data_5G53 # _model_server_result.job_id yEDbgu-2VF-inys_GzAzdg _model_server_result.datetime_utc '2024-11-24 07:32:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 5G53 # _exptl.entry_id 5G53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.293 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G53 _cell.length_a 90.632 _cell.length_b 111.814 _cell.length_c 161.304 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,I 1 1 B,D,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 74 A CYS 74 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 77 A CYS 77 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 259 A CYS 259 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 71 B CYS 71 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 B SG CYS 74 B CYS 74 1_555 B SG CYS 146 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 B SG CYS 77 B CYS 77 1_555 B SG CYS 166 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 259 B CYS 259 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? # _chem_comp.formula 'C12 H16 N6 O4' _chem_comp.formula_weight 308.293 _chem_comp.id NEC _chem_comp.mon_nstd_flag . _chem_comp.name "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5' O5' NEC doub 280 n n C5' N5' NEC sing 281 n n C5' C4' NEC sing 282 n n N5' C51 NEC sing 283 n n N5' HN5 NEC sing 284 n n C51 C52 NEC sing 285 n n C51 H511 NEC sing 286 n n C51 H512 NEC sing 287 n n C52 H521 NEC sing 288 n n C52 H522 NEC sing 289 n n C52 H523 NEC sing 290 n n C4' O4' NEC sing 291 n n C4' C3' NEC sing 292 n n C4' H4' NEC sing 293 n n O4' C1' NEC sing 294 n n C3' O3' NEC sing 295 n n C3' C2' NEC sing 296 n n C3' H3' NEC sing 297 n n O3' HO3' NEC sing 298 n n C2' O2' NEC sing 299 n n C2' C1' NEC sing 300 n n C2' H2' NEC sing 301 n n O2' HO2' NEC sing 302 n n C1' N9 NEC sing 303 n n C1' H1' NEC sing 304 n n N9 C8 NEC sing 305 n y N9 C4 NEC sing 306 n y C8 N7 NEC doub 307 n y C8 H8 NEC sing 308 n n N7 C5 NEC sing 309 n y C5 C6 NEC sing 310 n y C5 C4 NEC doub 311 n y C6 N6 NEC sing 312 n n C6 N1 NEC doub 313 n y N6 HN61 NEC sing 314 n n N6 HN62 NEC sing 315 n n N1 C2 NEC sing 316 n y C2 N3 NEC doub 317 n y C2 H2 NEC sing 318 n n N3 C4 NEC sing 319 n y # _atom_sites.entry_id 5G53 _atom_sites.fract_transf_matrix[1][1] 0.011034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NEC A 1 400 400 NEC NEC . F 4 SOG A 1 501 501 SOG SOG . G 4 SOG A 1 502 502 SOG SOG . H 3 NEC B 1 400 400 NEC NEC . I 5 GDP C 1 400 400 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5' NEC . . . E 3 -3.969 -41.658 19.108 1 63.27 ? C5' NEC 400 A 1 HETATM 2 O O5' NEC . . . E 3 -2.768 -41.854 19.243 1 63.41 ? O5' NEC 400 A 1 HETATM 3 N N5' NEC . . . E 3 -4.509 -41.284 17.948 1 65.58 ? N5' NEC 400 A 1 HETATM 4 C C51 NEC . . . E 3 -3.709 -41.117 16.75 1 67.72 ? C51 NEC 400 A 1 HETATM 5 C C52 NEC . . . E 3 -4.549 -40.861 15.524 1 68.99 ? C52 NEC 400 A 1 HETATM 6 C C4' NEC . . . E 3 -4.932 -41.86 20.245 1 62.36 ? C4' NEC 400 A 1 HETATM 7 O O4' NEC . . . E 3 -5.278 -43.248 20.254 1 63.63 ? O4' NEC 400 A 1 HETATM 8 C C3' NEC . . . E 3 -4.379 -41.51 21.627 1 62.57 ? C3' NEC 400 A 1 HETATM 9 O O3' NEC . . . E 3 -4.939 -40.291 22.133 1 61.16 ? O3' NEC 400 A 1 HETATM 10 C C2' NEC . . . E 3 -4.722 -42.709 22.499 1 63.91 ? C2' NEC 400 A 1 HETATM 11 O O2' NEC . . . E 3 -5.882 -42.493 23.316 1 67.86 ? O2' NEC 400 A 1 HETATM 12 C C1' NEC . . . E 3 -4.996 -43.848 21.526 1 63.37 ? C1' NEC 400 A 1 HETATM 13 N N9 NEC . . . E 3 -3.829 -44.778 21.459 1 61.21 ? N9 NEC 400 A 1 HETATM 14 C C8 NEC . . . E 3 -2.918 -44.901 20.465 1 59.46 ? C8 NEC 400 A 1 HETATM 15 N N7 NEC . . . E 3 -2.003 -45.856 20.763 1 58.21 ? N7 NEC 400 A 1 HETATM 16 C C5 NEC . . . E 3 -2.325 -46.356 21.964 1 59.06 ? C5 NEC 400 A 1 HETATM 17 C C6 NEC . . . E 3 -1.785 -47.394 22.871 1 61.08 ? C6 NEC 400 A 1 HETATM 18 N N6 NEC . . . E 3 -0.678 -48.091 22.524 1 64.53 ? N6 NEC 400 A 1 HETATM 19 N N1 NEC . . . E 3 -2.429 -47.617 24.045 1 59.08 ? N1 NEC 400 A 1 HETATM 20 C C2 NEC . . . E 3 -3.532 -46.922 24.4 1 57.52 ? C2 NEC 400 A 1 HETATM 21 N N3 NEC . . . E 3 -4.071 -45.964 23.62 1 56.51 ? N3 NEC 400 A 1 HETATM 22 C C4 NEC . . . E 3 -3.529 -45.65 22.418 1 58.57 ? C4 NEC 400 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #