data_5G5X # _model_server_result.job_id mZYOJ-mhN4rnHS_aKiNdzg _model_server_result.datetime_utc '2024-11-05 00:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1354}' # _entry.id 5G5X # _exptl.entry_id 5G5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5G5X _cell.length_a 70.91 _cell.length_b 70.91 _cell.length_c 201.44 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 95 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 95 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.025 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5G5X _atom_sites.fract_transf_matrix[1][1] 0.014102 _atom_sites.fract_transf_matrix[1][2] 0.008142 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AMP A 1 1354 1354 AMP AMP . D 4 ATP A 1 1355 1355 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 -11.88 -5.326 -2.23 1 97.87 ? P AMP 1354 A 1 HETATM 2 O O1P AMP . . . C 3 -10.879 -5.077 -1.127 1 99.99 ? O1P AMP 1354 A 1 HETATM 3 O O2P AMP . . . C 3 -11.899 -4.266 -3.305 1 97.8 ? O2P AMP 1354 A 1 HETATM 4 O O3P AMP . . . C 3 -11.894 -6.743 -2.751 1 99.96 ? O3P AMP 1354 A 1 HETATM 5 O O5' AMP . . . C 3 -13.307 -5.166 -1.503 1 91.66 ? O5' AMP 1354 A 1 HETATM 6 C C5' AMP . . . C 3 -13.744 -3.89 -1.037 1 88.57 ? C5' AMP 1354 A 1 HETATM 7 C C4' AMP . . . C 3 -14.685 -4.076 0.146 1 84.2 ? C4' AMP 1354 A 1 HETATM 8 O O4' AMP . . . C 3 -15.911 -4.662 -0.299 1 80.24 ? O4' AMP 1354 A 1 HETATM 9 C C3' AMP . . . C 3 -14.08 -5 1.191 1 83.69 ? C3' AMP 1354 A 1 HETATM 10 O O3' AMP . . . C 3 -13.965 -4.316 2.442 1 82.05 ? O3' AMP 1354 A 1 HETATM 11 C C2' AMP . . . C 3 -15.033 -6.171 1.326 1 82.6 ? C2' AMP 1354 A 1 HETATM 12 O O2' AMP . . . C 3 -15.534 -6.244 2.663 1 83.75 ? O2' AMP 1354 A 1 HETATM 13 C C1' AMP . . . C 3 -16.174 -5.905 0.356 1 78.95 ? C1' AMP 1354 A 1 HETATM 14 N N9 AMP . . . C 3 -16.24 -6.996 -0.649 1 77 ? N9 AMP 1354 A 1 HETATM 15 C C8 AMP . . . C 3 -15.184 -7.598 -1.227 1 78.62 ? C8 AMP 1354 A 1 HETATM 16 N N7 AMP . . . C 3 -15.585 -8.556 -2.102 1 78.39 ? N7 AMP 1354 A 1 HETATM 17 C C5 AMP . . . C 3 -16.93 -8.575 -2.091 1 75.41 ? C5 AMP 1354 A 1 HETATM 18 C C6 AMP . . . C 3 -17.993 -9.346 -2.779 1 73.73 ? C6 AMP 1354 A 1 HETATM 19 N N6 AMP . . . C 3 -17.687 -10.313 -3.678 1 74.67 ? N6 AMP 1354 A 1 HETATM 20 N N1 AMP . . . C 3 -19.278 -9.051 -2.48 1 71.09 ? N1 AMP 1354 A 1 HETATM 21 C C2 AMP . . . C 3 -19.595 -8.093 -1.589 1 69.97 ? C2 AMP 1354 A 1 HETATM 22 N N3 AMP . . . C 3 -18.683 -7.356 -0.929 1 71.34 ? N3 AMP 1354 A 1 HETATM 23 C C4 AMP . . . C 3 -17.357 -7.545 -1.132 1 74.33 ? C4 AMP 1354 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #