data_5G5N # _model_server_result.job_id 6aqH2Dyf36GxjCjEMaYuQg _model_server_result.datetime_utc '2025-03-21 23:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1377}' # _entry.id 5G5N # _exptl.entry_id 5G5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.625 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL MERCURY ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G5N _cell.length_a 149.259 _cell.length_b 149.259 _cell.length_c 108.689 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 Z N N ? 3 AA N N ? 3 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 188 A ASN 208 1_555 H HG MMC . A MMC 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc2 A O CYS 199 A CYS 219 1_555 G HG MMC . A MMC 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc3 I HG MMC . A MMC 1379 1_555 L CL CL . A CL 1382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc4 B OD1 ASN 198 B ASN 218 1_555 Q HG MMC . B MMC 1376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc5 B O CYS 199 B CYS 219 1_555 P HG MMC . B MMC 1375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc6 B ND1 HIS 232 B HIS 252 1_555 Q HG MMC . B MMC 1376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc7 R HG MMC . B MMC 1377 1_555 U CL CL . B CL 1380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc8 C O CYS 199 C CYS 219 1_555 Z HG MMC . C MMC 1375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc9 C NE2 HIS 222 C HIS 242 1_555 AA HG MMC . C MMC 1376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc10 BA HG MMC . C MMC 1377 1_555 EA CL CL . C CL 1380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? # _chem_comp.formula 'C H3 Hg 1' _chem_comp.formula_weight 215.625 _chem_comp.id MMC _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL MERCURY ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG C MMC sing 250 n n C H1 MMC sing 251 n n C H2 MMC sing 252 n n C H3 MMC sing 253 n n # _atom_sites.entry_id 5G5N _atom_sites.fract_transf_matrix[1][1] 0.0067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 1374 1374 GOL GOL . E 2 GOL A 1 1375 1375 GOL GOL . F 2 GOL A 1 1376 1376 GOL GOL . G 3 MMC A 1 1377 1377 MMC MMC . H 3 MMC A 1 1378 1378 MMC MMC . I 3 MMC A 1 1379 1379 MMC MMC . J 4 CL A 1 1380 1380 CL CL . K 4 CL A 1 1381 1381 CL CL . L 4 CL A 1 1382 1382 CL CL . M 4 CL A 1 1383 1383 CL CL . N 4 CL A 1 1384 1384 CL CL . O 2 GOL B 1 1374 1374 GOL GOL . P 3 MMC B 1 1375 1375 MMC MMC . Q 3 MMC B 1 1376 1376 MMC MMC . R 3 MMC B 1 1377 1377 MMC MMC . S 3 MMC B 1 1378 1378 MMC MMC . T 4 CL B 1 1379 1379 CL CL . U 4 CL B 1 1380 1380 CL CL . V 4 CL B 1 1381 1381 CL CL . W 4 CL B 1 2000 2000 CL CL . X 4 CL B 1 2001 2001 CL CL . Y 2 GOL C 1 1374 1374 GOL GOL . Z 3 MMC C 1 1375 1375 MMC MMC . AA 3 MMC C 1 1376 1376 MMC MMC . BA 3 MMC C 1 1377 1377 MMC MMC . CA 4 CL C 1 1378 1378 CL CL . DA 4 CL C 1 1379 1379 CL CL . EA 4 CL C 1 1380 1380 CL CL . FA 4 CL C 1 1381 1381 CL CL . GA 5 HOH A 1 3001 3001 HOH HOH . GA 5 HOH A 2 3002 3002 HOH HOH . GA 5 HOH A 3 3003 3003 HOH HOH . GA 5 HOH A 4 3004 3004 HOH HOH . GA 5 HOH A 5 3005 3005 HOH HOH . GA 5 HOH A 6 3006 3006 HOH HOH . GA 5 HOH A 7 3007 3007 HOH HOH . GA 5 HOH A 8 3008 3008 HOH HOH . GA 5 HOH A 9 3009 3009 HOH HOH . GA 5 HOH A 10 3010 3010 HOH HOH . GA 5 HOH A 11 3011 3011 HOH HOH . GA 5 HOH A 12 3012 3012 HOH HOH . GA 5 HOH A 13 3013 3013 HOH HOH . GA 5 HOH A 14 3014 3014 HOH HOH . GA 5 HOH A 15 3015 3015 HOH HOH . GA 5 HOH A 16 3016 3016 HOH HOH . GA 5 HOH A 17 3017 3017 HOH HOH . GA 5 HOH A 18 3018 3018 HOH HOH . GA 5 HOH A 19 3019 3019 HOH HOH . GA 5 HOH A 20 3020 3020 HOH HOH . GA 5 HOH A 21 3021 3021 HOH HOH . GA 5 HOH A 22 3022 3022 HOH HOH . GA 5 HOH A 23 3023 3023 HOH HOH . GA 5 HOH A 24 3024 3024 HOH HOH . GA 5 HOH A 25 3025 3025 HOH HOH . GA 5 HOH A 26 3026 3026 HOH HOH . GA 5 HOH A 27 3027 3027 HOH HOH . GA 5 HOH A 28 3028 3028 HOH HOH . GA 5 HOH A 29 3029 3029 HOH HOH . GA 5 HOH A 30 3030 3030 HOH HOH . GA 5 HOH A 31 3031 3031 HOH HOH . GA 5 HOH A 32 3032 3032 HOH HOH . GA 5 HOH A 33 3033 3033 HOH HOH . GA 5 HOH A 34 3034 3034 HOH HOH . GA 5 HOH A 35 3035 3035 HOH HOH . GA 5 HOH A 36 3036 3036 HOH HOH . GA 5 HOH A 37 3037 3037 HOH HOH . GA 5 HOH A 38 3038 3038 HOH HOH . GA 5 HOH A 39 3039 3039 HOH HOH . GA 5 HOH A 40 3040 3040 HOH HOH . GA 5 HOH A 41 3041 3041 HOH HOH . GA 5 HOH A 42 3042 3042 HOH HOH . GA 5 HOH A 43 3043 3043 HOH HOH . GA 5 HOH A 44 3044 3044 HOH HOH . GA 5 HOH A 45 3045 3045 HOH HOH . GA 5 HOH A 46 3046 3046 HOH HOH . GA 5 HOH A 47 3047 3047 HOH HOH . GA 5 HOH A 48 3048 3048 HOH HOH . GA 5 HOH A 49 3049 3049 HOH HOH . GA 5 HOH A 50 3050 3050 HOH HOH . GA 5 HOH A 51 3051 3051 HOH HOH . GA 5 HOH A 52 3052 3052 HOH HOH . GA 5 HOH A 53 3053 3053 HOH HOH . GA 5 HOH A 54 3054 3054 HOH HOH . GA 5 HOH A 55 3055 3055 HOH HOH . GA 5 HOH A 56 3056 3056 HOH HOH . GA 5 HOH A 57 3057 3057 HOH HOH . GA 5 HOH A 58 3058 3058 HOH HOH . GA 5 HOH A 59 3059 3059 HOH HOH . GA 5 HOH A 60 3060 3060 HOH HOH . GA 5 HOH A 61 3061 3061 HOH HOH . GA 5 HOH A 62 3062 3062 HOH HOH . GA 5 HOH A 63 3063 3063 HOH HOH . GA 5 HOH A 64 3064 3064 HOH HOH . GA 5 HOH A 65 3065 3065 HOH HOH . GA 5 HOH A 66 3066 3066 HOH HOH . GA 5 HOH A 67 3067 3067 HOH HOH . GA 5 HOH A 68 3068 3068 HOH HOH . GA 5 HOH A 69 3069 3069 HOH HOH . GA 5 HOH A 70 3070 3070 HOH HOH . GA 5 HOH A 71 3071 3071 HOH HOH . GA 5 HOH A 72 3072 3072 HOH HOH . GA 5 HOH A 73 3073 3073 HOH HOH . GA 5 HOH A 74 3074 3074 HOH HOH . GA 5 HOH A 75 3075 3075 HOH HOH . GA 5 HOH A 76 3076 3076 HOH HOH . GA 5 HOH A 77 3077 3077 HOH HOH . GA 5 HOH A 78 3078 3078 HOH HOH . GA 5 HOH A 79 3079 3079 HOH HOH . HA 5 HOH B 1 3001 3001 HOH HOH . HA 5 HOH B 2 3002 3002 HOH HOH . HA 5 HOH B 3 3003 3003 HOH HOH . HA 5 HOH B 4 3004 3004 HOH HOH . HA 5 HOH B 5 3005 3005 HOH HOH . HA 5 HOH B 6 3006 3006 HOH HOH . HA 5 HOH B 7 3007 3007 HOH HOH . HA 5 HOH B 8 3008 3008 HOH HOH . HA 5 HOH B 9 3009 3009 HOH HOH . HA 5 HOH B 10 3010 3010 HOH HOH . HA 5 HOH B 11 3011 3011 HOH HOH . HA 5 HOH B 12 3012 3012 HOH HOH . HA 5 HOH B 13 3013 3013 HOH HOH . HA 5 HOH B 14 3014 3014 HOH HOH . HA 5 HOH B 15 3015 3015 HOH HOH . HA 5 HOH B 16 3016 3016 HOH HOH . HA 5 HOH B 17 3017 3017 HOH HOH . HA 5 HOH B 18 3018 3018 HOH HOH . HA 5 HOH B 19 3019 3019 HOH HOH . HA 5 HOH B 20 3020 3020 HOH HOH . HA 5 HOH B 21 3021 3021 HOH HOH . HA 5 HOH B 22 3022 3022 HOH HOH . HA 5 HOH B 23 3023 3023 HOH HOH . HA 5 HOH B 24 3024 3024 HOH HOH . HA 5 HOH B 25 3025 3025 HOH HOH . HA 5 HOH B 26 3026 3026 HOH HOH . HA 5 HOH B 27 3027 3027 HOH HOH . HA 5 HOH B 28 3028 3028 HOH HOH . HA 5 HOH B 29 3029 3029 HOH HOH . HA 5 HOH B 30 3030 3030 HOH HOH . HA 5 HOH B 31 3031 3031 HOH HOH . HA 5 HOH B 32 3032 3032 HOH HOH . HA 5 HOH B 33 3033 3033 HOH HOH . HA 5 HOH B 34 3034 3034 HOH HOH . HA 5 HOH B 35 3035 3035 HOH HOH . HA 5 HOH B 36 3036 3036 HOH HOH . HA 5 HOH B 37 3037 3037 HOH HOH . HA 5 HOH B 38 3038 3038 HOH HOH . HA 5 HOH B 39 3039 3039 HOH HOH . HA 5 HOH B 40 3040 3040 HOH HOH . HA 5 HOH B 41 3041 3041 HOH HOH . HA 5 HOH B 42 3042 3042 HOH HOH . HA 5 HOH B 43 3043 3043 HOH HOH . HA 5 HOH B 44 3044 3044 HOH HOH . HA 5 HOH B 45 3045 3045 HOH HOH . HA 5 HOH B 46 3046 3046 HOH HOH . HA 5 HOH B 47 3047 3047 HOH HOH . HA 5 HOH B 48 3048 3048 HOH HOH . HA 5 HOH B 49 3049 3049 HOH HOH . HA 5 HOH B 50 3050 3050 HOH HOH . HA 5 HOH B 51 3051 3051 HOH HOH . HA 5 HOH B 52 3052 3052 HOH HOH . HA 5 HOH B 53 3053 3053 HOH HOH . HA 5 HOH B 54 3054 3054 HOH HOH . HA 5 HOH B 55 3055 3055 HOH HOH . HA 5 HOH B 56 3056 3056 HOH HOH . HA 5 HOH B 57 3057 3057 HOH HOH . HA 5 HOH B 58 3058 3058 HOH HOH . HA 5 HOH B 59 3059 3059 HOH HOH . HA 5 HOH B 60 3060 3060 HOH HOH . HA 5 HOH B 61 3061 3061 HOH HOH . HA 5 HOH B 62 3062 3062 HOH HOH . HA 5 HOH B 63 3063 3063 HOH HOH . HA 5 HOH B 64 3064 3064 HOH HOH . HA 5 HOH B 65 3065 3065 HOH HOH . HA 5 HOH B 66 3066 3066 HOH HOH . HA 5 HOH B 67 3067 3067 HOH HOH . HA 5 HOH B 68 3068 3068 HOH HOH . HA 5 HOH B 69 3069 3069 HOH HOH . HA 5 HOH B 70 3070 3070 HOH HOH . HA 5 HOH B 71 3071 3071 HOH HOH . HA 5 HOH B 72 3072 3072 HOH HOH . HA 5 HOH B 73 3073 3073 HOH HOH . HA 5 HOH B 74 3074 3074 HOH HOH . HA 5 HOH B 75 3075 3075 HOH HOH . IA 5 HOH C 1 3001 3001 HOH HOH . IA 5 HOH C 2 3002 3002 HOH HOH . IA 5 HOH C 3 3003 3003 HOH HOH . IA 5 HOH C 4 3004 3004 HOH HOH . IA 5 HOH C 5 3005 3005 HOH HOH . IA 5 HOH C 6 3006 3006 HOH HOH . IA 5 HOH C 7 3007 3007 HOH HOH . IA 5 HOH C 8 3008 3008 HOH HOH . IA 5 HOH C 9 3009 3009 HOH HOH . IA 5 HOH C 10 3010 3010 HOH HOH . IA 5 HOH C 11 3011 3011 HOH HOH . IA 5 HOH C 12 3012 3012 HOH HOH . IA 5 HOH C 13 3013 3013 HOH HOH . IA 5 HOH C 14 3014 3014 HOH HOH . IA 5 HOH C 15 3015 3015 HOH HOH . IA 5 HOH C 16 3016 3016 HOH HOH . IA 5 HOH C 17 3017 3017 HOH HOH . IA 5 HOH C 18 3018 3018 HOH HOH . IA 5 HOH C 19 3019 3019 HOH HOH . IA 5 HOH C 20 3020 3020 HOH HOH . IA 5 HOH C 21 3021 3021 HOH HOH . IA 5 HOH C 22 3022 3022 HOH HOH . IA 5 HOH C 23 3023 3023 HOH HOH . IA 5 HOH C 24 3024 3024 HOH HOH . IA 5 HOH C 25 3025 3025 HOH HOH . IA 5 HOH C 26 3026 3026 HOH HOH . IA 5 HOH C 27 3027 3027 HOH HOH . IA 5 HOH C 28 3028 3028 HOH HOH . IA 5 HOH C 29 3029 3029 HOH HOH . IA 5 HOH C 30 3030 3030 HOH HOH . IA 5 HOH C 31 3031 3031 HOH HOH . IA 5 HOH C 32 3032 3032 HOH HOH . IA 5 HOH C 33 3033 3033 HOH HOH . IA 5 HOH C 34 3034 3034 HOH HOH . IA 5 HOH C 35 3035 3035 HOH HOH . IA 5 HOH C 36 3036 3036 HOH HOH . IA 5 HOH C 37 3037 3037 HOH HOH . IA 5 HOH C 38 3038 3038 HOH HOH . IA 5 HOH C 39 3039 3039 HOH HOH . IA 5 HOH C 40 3040 3040 HOH HOH . IA 5 HOH C 41 3041 3041 HOH HOH . IA 5 HOH C 42 3042 3042 HOH HOH . IA 5 HOH C 43 3043 3043 HOH HOH . IA 5 HOH C 44 3044 3044 HOH HOH . IA 5 HOH C 45 3045 3045 HOH HOH . IA 5 HOH C 46 3046 3046 HOH HOH . IA 5 HOH C 47 3047 3047 HOH HOH . IA 5 HOH C 48 3048 3048 HOH HOH . IA 5 HOH C 49 3049 3049 HOH HOH . IA 5 HOH C 50 3050 3050 HOH HOH . IA 5 HOH C 51 3051 3051 HOH HOH . IA 5 HOH C 52 3052 3052 HOH HOH . IA 5 HOH C 53 3053 3053 HOH HOH . IA 5 HOH C 54 3054 3054 HOH HOH . IA 5 HOH C 55 3055 3055 HOH HOH . IA 5 HOH C 56 3056 3056 HOH HOH . IA 5 HOH C 57 3057 3057 HOH HOH . IA 5 HOH C 58 3058 3058 HOH HOH . IA 5 HOH C 59 3059 3059 HOH HOH . IA 5 HOH C 60 3060 3060 HOH HOH . IA 5 HOH C 61 3061 3061 HOH HOH . IA 5 HOH C 62 3062 3062 HOH HOH . IA 5 HOH C 63 3063 3063 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MMC . . . R 3 49.229 12.365 118.056 1 98.74 ? HG MMC 1377 B 1 HETATM 2 C C MMC . . . R 3 48.345 14.084 116.799 1 82.49 ? C MMC 1377 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 1266 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 2 #