data_5G5J # _model_server_result.job_id LWd0C-BGLXfUwIh7QngKZQ _model_server_result.datetime_utc '2024-11-04 23:03:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 5G5J # _exptl.entry_id 5G5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 129.164 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Metformin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G5J _cell.length_a 77 _cell.length_b 101.07 _cell.length_c 128.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 77 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 700 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.26 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H11 N5' _chem_comp.formula_weight 129.164 _chem_comp.id MF8 _chem_comp.mon_nstd_flag . _chem_comp.name Metformin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N,N-Dimethylimidodicarbonimidic diamide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N08 C07 MF8 doub 319 n n C07 N09 MF8 sing 320 n n C07 N06 MF8 sing 321 n n N06 C04 MF8 sing 322 n n C04 N05 MF8 doub 323 n n C04 N02 MF8 sing 324 n n N02 C03 MF8 sing 325 n n N02 C01 MF8 sing 326 n n N08 H08 MF8 sing 327 n n N09 H091 MF8 sing 328 n n N09 H092 MF8 sing 329 n n N06 H06 MF8 sing 330 n n N05 H05 MF8 sing 331 n n C03 H031 MF8 sing 332 n n C03 H032 MF8 sing 333 n n C03 H033 MF8 sing 334 n n C01 H011 MF8 sing 335 n n C01 H012 MF8 sing 336 n n C01 H013 MF8 sing 337 n n # _atom_sites.entry_id 5G5J _atom_sites.fract_transf_matrix[1][1] 0.012987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MF8 A 1 600 600 MF8 MF8 . C 3 HEM A 1 700 700 HEM HEM . D 4 HOH A 1 2002 2002 HOH HOH . D 4 HOH A 2 2004 2004 HOH HOH . D 4 HOH A 3 2005 2005 HOH HOH . D 4 HOH A 4 2006 2006 HOH HOH . D 4 HOH A 5 2008 2008 HOH HOH . D 4 HOH A 6 2009 2009 HOH HOH . D 4 HOH A 7 2010 2010 HOH HOH . D 4 HOH A 8 2012 2012 HOH HOH . D 4 HOH A 9 2013 2013 HOH HOH . D 4 HOH A 10 2014 2014 HOH HOH . D 4 HOH A 11 2015 2015 HOH HOH . D 4 HOH A 12 2016 2016 HOH HOH . D 4 HOH A 13 2017 2017 HOH HOH . D 4 HOH A 14 2018 2018 HOH HOH . D 4 HOH A 15 2019 2019 HOH HOH . D 4 HOH A 16 2020 2020 HOH HOH . D 4 HOH A 17 2021 2021 HOH HOH . D 4 HOH A 18 2022 2022 HOH HOH . D 4 HOH A 19 2023 2023 HOH HOH . D 4 HOH A 20 2025 2025 HOH HOH . D 4 HOH A 21 2026 2026 HOH HOH . D 4 HOH A 22 2027 2027 HOH HOH . D 4 HOH A 23 2028 2028 HOH HOH . D 4 HOH A 24 2029 2029 HOH HOH . D 4 HOH A 25 2030 2030 HOH HOH . D 4 HOH A 26 2031 2031 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N08 MF8 . . . B 2 19.38 -17.49 12.219 1 92.99 ? N08 MF8 600 A 1 HETATM 2 C C07 MF8 . . . B 2 19.516 -18.474 11.432 1 100.85 ? C07 MF8 600 A 1 HETATM 3 N N06 MF8 . . . B 2 20.012 -18.275 10.198 1 103.19 ? N06 MF8 600 A 1 HETATM 4 N N09 MF8 . . . B 2 19.199 -19.706 11.857 1 93.71 ? N09 MF8 600 A 1 HETATM 5 C C01 MF8 . . . B 2 18.646 -20.731 8.702 1 102.4 ? C01 MF8 600 A 1 HETATM 6 N N02 MF8 . . . B 2 19.329 -19.499 8.311 1 108.72 ? N02 MF8 600 A 1 HETATM 7 N N05 MF8 . . . B 2 18.666 -17.352 8.668 1 83.8 ? N05 MF8 600 A 1 HETATM 8 C C04 MF8 . . . B 2 19.313 -18.367 9.055 1 101.45 ? C04 MF8 600 A 1 HETATM 9 C C03 MF8 . . . B 2 20.037 -19.617 7.036 1 94.03 ? C03 MF8 600 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #