data_5G53
#
_model_server_result.job_id            '_DF9J6ywW1ZXLa2xfn8Gjw' 
_model_server_result.datetime_utc      '2024-11-04 20:15:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5g53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":400}' 
#
_entry.id    5G53 
#
_exptl.entry_id    5G53 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.293 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5G53 
_cell.length_a            90.632 
_cell.length_b            111.814 
_cell.length_c            161.304 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5G53 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,I 1 1 
B,D,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 71 A CYS 71 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 74 A CYS 74 1_555 A SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 77 A CYS 77 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 259 A CYS 259 1_555 A SG CYS 262 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 71 B CYS 71 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf6 B SG CYS 74 B CYS 74 1_555 B SG CYS 146 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 B SG CYS 77 B CYS 77 1_555 B SG CYS 166 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 B SG CYS 259 B CYS 259 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C12 H16 N6 O4' 
_chem_comp.formula_weight    308.293 
_chem_comp.id                NEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5' O5' NEC doub 280 n n 
C5' N5' NEC sing 281 n n 
C5' C4' NEC sing 282 n n 
N5' C51 NEC sing 283 n n 
N5' HN5 NEC sing 284 n n 
C51 C52 NEC sing 285 n n 
C51 H511 NEC sing 286 n n 
C51 H512 NEC sing 287 n n 
C52 H521 NEC sing 288 n n 
C52 H522 NEC sing 289 n n 
C52 H523 NEC sing 290 n n 
C4' O4' NEC sing 291 n n 
C4' C3' NEC sing 292 n n 
C4' H4' NEC sing 293 n n 
O4' C1' NEC sing 294 n n 
C3' O3' NEC sing 295 n n 
C3' C2' NEC sing 296 n n 
C3' H3' NEC sing 297 n n 
O3' HO3' NEC sing 298 n n 
C2' O2' NEC sing 299 n n 
C2' C1' NEC sing 300 n n 
C2' H2' NEC sing 301 n n 
O2' HO2' NEC sing 302 n n 
C1' N9 NEC sing 303 n n 
C1' H1' NEC sing 304 n n 
N9 C8 NEC sing 305 n y 
N9 C4 NEC sing 306 n y 
C8 N7 NEC doub 307 n y 
C8 H8 NEC sing 308 n n 
N7 C5 NEC sing 309 n y 
C5 C6 NEC sing 310 n y 
C5 C4 NEC doub 311 n y 
C6 N6 NEC sing 312 n n 
C6 N1 NEC doub 313 n y 
N6 HN61 NEC sing 314 n n 
N6 HN62 NEC sing 315 n n 
N1 C2 NEC sing 316 n y 
C2 N3 NEC doub 317 n y 
C2 H2 NEC sing 318 n n 
N3 C4 NEC sing 319 n y 
#
_atom_sites.entry_id                     5G53 
_atom_sites.fract_transf_matrix[1][1]    0.011034 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NEC A 1 400 400 NEC NEC . 
F 4 SOG A 1 501 501 SOG SOG . 
G 4 SOG A 1 502 502 SOG SOG . 
H 3 NEC B 1 400 400 NEC NEC . 
I 5 GDP C 1 400 400 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5' NEC . . . H 3 -36.283 7.582 34.396 1 73.67 ? C5' NEC 400 B 1 
HETATM 2 O O5' NEC . . . H 3 -36.944 6.716 34.945 1 70.34 ? O5' NEC 400 B 1 
HETATM 3 N N5' NEC . . . H 3 -36.516 8.883 34.573 1 76.14 ? N5' NEC 400 B 1 
HETATM 4 C C51 NEC . . . H 3 -37.561 9.365 35.458 1 77.53 ? C51 NEC 400 B 1 
HETATM 5 C C52 NEC . . . H 3 -37.516 10.863 35.642 1 77.78 ? C52 NEC 400 B 1 
HETATM 6 C C4' NEC . . . H 3 -35.128 7.232 33.501 1 73.59 ? C4' NEC 400 B 1 
HETATM 7 O O4' NEC . . . H 3 -33.987 7.062 34.343 1 74.68 ? O4' NEC 400 B 1 
HETATM 8 C C3' NEC . . . H 3 -35.302 5.946 32.69 1 72.12 ? C3' NEC 400 B 1 
HETATM 9 O O3' NEC . . . H 3 -35.554 6.217 31.308 1 71.35 ? O3' NEC 400 B 1 
HETATM 10 C C2' NEC . . . H 3 -34.008 5.175 32.904 1 72.34 ? C2' NEC 400 B 1 
HETATM 11 O O2' NEC . . . H 3 -33.096 5.304 31.806 1 68.85 ? O2' NEC 400 B 1 
HETATM 12 C C1' NEC . . . H 3 -33.384 5.778 34.163 1 74.52 ? C1' NEC 400 B 1 
HETATM 13 N N9 NEC . . . H 3 -33.609 4.889 35.342 1 75.39 ? N9 NEC 400 B 1 
HETATM 14 C C8 NEC . . . H 3 -34.473 5.067 36.368 1 73.87 ? C8 NEC 400 B 1 
HETATM 15 N N7 NEC . . . H 3 -34.395 4.038 37.248 1 71 ? N7 NEC 400 B 1 
HETATM 16 C C5 NEC . . . H 3 -33.472 3.183 36.787 1 71.41 ? C5 NEC 400 B 1 
HETATM 17 C C6 NEC . . . H 3 -32.893 1.897 37.223 1 73.34 ? C6 NEC 400 B 1 
HETATM 18 N N6 NEC . . . H 3 -33.317 1.319 38.37 1 78.04 ? N6 NEC 400 B 1 
HETATM 19 N N1 NEC . . . H 3 -31.936 1.327 36.449 1 72.14 ? N1 NEC 400 B 1 
HETATM 20 C C2 NEC . . . H 3 -31.508 1.899 35.305 1 73.47 ? C2 NEC 400 B 1 
HETATM 21 N N3 NEC . . . H 3 -31.994 3.073 34.852 1 73.46 ? N3 NEC 400 B 1 
HETATM 22 C C4 NEC . . . H 3 -32.952 3.747 35.537 1 73.38 ? C4 NEC 400 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#