data_5G3M # _model_server_result.job_id 4Pha7xQyYpcgYFoZ5LFrbg _model_server_result.datetime_utc '2024-12-26 15:37:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1132}' # _entry.id 5G3M # _exptl.entry_id 5G3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G3M _cell.length_a 27.57 _cell.length_b 85.122 _cell.length_c 103.316 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,BA 1 1 B,Q,R,S,T,U,V,W,X,Y,Z,AA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 69 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 25 A CYS 25 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 27 A CYS 27 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 A SG CYS 42 A CYS 42 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 48 A CYS 48 1_555 A SG CYS 122 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 49 A CYS 49 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 58 A CYS 58 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 A SG CYS 76 A CYS 76 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf9 B SG CYS 11 B CYS 11 1_555 B SG CYS 69 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf10 B SG CYS 25 B CYS 25 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf11 B SG CYS 27 B CYS 27 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf12 B SG CYS 42 B CYS 42 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 B SG CYS 48 B CYS 48 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 49 B CYS 49 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf15 B SG CYS 58 B CYS 58 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf16 B SG CYS 76 B CYS 76 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc1 A O PHE 26 A PHE 26 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A O GLY 28 A GLY 28 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 A O GLY 30 A GLY 30 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 A OD2 ASP 47 A ASP 47 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc5 A OD1 ASP 47 A ASP 47 1_555 C CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc6 C CA CA . A CA 200 1_555 H O4 PEG . A PEG 1128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc7 C CA CA . A CA 200 1_555 N O15 9JH . A 9JH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc8 B O PHE 26 B PHE 26 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc9 B O GLY 28 B GLY 28 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc10 B O GLY 30 B GLY 30 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc11 B OD1 ASP 47 B ASP 47 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc12 B OD2 ASP 47 B ASP 47 1_555 Q CA CA . B CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc13 Q CA CA . B CA 200 1_555 Z O1 PEG . B PEG 1132 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.446 ? metalc ? metalc14 Q CA CA . B CA 200 1_555 Z O1 PEG . B PEG 1132 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.388 ? metalc ? metalc15 Q CA CA . B CA 200 1_555 AA O15 9JH . B 9JH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 276 n n C1 C2 PEG sing 277 n n C1 H11 PEG sing 278 n n C1 H12 PEG sing 279 n n O1 HO1 PEG sing 280 n n C2 O2 PEG sing 281 n n C2 H21 PEG sing 282 n n C2 H22 PEG sing 283 n n O2 C3 PEG sing 284 n n C3 C4 PEG sing 285 n n C3 H31 PEG sing 286 n n C3 H32 PEG sing 287 n n C4 O4 PEG sing 288 n n C4 H41 PEG sing 289 n n C4 H42 PEG sing 290 n n O4 HO4 PEG sing 291 n n # _atom_sites.entry_id 5G3M _atom_sites.fract_transf_matrix[1][1] 0.036271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 200 200 CA CA . D 3 DMS A 1 1124 1124 DMS DMS . E 3 DMS A 1 1125 1125 DMS DMS . F 3 DMS A 1 1126 1126 DMS DMS . G 4 PEG A 1 1127 1127 PEG PEG . H 4 PEG A 1 1128 1128 PEG PEG . I 4 PEG A 1 1129 1129 PEG PEG . J 4 PEG A 1 1130 1130 PEG PEG . K 4 PEG A 1 1131 1131 PEG PEG . L 4 PEG A 1 1132 1132 PEG PEG . M 4 PEG A 1 1133 1133 PEG PEG . N 5 9JH A 1 1134 1134 9JH 9JH . O 3 DMS A 1 1140 1140 DMS DMS . P 3 DMS A 1 1141 1141 DMS DMS . Q 2 CA B 1 200 200 CA CA . R 3 DMS B 1 1124 1124 DMS DMS . S 3 DMS B 1 1125 1125 DMS DMS . T 3 DMS B 1 1126 1126 DMS DMS . U 3 DMS B 1 1127 1127 DMS DMS . V 3 DMS B 1 1128 1128 DMS DMS . W 4 PEG B 1 1129 1129 PEG PEG . X 4 PEG B 1 1130 1130 PEG PEG . Y 4 PEG B 1 1131 1131 PEG PEG . Z 4 PEG B 1 1132 1132 PEG PEG . AA 5 9JH B 1 1133 1133 9JH 9JH . BA 6 HOH A 1 2001 2001 HOH HOH . BA 6 HOH A 2 2002 2002 HOH HOH . BA 6 HOH A 3 2003 2003 HOH HOH . BA 6 HOH A 4 2004 2004 HOH HOH . BA 6 HOH A 5 2005 2005 HOH HOH . BA 6 HOH A 6 2006 2006 HOH HOH . BA 6 HOH A 7 2007 2007 HOH HOH . BA 6 HOH A 8 2008 2008 HOH HOH . BA 6 HOH A 9 2009 2009 HOH HOH . BA 6 HOH A 10 2010 2010 HOH HOH . BA 6 HOH A 11 2011 2011 HOH HOH . BA 6 HOH A 12 2012 2012 HOH HOH . BA 6 HOH A 13 2013 2013 HOH HOH . BA 6 HOH A 14 2014 2014 HOH HOH . BA 6 HOH A 15 2015 2015 HOH HOH . BA 6 HOH A 16 2016 2016 HOH HOH . BA 6 HOH A 17 2017 2017 HOH HOH . BA 6 HOH A 18 2018 2018 HOH HOH . BA 6 HOH A 19 2019 2019 HOH HOH . BA 6 HOH A 20 2020 2020 HOH HOH . BA 6 HOH A 21 2021 2021 HOH HOH . BA 6 HOH A 22 2022 2022 HOH HOH . BA 6 HOH A 23 2023 2023 HOH HOH . BA 6 HOH A 24 2024 2024 HOH HOH . BA 6 HOH A 25 2025 2025 HOH HOH . BA 6 HOH A 26 2026 2026 HOH HOH . BA 6 HOH A 27 2027 2027 HOH HOH . BA 6 HOH A 28 2028 2028 HOH HOH . BA 6 HOH A 29 2029 2029 HOH HOH . BA 6 HOH A 30 2030 2030 HOH HOH . BA 6 HOH A 31 2031 2031 HOH HOH . BA 6 HOH A 32 2032 2032 HOH HOH . BA 6 HOH A 33 2033 2033 HOH HOH . BA 6 HOH A 34 2034 2034 HOH HOH . BA 6 HOH A 35 2035 2035 HOH HOH . BA 6 HOH A 36 2036 2036 HOH HOH . BA 6 HOH A 37 2037 2037 HOH HOH . BA 6 HOH A 38 2038 2038 HOH HOH . BA 6 HOH A 39 2039 2039 HOH HOH . BA 6 HOH A 40 2040 2040 HOH HOH . BA 6 HOH A 41 2041 2041 HOH HOH . BA 6 HOH A 42 2042 2042 HOH HOH . BA 6 HOH A 43 2043 2043 HOH HOH . BA 6 HOH A 44 2044 2044 HOH HOH . BA 6 HOH A 45 2045 2045 HOH HOH . BA 6 HOH A 46 2046 2046 HOH HOH . BA 6 HOH A 47 2047 2047 HOH HOH . BA 6 HOH A 48 2048 2048 HOH HOH . BA 6 HOH A 49 2049 2049 HOH HOH . BA 6 HOH A 50 2050 2050 HOH HOH . BA 6 HOH A 51 2051 2051 HOH HOH . BA 6 HOH A 52 2052 2052 HOH HOH . BA 6 HOH A 53 2053 2053 HOH HOH . BA 6 HOH A 54 2054 2054 HOH HOH . BA 6 HOH A 55 2055 2055 HOH HOH . BA 6 HOH A 56 2056 2056 HOH HOH . BA 6 HOH A 57 2057 2057 HOH HOH . CA 6 HOH B 1 2001 2001 HOH HOH . CA 6 HOH B 2 2002 2002 HOH HOH . CA 6 HOH B 3 2003 2003 HOH HOH . CA 6 HOH B 4 2004 2004 HOH HOH . CA 6 HOH B 5 2005 2005 HOH HOH . CA 6 HOH B 6 2006 2006 HOH HOH . CA 6 HOH B 7 2007 2007 HOH HOH . CA 6 HOH B 8 2008 2008 HOH HOH . CA 6 HOH B 9 2009 2009 HOH HOH . CA 6 HOH B 10 2010 2010 HOH HOH . CA 6 HOH B 11 2011 2011 HOH HOH . CA 6 HOH B 12 2012 2012 HOH HOH . CA 6 HOH B 13 2013 2013 HOH HOH . CA 6 HOH B 14 2014 2014 HOH HOH . CA 6 HOH B 15 2015 2015 HOH HOH . CA 6 HOH B 16 2016 2016 HOH HOH . CA 6 HOH B 17 2017 2017 HOH HOH . CA 6 HOH B 18 2018 2018 HOH HOH . CA 6 HOH B 19 2019 2019 HOH HOH . CA 6 HOH B 20 2020 2020 HOH HOH . CA 6 HOH B 21 2021 2021 HOH HOH . CA 6 HOH B 22 2022 2022 HOH HOH . CA 6 HOH B 23 2023 2023 HOH HOH . CA 6 HOH B 24 2024 2024 HOH HOH . CA 6 HOH B 25 2025 2025 HOH HOH . CA 6 HOH B 26 2026 2026 HOH HOH . CA 6 HOH B 27 2027 2027 HOH HOH . CA 6 HOH B 28 2028 2028 HOH HOH . CA 6 HOH B 29 2029 2029 HOH HOH . CA 6 HOH B 30 2030 2030 HOH HOH . CA 6 HOH B 31 2031 2031 HOH HOH . CA 6 HOH B 32 2032 2032 HOH HOH . CA 6 HOH B 33 2033 2033 HOH HOH . CA 6 HOH B 34 2034 2034 HOH HOH . CA 6 HOH B 35 2035 2035 HOH HOH . CA 6 HOH B 36 2036 2036 HOH HOH . CA 6 HOH B 37 2037 2037 HOH HOH . CA 6 HOH B 38 2038 2038 HOH HOH . CA 6 HOH B 39 2039 2039 HOH HOH . CA 6 HOH B 40 2040 2040 HOH HOH . CA 6 HOH B 41 2041 2041 HOH HOH . CA 6 HOH B 42 2042 2042 HOH HOH . CA 6 HOH B 43 2043 2043 HOH HOH . CA 6 HOH B 44 2044 2044 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . A . Z 4 -1.175 -24.683 28.42 0.5 22.58 ? C1 PEG 1132 B 1 HETATM 2 C C1 PEG . B . Z 4 -1.112 -26.487 28.098 0.5 22.2 ? C1 PEG 1132 B 1 HETATM 3 O O1 PEG . A . Z 4 -1.041 -25.84 29.25 0.5 22.69 ? O1 PEG 1132 B 1 HETATM 4 O O1 PEG . B . Z 4 -1.057 -25.783 29.356 0.5 22.23 ? O1 PEG 1132 B 1 HETATM 5 C C2 PEG . A . Z 4 -1.198 -25.06 26.939 0.5 23.06 ? C2 PEG 1132 B 1 HETATM 6 C C2 PEG . B . Z 4 -0.965 -25.491 26.977 0.5 22.95 ? C2 PEG 1132 B 1 HETATM 7 O O2 PEG . A . Z 4 -0.622 -26.35 26.707 0.5 23.5 ? O2 PEG 1132 B 1 HETATM 8 O O2 PEG . B . Z 4 -1.974 -24.501 27.165 0.5 23.45 ? O2 PEG 1132 B 1 HETATM 9 C C3 PEG . A . Z 4 -0.59 -26.625 25.304 0.5 22.4 ? C3 PEG 1132 B 1 HETATM 10 C C3 PEG . B . Z 4 -1.493 -23.472 28.027 0.5 22.77 ? C3 PEG 1132 B 1 HETATM 11 C C4 PEG . A . Z 4 0.426 -25.73 24.599 0.5 22.64 ? C4 PEG 1132 B 1 HETATM 12 C C4 PEG . B . Z 4 -2.627 -22.524 28.366 0.5 22.74 ? C4 PEG 1132 B 1 HETATM 13 O O4 PEG . A . Z 4 0.046 -24.351 24.67 0.5 22.98 ? O4 PEG 1132 B 1 HETATM 14 O O4 PEG . B . Z 4 -2.344 -21.91 29.635 0.5 23.45 ? O4 PEG 1132 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #