data_5G4E # _model_server_result.job_id u3QKV36Bgt8aT-poswSoZw _model_server_result.datetime_utc '2024-11-23 11:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1247}' # _entry.id 5G4E # _exptl.entry_id 5G4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G4E _cell.length_a 48.817 _cell.length_b 88.83 _cell.length_c 117.785 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 72 A VAL 69 1_555 D NA NA . A NA 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 A O VAL 75 A VAL 72 1_555 D NA NA . A NA 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A O PRO 165 A PRO 162 2_565 J NA NA . B NA 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 D NA NA . A NA 1246 1_555 L O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc5 D NA NA . A NA 1246 1_555 B O PRO 165 B PRO 162 2_464 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc6 B O VAL 72 B VAL 69 1_555 J NA NA . B NA 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc7 B O VAL 75 B VAL 72 1_555 J NA NA . B NA 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc8 J NA NA . B NA 1248 1_555 M O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 136 n n C1 C2 GOL sing 137 n n C1 H11 GOL sing 138 n n C1 H12 GOL sing 139 n n O1 HO1 GOL sing 140 n n C2 O2 GOL sing 141 n n C2 C3 GOL sing 142 n n C2 H2 GOL sing 143 n n O2 HO2 GOL sing 144 n n C3 O3 GOL sing 145 n n C3 H31 GOL sing 146 n n C3 H32 GOL sing 147 n n O3 HO3 GOL sing 148 n n # _atom_sites.entry_id 5G4E _atom_sites.fract_transf_matrix[1][1] 0.020485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1245 1245 SO4 SO4 . D 3 NA A 1 1246 1246 NA NA . E 3 NA A 1 1247 1247 NA NA . F 4 ACY A 1 1248 1248 ACY ACY . G 4 ACY B 1 1245 1245 ACY ACY . H 2 SO4 B 1 1246 1246 SO4 SO4 . I 5 GOL B 1 1247 1247 GOL GOL . J 3 NA B 1 1248 1248 NA NA . K 3 NA B 1 1249 1249 NA NA . L 6 HOH A 1 2001 2001 HOH HOH . L 6 HOH A 2 2002 2002 HOH HOH . L 6 HOH A 3 2003 2003 HOH HOH . L 6 HOH A 4 2004 2004 HOH HOH . L 6 HOH A 5 2005 2005 HOH HOH . L 6 HOH A 6 2006 2006 HOH HOH . L 6 HOH A 7 2007 2007 HOH HOH . L 6 HOH A 8 2008 2008 HOH HOH . L 6 HOH A 9 2009 2009 HOH HOH . L 6 HOH A 10 2010 2010 HOH HOH . L 6 HOH A 11 2011 2011 HOH HOH . L 6 HOH A 12 2012 2012 HOH HOH . L 6 HOH A 13 2013 2013 HOH HOH . L 6 HOH A 14 2014 2014 HOH HOH . L 6 HOH A 15 2015 2015 HOH HOH . L 6 HOH A 16 2016 2016 HOH HOH . L 6 HOH A 17 2017 2017 HOH HOH . L 6 HOH A 18 2018 2018 HOH HOH . M 6 HOH B 1 2001 2001 HOH HOH . M 6 HOH B 2 2002 2002 HOH HOH . M 6 HOH B 3 2003 2003 HOH HOH . M 6 HOH B 4 2004 2004 HOH HOH . M 6 HOH B 5 2005 2005 HOH HOH . M 6 HOH B 6 2006 2006 HOH HOH . M 6 HOH B 7 2007 2007 HOH HOH . M 6 HOH B 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -3.978 45.842 75.015 1 37.17 ? C1 GOL 1247 B 1 HETATM 2 O O1 GOL . . . I 5 -3.626 44.86 74.066 1 44.86 ? O1 GOL 1247 B 1 HETATM 3 C C2 GOL . . . I 5 -3.585 45.375 76.413 1 40.58 ? C2 GOL 1247 B 1 HETATM 4 O O2 GOL . . . I 5 -4.687 45.491 77.286 1 43.52 ? O2 GOL 1247 B 1 HETATM 5 C C3 GOL . . . I 5 -3.109 43.927 76.374 1 40.43 ? C3 GOL 1247 B 1 HETATM 6 O O3 GOL . . . I 5 -2.551 43.582 77.623 1 37.69 ? O3 GOL 1247 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #