data_5G6L # _model_server_result.job_id vBvAo5ucZuFKT8l5OBE4Sw _model_server_result.datetime_utc '2024-10-13 05:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5G6L # _exptl.entry_id 5G6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G6L _cell.length_a 80.71 _cell.length_b 94.39 _cell.length_c 61.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.7 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 175 n n CHA C4D HEM doub 176 n n CHA HHA HEM sing 177 n n CHB C4A HEM sing 178 n n CHB C1B HEM doub 179 n n CHB HHB HEM sing 180 n n CHC C4B HEM sing 181 n n CHC C1C HEM doub 182 n n CHC HHC HEM sing 183 n n CHD C4C HEM doub 184 n n CHD C1D HEM sing 185 n n CHD HHD HEM sing 186 n n C1A C2A HEM doub 187 n y C1A NA HEM sing 188 n y C2A C3A HEM sing 189 n y C2A CAA HEM sing 190 n n C3A C4A HEM doub 191 n y C3A CMA HEM sing 192 n n C4A NA HEM sing 193 n y CMA HMA HEM sing 194 n n CMA HMAA HEM sing 195 n n CMA HMAB HEM sing 196 n n CAA CBA HEM sing 197 n n CAA HAA HEM sing 198 n n CAA HAAA HEM sing 199 n n CBA CGA HEM sing 200 n n CBA HBA HEM sing 201 n n CBA HBAA HEM sing 202 n n CGA O1A HEM doub 203 n n CGA O2A HEM sing 204 n n C1B C2B HEM sing 205 n n C1B NB HEM sing 206 n n C2B C3B HEM doub 207 n n C2B CMB HEM sing 208 n n C3B C4B HEM sing 209 n n C3B CAB HEM sing 210 n n C4B NB HEM doub 211 n n CMB HMB HEM sing 212 n n CMB HMBA HEM sing 213 n n CMB HMBB HEM sing 214 n n CAB CBB HEM doub 215 n n CAB HAB HEM sing 216 n n CBB HBB HEM sing 217 n n CBB HBBA HEM sing 218 n n C1C C2C HEM sing 219 n y C1C NC HEM sing 220 n y C2C C3C HEM doub 221 n y C2C CMC HEM sing 222 n n C3C C4C HEM sing 223 n y C3C CAC HEM sing 224 n n C4C NC HEM sing 225 n y CMC HMC HEM sing 226 n n CMC HMCA HEM sing 227 n n CMC HMCB HEM sing 228 n n CAC CBC HEM doub 229 n n CAC HAC HEM sing 230 n n CBC HBC HEM sing 231 n n CBC HBCA HEM sing 232 n n C1D C2D HEM sing 233 n n C1D ND HEM doub 234 n n C2D C3D HEM doub 235 n n C2D CMD HEM sing 236 n n C3D C4D HEM sing 237 n n C3D CAD HEM sing 238 n n C4D ND HEM sing 239 n n CMD HMD HEM sing 240 n n CMD HMDA HEM sing 241 n n CMD HMDB HEM sing 242 n n CAD CBD HEM sing 243 n n CAD HAD HEM sing 244 n n CAD HADA HEM sing 245 n n CBD CGD HEM sing 246 n n CBD HBD HEM sing 247 n n CBD HBDA HEM sing 248 n n CGD O1D HEM doub 249 n n CGD O2D HEM sing 250 n n O2A H2A HEM sing 251 n n O2D H2D HEM sing 252 n n FE NA HEM sing 253 n n FE NB HEM sing 254 n n FE NC HEM sing 255 n n FE ND HEM sing 256 n n # _atom_sites.entry_id 5G6L _atom_sites.fract_transf_matrix[1][1] 0.01239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 H4B A 1 902 902 H4B H4B . D 4 CL A 1 903 903 CL CL . E 5 XEB A 1 904 904 XEB XEB . F 6 GOL A 1 905 905 GOL GOL . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . G 7 HOH A 13 2013 2013 HOH HOH . G 7 HOH A 14 2014 2014 HOH HOH . G 7 HOH A 15 2015 2015 HOH HOH . G 7 HOH A 16 2016 2016 HOH HOH . G 7 HOH A 17 2017 2017 HOH HOH . G 7 HOH A 18 2018 2018 HOH HOH . G 7 HOH A 19 2019 2019 HOH HOH . G 7 HOH A 20 2020 2020 HOH HOH . G 7 HOH A 21 2021 2021 HOH HOH . G 7 HOH A 22 2022 2022 HOH HOH . G 7 HOH A 23 2023 2023 HOH HOH . G 7 HOH A 24 2024 2024 HOH HOH . G 7 HOH A 25 2025 2025 HOH HOH . G 7 HOH A 26 2026 2026 HOH HOH . G 7 HOH A 27 2027 2027 HOH HOH . G 7 HOH A 28 2028 2028 HOH HOH . G 7 HOH A 29 2029 2029 HOH HOH . G 7 HOH A 30 2030 2030 HOH HOH . G 7 HOH A 31 2031 2031 HOH HOH . G 7 HOH A 32 2032 2032 HOH HOH . G 7 HOH A 33 2033 2033 HOH HOH . G 7 HOH A 34 2034 2034 HOH HOH . G 7 HOH A 35 2035 2035 HOH HOH . G 7 HOH A 36 2036 2036 HOH HOH . G 7 HOH A 37 2037 2037 HOH HOH . G 7 HOH A 38 2038 2038 HOH HOH . G 7 HOH A 39 2039 2039 HOH HOH . G 7 HOH A 40 2040 2040 HOH HOH . G 7 HOH A 41 2041 2041 HOH HOH . G 7 HOH A 42 2042 2042 HOH HOH . G 7 HOH A 43 2043 2043 HOH HOH . G 7 HOH A 44 2044 2044 HOH HOH . G 7 HOH A 45 2045 2045 HOH HOH . G 7 HOH A 46 2046 2046 HOH HOH . G 7 HOH A 47 2047 2047 HOH HOH . G 7 HOH A 48 2048 2048 HOH HOH . G 7 HOH A 49 2049 2049 HOH HOH . G 7 HOH A 50 2050 2050 HOH HOH . G 7 HOH A 51 2051 2051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 1.723 14.527 20.378 1 23.53 ? CHA HEM 901 A 1 HETATM 2 C CHB HEM . . . B 2 -0.866 15.491 24.361 1 25.86 ? CHB HEM 901 A 1 HETATM 3 C CHC HEM . . . B 2 -1.501 20.063 22.792 1 17.01 ? CHC HEM 901 A 1 HETATM 4 C CHD HEM . . . B 2 0.606 18.901 18.594 1 27.81 ? CHD HEM 901 A 1 HETATM 5 C C1A HEM . . . B 2 1.158 14.507 21.624 1 25.18 ? C1A HEM 901 A 1 HETATM 6 C C2A HEM . . . B 2 1.478 13.521 22.578 1 23.29 ? C2A HEM 901 A 1 HETATM 7 C C3A HEM . . . B 2 0.758 13.787 23.686 1 23.26 ? C3A HEM 901 A 1 HETATM 8 C C4A HEM . . . B 2 -0.018 14.932 23.434 1 24.26 ? C4A HEM 901 A 1 HETATM 9 C CMA HEM . . . B 2 0.784 12.986 24.958 1 17.09 ? CMA HEM 901 A 1 HETATM 10 C CAA HEM . . . B 2 2.439 12.371 22.425 1 23.31 ? CAA HEM 901 A 1 HETATM 11 C CBA HEM . . . B 2 3.843 12.849 22.812 1 29.48 ? CBA HEM 901 A 1 HETATM 12 C CGA HEM . . . B 2 4.806 11.697 22.943 1 37.57 ? CGA HEM 901 A 1 HETATM 13 O O1A HEM . . . B 2 4.377 10.536 23.124 1 38.98 ? O1A HEM 901 A 1 HETATM 14 O O2A HEM . . . B 2 6.041 11.903 22.885 1 38.15 ? O2A HEM 901 A 1 HETATM 15 C C1B HEM . . . B 2 -1.203 16.84 24.267 1 24.13 ? C1B HEM 901 A 1 HETATM 16 C C2B HEM . . . B 2 -1.814 17.545 25.344 1 20.39 ? C2B HEM 901 A 1 HETATM 17 C C3B HEM . . . B 2 -2.01 18.83 24.942 1 21.51 ? C3B HEM 901 A 1 HETATM 18 C C4B HEM . . . B 2 -1.485 18.886 23.548 1 22.32 ? C4B HEM 901 A 1 HETATM 19 C CMB HEM . . . B 2 -2.184 16.983 26.69 1 17.63 ? CMB HEM 901 A 1 HETATM 20 C CAB HEM . . . B 2 -2.619 19.901 25.769 1 18.51 ? CAB HEM 901 A 1 HETATM 21 C CBB HEM . . . B 2 -3.31 20.934 25.28 1 12.49 ? CBB HEM 901 A 1 HETATM 22 C C1C HEM . . . B 2 -0.922 20.187 21.537 1 19.07 ? C1C HEM 901 A 1 HETATM 23 C C2C HEM . . . B 2 -0.714 21.382 20.831 1 20.5 ? C2C HEM 901 A 1 HETATM 24 C C3C HEM . . . B 2 -0.116 21.059 19.619 1 24.22 ? C3C HEM 901 A 1 HETATM 25 C C4C HEM . . . B 2 0.045 19.642 19.605 1 25.35 ? C4C HEM 901 A 1 HETATM 26 C CMC HEM . . . B 2 -1.085 22.764 21.307 1 21.72 ? CMC HEM 901 A 1 HETATM 27 C CAC HEM . . . B 2 0.29 22.002 18.554 1 24.91 ? CAC HEM 901 A 1 HETATM 28 C CBC HEM . . . B 2 -0.523 22.927 18.043 1 18.53 ? CBC HEM 901 A 1 HETATM 29 C C1D HEM . . . B 2 1.107 17.612 18.814 1 24.72 ? C1D HEM 901 A 1 HETATM 30 C C2D HEM . . . B 2 1.993 16.977 17.828 1 21.22 ? C2D HEM 901 A 1 HETATM 31 C C3D HEM . . . B 2 2.305 15.775 18.319 1 21.68 ? C3D HEM 901 A 1 HETATM 32 C C4D HEM . . . B 2 1.61 15.664 19.607 1 23.12 ? C4D HEM 901 A 1 HETATM 33 C CMD HEM . . . B 2 2.477 17.546 16.521 1 19.98 ? CMD HEM 901 A 1 HETATM 34 C CAD HEM . . . B 2 3.184 14.753 17.648 1 22.73 ? CAD HEM 901 A 1 HETATM 35 C CBD HEM . . . B 2 4.644 14.885 18.075 1 26.76 ? CBD HEM 901 A 1 HETATM 36 C CGD HEM . . . B 2 5.456 13.844 17.348 1 29.98 ? CGD HEM 901 A 1 HETATM 37 O O1D HEM . . . B 2 6.444 13.315 17.91 1 26.33 ? O1D HEM 901 A 1 HETATM 38 O O2D HEM . . . B 2 5.141 13.511 16.18 1 31.72 ? O2D HEM 901 A 1 HETATM 39 N NA HEM . . . B 2 0.24 15.394 22.161 1 25.34 ? NA HEM 901 A 1 HETATM 40 N NB HEM . . . B 2 -0.996 17.665 23.23 1 19.08 ? NB HEM 901 A 1 HETATM 41 N NC HEM . . . B 2 -0.464 19.153 20.779 1 23.71 ? NC HEM 901 A 1 HETATM 42 N ND HEM . . . B 2 0.937 16.795 19.876 1 24.73 ? ND HEM 901 A 1 HETATM 43 FE FE HEM . . . B 2 -0.173 17.176 21.345 1 23.65 ? FE HEM 901 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #