
CA 6 HOH B 18 2018 2018 HOH HOH . 
CA 6 HOH B 19 2019 2019 HOH HOH . 
CA 6 HOH B 20 2020 2020 HOH HOH . 
CA 6 HOH B 21 2021 2021 HOH HOH . 
CA 6 HOH B 22 2022 2022 HOH HOH . 
CA 6 HOH B 23 2023 2023 HOH HOH . 
CA 6 HOH B 24 2024 2024 HOH HOH . 
CA 6 HOH B 25 2025 2025 HOH HOH . 
CA 6 HOH B 26 2026 2026 HOH HOH . 
CA 6 HOH B 27 2027 2027 HOH HOH . 
CA 6 HOH B 28 2028 2028 HOH HOH . 
CA 6 HOH B 29 2029 2029 HOH HOH . 
CA 6 HOH B 30 2030 2030 HOH HOH . 
CA 6 HOH B 31 2031 2031 HOH HOH . 
CA 6 HOH B 32 2032 2032 HOH HOH . 
CA 6 HOH B 33 2033 2033 HOH HOH . 
CA 6 HOH B 34 2034 2034 HOH HOH . 
CA 6 HOH B 35 2035 2035 HOH HOH . 
CA 6 HOH B 36 2036 2036 HOH HOH . 
CA 6 HOH B 37 2037 2037 HOH HOH . 
CA 6 HOH B 38 2038 2038 HOH HOH . 
CA 6 HOH B 39 2039 2039 HOH HOH . 
CA 6 HOH B 40 2040 2040 HOH HOH . 
CA 6 HOH B 41 2041 2041 HOH HOH . 
CA 6 HOH B 42 2042 2042 HOH HOH . 
CA 6 HOH B 43 2043 2043 HOH HOH . 
CA 6 HOH B 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . V 3 -9.67 -8.882 25.814 1 37.21 ? S DMS 1128 B 1 
HETATM 2 O O DMS . . . V 3 -10.082 -10.107 25.103 1 34.82 ? O DMS 1128 B 1 
HETATM 3 C C1 DMS . . . V 3 -8.205 -8.275 25.216 1 36.64 ? C1 DMS 1128 B 1 
HETATM 4 C C2 DMS . . . V 3 -9.191 -9.258 27.416 1 35.09 ? C2 DMS 1128 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#