data_5G67 # _model_server_result.job_id jHJpruacMDrowTixToNIow _model_server_result.datetime_utc '2024-11-22 00:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1365}' # _entry.id 5G67 # _exptl.entry_id 5G67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G67 _cell.length_a 80.68 _cell.length_b 95.47 _cell.length_c 62.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 1364 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.564 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 142 n y N1 C8A H4B sing 143 n y C2 N2 H4B sing 144 n n C2 N3 H4B sing 145 n y N2 HN21 H4B sing 146 n n N2 HN22 H4B sing 147 n n N3 C4 H4B sing 148 n y N3 HN3 H4B sing 149 n n C4 O4 H4B doub 150 n n C4 C4A H4B sing 151 n y C4A C8A H4B doub 152 n y C4A N5 H4B sing 153 n n C8A N8 H4B sing 154 n n N5 C6 H4B sing 155 n n N5 HN5 H4B sing 156 n n N8 C7 H4B sing 157 n n N8 HN8 H4B sing 158 n n C6 C7 H4B sing 159 n n C6 C9 H4B sing 160 n n C6 H6 H4B sing 161 n n C7 H71 H4B sing 162 n n C7 H72 H4B sing 163 n n C9 O9 H4B sing 164 n n C9 C10 H4B sing 165 n n C9 H9 H4B sing 166 n n O9 HO9 H4B sing 167 n n C10 C11 H4B sing 168 n n C10 O10 H4B sing 169 n n C10 H10 H4B sing 170 n n C11 H111 H4B sing 171 n n C11 H112 H4B sing 172 n n C11 H113 H4B sing 173 n n O10 HO0 H4B sing 174 n n # _atom_sites.entry_id 5G67 _atom_sites.fract_transf_matrix[1][1] 0.012395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 1364 1364 HEM HEM . C 3 H4B A 1 1365 1365 H4B H4B . D 4 CL A 1 1366 1366 CL CL . E 5 M87 A 1 1367 1367 M87 M87 . F 6 GOL A 1 1368 1368 GOL GOL . G 6 GOL A 1 1369 1369 GOL GOL . H 7 PEG A 1 1370 1370 PEG PEG . I 8 POL A 1 1371 1371 POL POL . J 9 HOH A 1 2001 2001 HOH HOH . J 9 HOH A 2 2002 2002 HOH HOH . J 9 HOH A 3 2003 2003 HOH HOH . J 9 HOH A 4 2004 2004 HOH HOH . J 9 HOH A 5 2005 2005 HOH HOH . J 9 HOH A 6 2006 2006 HOH HOH . J 9 HOH A 7 2007 2007 HOH HOH . J 9 HOH A 8 2008 2008 HOH HOH . J 9 HOH A 9 2009 2009 HOH HOH . J 9 HOH A 10 2010 2010 HOH HOH . J 9 HOH A 11 2011 2011 HOH HOH . J 9 HOH A 12 2012 2012 HOH HOH . J 9 HOH A 13 2013 2013 HOH HOH . J 9 HOH A 14 2014 2014 HOH HOH . J 9 HOH A 15 2015 2015 HOH HOH . J 9 HOH A 16 2016 2016 HOH HOH . J 9 HOH A 17 2017 2017 HOH HOH . J 9 HOH A 18 2018 2018 HOH HOH . J 9 HOH A 19 2019 2019 HOH HOH . J 9 HOH A 20 2020 2020 HOH HOH . J 9 HOH A 21 2021 2021 HOH HOH . J 9 HOH A 22 2022 2022 HOH HOH . J 9 HOH A 23 2023 2023 HOH HOH . J 9 HOH A 24 2024 2024 HOH HOH . J 9 HOH A 25 2025 2025 HOH HOH . J 9 HOH A 26 2026 2026 HOH HOH . J 9 HOH A 27 2027 2027 HOH HOH . J 9 HOH A 28 2028 2028 HOH HOH . J 9 HOH A 29 2029 2029 HOH HOH . J 9 HOH A 30 2030 2030 HOH HOH . J 9 HOH A 31 2031 2031 HOH HOH . J 9 HOH A 32 2032 2032 HOH HOH . J 9 HOH A 33 2033 2033 HOH HOH . J 9 HOH A 34 2034 2034 HOH HOH . J 9 HOH A 35 2035 2035 HOH HOH . J 9 HOH A 36 2036 2036 HOH HOH . J 9 HOH A 37 2037 2037 HOH HOH . J 9 HOH A 38 2038 2038 HOH HOH . J 9 HOH A 39 2039 2039 HOH HOH . J 9 HOH A 40 2040 2040 HOH HOH . J 9 HOH A 41 2041 2041 HOH HOH . J 9 HOH A 42 2042 2042 HOH HOH . J 9 HOH A 43 2043 2043 HOH HOH . J 9 HOH A 44 2044 2044 HOH HOH . J 9 HOH A 45 2045 2045 HOH HOH . J 9 HOH A 46 2046 2046 HOH HOH . J 9 HOH A 47 2047 2047 HOH HOH . J 9 HOH A 48 2048 2048 HOH HOH . J 9 HOH A 49 2049 2049 HOH HOH . J 9 HOH A 50 2050 2050 HOH HOH . J 9 HOH A 51 2051 2051 HOH HOH . J 9 HOH A 52 2052 2052 HOH HOH . J 9 HOH A 53 2053 2053 HOH HOH . J 9 HOH A 54 2054 2054 HOH HOH . J 9 HOH A 55 2055 2055 HOH HOH . J 9 HOH A 56 2056 2056 HOH HOH . J 9 HOH A 57 2057 2057 HOH HOH . J 9 HOH A 58 2058 2058 HOH HOH . J 9 HOH A 59 2059 2059 HOH HOH . J 9 HOH A 60 2060 2060 HOH HOH . J 9 HOH A 61 2061 2061 HOH HOH . J 9 HOH A 62 2062 2062 HOH HOH . J 9 HOH A 63 2063 2063 HOH HOH . J 9 HOH A 64 2064 2064 HOH HOH . J 9 HOH A 65 2065 2065 HOH HOH . J 9 HOH A 66 2066 2066 HOH HOH . J 9 HOH A 67 2067 2067 HOH HOH . J 9 HOH A 68 2068 2068 HOH HOH . J 9 HOH A 69 2069 2069 HOH HOH . J 9 HOH A 70 2070 2070 HOH HOH . J 9 HOH A 71 2071 2071 HOH HOH . J 9 HOH A 72 2072 2072 HOH HOH . J 9 HOH A 73 2073 2073 HOH HOH . J 9 HOH A 74 2074 2074 HOH HOH . J 9 HOH A 75 2075 2075 HOH HOH . J 9 HOH A 76 2076 2076 HOH HOH . J 9 HOH A 77 2077 2077 HOH HOH . J 9 HOH A 78 2078 2078 HOH HOH . J 9 HOH A 79 2079 2079 HOH HOH . J 9 HOH A 80 2080 2080 HOH HOH . J 9 HOH A 81 2081 2081 HOH HOH . J 9 HOH A 82 2082 2082 HOH HOH . J 9 HOH A 83 2083 2083 HOH HOH . J 9 HOH A 84 2084 2084 HOH HOH . J 9 HOH A 85 2085 2085 HOH HOH . J 9 HOH A 86 2086 2086 HOH HOH . J 9 HOH A 87 2087 2087 HOH HOH . J 9 HOH A 88 2088 2088 HOH HOH . J 9 HOH A 89 2089 2089 HOH HOH . J 9 HOH A 90 2090 2090 HOH HOH . J 9 HOH A 91 2091 2091 HOH HOH . J 9 HOH A 92 2092 2092 HOH HOH . J 9 HOH A 93 2093 2093 HOH HOH . J 9 HOH A 94 2094 2094 HOH HOH . J 9 HOH A 95 2095 2095 HOH HOH . J 9 HOH A 96 2096 2096 HOH HOH . J 9 HOH A 97 2097 2097 HOH HOH . J 9 HOH A 98 2098 2098 HOH HOH . J 9 HOH A 99 2099 2099 HOH HOH . J 9 HOH A 100 2100 2100 HOH HOH . J 9 HOH A 101 2101 2101 HOH HOH . J 9 HOH A 102 2102 2102 HOH HOH . J 9 HOH A 103 2103 2103 HOH HOH . J 9 HOH A 104 2104 2104 HOH HOH . J 9 HOH A 105 2105 2105 HOH HOH . J 9 HOH A 106 2106 2106 HOH HOH . J 9 HOH A 107 2107 2107 HOH HOH . J 9 HOH A 108 2108 2108 HOH HOH . J 9 HOH A 109 2109 2109 HOH HOH . J 9 HOH A 110 2110 2110 HOH HOH . J 9 HOH A 111 2111 2111 HOH HOH . J 9 HOH A 112 2112 2112 HOH HOH . J 9 HOH A 113 2113 2113 HOH HOH . J 9 HOH A 114 2114 2114 HOH HOH . J 9 HOH A 115 2115 2115 HOH HOH . J 9 HOH A 116 2116 2116 HOH HOH . J 9 HOH A 117 2117 2117 HOH HOH . J 9 HOH A 118 2118 2118 HOH HOH . J 9 HOH A 119 2119 2119 HOH HOH . J 9 HOH A 120 2120 2120 HOH HOH . J 9 HOH A 121 2121 2121 HOH HOH . J 9 HOH A 122 2122 2122 HOH HOH . J 9 HOH A 123 2123 2123 HOH HOH . J 9 HOH A 124 2124 2124 HOH HOH . J 9 HOH A 125 2125 2125 HOH HOH . J 9 HOH A 126 2126 2126 HOH HOH . J 9 HOH A 127 2127 2127 HOH HOH . J 9 HOH A 128 2128 2128 HOH HOH . J 9 HOH A 129 2129 2129 HOH HOH . J 9 HOH A 130 2130 2130 HOH HOH . J 9 HOH A 131 2131 2131 HOH HOH . J 9 HOH A 132 2132 2132 HOH HOH . J 9 HOH A 133 2133 2133 HOH HOH . J 9 HOH A 134 2134 2134 HOH HOH . J 9 HOH A 135 2135 2135 HOH HOH . J 9 HOH A 136 2136 2136 HOH HOH . J 9 HOH A 137 2137 2137 HOH HOH . J 9 HOH A 138 2138 2138 HOH HOH . J 9 HOH A 139 2139 2139 HOH HOH . J 9 HOH A 140 2140 2140 HOH HOH . J 9 HOH A 141 2141 2141 HOH HOH . J 9 HOH A 142 2142 2142 HOH HOH . J 9 HOH A 143 2143 2143 HOH HOH . J 9 HOH A 144 2144 2144 HOH HOH . J 9 HOH A 145 2145 2145 HOH HOH . J 9 HOH A 146 2146 2146 HOH HOH . J 9 HOH A 147 2147 2147 HOH HOH . J 9 HOH A 148 2148 2148 HOH HOH . J 9 HOH A 149 2149 2149 HOH HOH . J 9 HOH A 150 2150 2150 HOH HOH . J 9 HOH A 151 2151 2151 HOH HOH . J 9 HOH A 152 2152 2152 HOH HOH . J 9 HOH A 153 2153 2153 HOH HOH . J 9 HOH A 154 2154 2154 HOH HOH . J 9 HOH A 155 2155 2155 HOH HOH . J 9 HOH A 156 2156 2156 HOH HOH . J 9 HOH A 157 2157 2157 HOH HOH . J 9 HOH A 158 2158 2158 HOH HOH . J 9 HOH A 159 2159 2159 HOH HOH . J 9 HOH A 160 2160 2160 HOH HOH . J 9 HOH A 161 2161 2161 HOH HOH . J 9 HOH A 162 2162 2162 HOH HOH . J 9 HOH A 163 2163 2163 HOH HOH . J 9 HOH A 164 2164 2164 HOH HOH . J 9 HOH A 165 2165 2165 HOH HOH . J 9 HOH A 166 2166 2166 HOH HOH . J 9 HOH A 167 2167 2167 HOH HOH . J 9 HOH A 168 2168 2168 HOH HOH . J 9 HOH A 169 2169 2169 HOH HOH . J 9 HOH A 170 2170 2170 HOH HOH . J 9 HOH A 171 2171 2171 HOH HOH . J 9 HOH A 172 2172 2172 HOH HOH . J 9 HOH A 173 2173 2173 HOH HOH . J 9 HOH A 174 2174 2174 HOH HOH . J 9 HOH A 175 2175 2175 HOH HOH . J 9 HOH A 176 2176 2176 HOH HOH . J 9 HOH A 177 2177 2177 HOH HOH . J 9 HOH A 178 2178 2178 HOH HOH . J 9 HOH A 179 2179 2179 HOH HOH . J 9 HOH A 180 2180 2180 HOH HOH . J 9 HOH A 181 2181 2181 HOH HOH . J 9 HOH A 182 2182 2182 HOH HOH . J 9 HOH A 183 2183 2183 HOH HOH . J 9 HOH A 184 2184 2184 HOH HOH . J 9 HOH A 185 2185 2185 HOH HOH . J 9 HOH A 186 2186 2186 HOH HOH . J 9 HOH A 187 2187 2187 HOH HOH . J 9 HOH A 188 2188 2188 HOH HOH . J 9 HOH A 189 2189 2189 HOH HOH . J 9 HOH A 190 2190 2190 HOH HOH . J 9 HOH A 191 2191 2191 HOH HOH . J 9 HOH A 192 2192 2192 HOH HOH . J 9 HOH A 193 2193 2193 HOH HOH . J 9 HOH A 194 2194 2194 HOH HOH . J 9 HOH A 195 2195 2195 HOH HOH . J 9 HOH A 196 2196 2196 HOH HOH . J 9 HOH A 197 2197 2197 HOH HOH . J 9 HOH A 198 2198 2198 HOH HOH . J 9 HOH A 199 2199 2199 HOH HOH . J 9 HOH A 200 2200 2200 HOH HOH . J 9 HOH A 201 2201 2201 HOH HOH . J 9 HOH A 202 2202 2202 HOH HOH . J 9 HOH A 203 2203 2203 HOH HOH . J 9 HOH A 204 2204 2204 HOH HOH . J 9 HOH A 205 2205 2205 HOH HOH . J 9 HOH A 206 2206 2206 HOH HOH . J 9 HOH A 207 2207 2207 HOH HOH . J 9 HOH A 208 2208 2208 HOH HOH . J 9 HOH A 209 2209 2209 HOH HOH . J 9 HOH A 210 2210 2210 HOH HOH . J 9 HOH A 211 2211 2211 HOH HOH . J 9 HOH A 212 2212 2212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . C 3 3.711 6.829 22.679 1 23.33 ? N1 H4B 1365 A 1 HETATM 2 C C2 H4B . . . C 3 3.991 8.031 23.254 1 21.48 ? C2 H4B 1365 A 1 HETATM 3 N N2 H4B . . . C 3 2.961 8.825 23.695 1 17.34 ? N2 H4B 1365 A 1 HETATM 4 N N3 H4B . . . C 3 5.268 8.463 23.38 1 22.52 ? N3 H4B 1365 A 1 HETATM 5 C C4 H4B . . . C 3 6.34 7.754 22.981 1 20.12 ? C4 H4B 1365 A 1 HETATM 6 O O4 H4B . . . C 3 7.503 8.204 23.136 1 19.18 ? O4 H4B 1365 A 1 HETATM 7 C C4A H4B . . . C 3 6.098 6.439 22.348 1 22.38 ? C4A H4B 1365 A 1 HETATM 8 C C8A H4B . . . C 3 4.689 6.009 22.228 1 22.85 ? C8A H4B 1365 A 1 HETATM 9 N N5 H4B . . . C 3 7.087 5.636 21.901 1 26.24 ? N5 H4B 1365 A 1 HETATM 10 N N8 H4B . . . C 3 4.404 4.818 21.654 1 26.35 ? N8 H4B 1365 A 1 HETATM 11 C C6 H4B . . . C 3 6.773 4.631 20.9 1 31.9 ? C6 H4B 1365 A 1 HETATM 12 C C7 H4B . . . C 3 5.479 3.912 21.274 1 27.85 ? C7 H4B 1365 A 1 HETATM 13 C C9 H4B . . . C 3 7.9 3.6 20.707 1 47.2 ? C9 H4B 1365 A 1 HETATM 14 O O9 H4B . . . C 3 7.558 2.666 19.658 1 49.81 ? O9 H4B 1365 A 1 HETATM 15 C C10 H4B . . . C 3 9.307 4.162 20.424 1 56.98 ? C10 H4B 1365 A 1 HETATM 16 C C11 H4B . . . C 3 10.052 4.617 21.688 1 59.78 ? C11 H4B 1365 A 1 HETATM 17 O O10 H4B . . . C 3 9.244 5.225 19.46 1 58.63 ? O10 H4B 1365 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #