data_5G6L # _model_server_result.job_id 8WuZFepg902g8IF-_tp6WA _model_server_result.datetime_utc '2024-11-22 00:17:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5G6L # _exptl.entry_id 5G6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G6L _cell.length_a 80.71 _cell.length_b 94.39 _cell.length_c 61.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.7 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 142 n y N1 C8A H4B sing 143 n y C2 N2 H4B sing 144 n n C2 N3 H4B sing 145 n y N2 HN21 H4B sing 146 n n N2 HN22 H4B sing 147 n n N3 C4 H4B sing 148 n y N3 HN3 H4B sing 149 n n C4 O4 H4B doub 150 n n C4 C4A H4B sing 151 n y C4A C8A H4B doub 152 n y C4A N5 H4B sing 153 n n C8A N8 H4B sing 154 n n N5 C6 H4B sing 155 n n N5 HN5 H4B sing 156 n n N8 C7 H4B sing 157 n n N8 HN8 H4B sing 158 n n C6 C7 H4B sing 159 n n C6 C9 H4B sing 160 n n C6 H6 H4B sing 161 n n C7 H71 H4B sing 162 n n C7 H72 H4B sing 163 n n C9 O9 H4B sing 164 n n C9 C10 H4B sing 165 n n C9 H9 H4B sing 166 n n O9 HO9 H4B sing 167 n n C10 C11 H4B sing 168 n n C10 O10 H4B sing 169 n n C10 H10 H4B sing 170 n n C11 H111 H4B sing 171 n n C11 H112 H4B sing 172 n n C11 H113 H4B sing 173 n n O10 HO0 H4B sing 174 n n # _atom_sites.entry_id 5G6L _atom_sites.fract_transf_matrix[1][1] 0.01239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 H4B A 1 902 902 H4B H4B . D 4 CL A 1 903 903 CL CL . E 5 XEB A 1 904 904 XEB XEB . F 6 GOL A 1 905 905 GOL GOL . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . G 7 HOH A 13 2013 2013 HOH HOH . G 7 HOH A 14 2014 2014 HOH HOH . G 7 HOH A 15 2015 2015 HOH HOH . G 7 HOH A 16 2016 2016 HOH HOH . G 7 HOH A 17 2017 2017 HOH HOH . G 7 HOH A 18 2018 2018 HOH HOH . G 7 HOH A 19 2019 2019 HOH HOH . G 7 HOH A 20 2020 2020 HOH HOH . G 7 HOH A 21 2021 2021 HOH HOH . G 7 HOH A 22 2022 2022 HOH HOH . G 7 HOH A 23 2023 2023 HOH HOH . G 7 HOH A 24 2024 2024 HOH HOH . G 7 HOH A 25 2025 2025 HOH HOH . G 7 HOH A 26 2026 2026 HOH HOH . G 7 HOH A 27 2027 2027 HOH HOH . G 7 HOH A 28 2028 2028 HOH HOH . G 7 HOH A 29 2029 2029 HOH HOH . G 7 HOH A 30 2030 2030 HOH HOH . G 7 HOH A 31 2031 2031 HOH HOH . G 7 HOH A 32 2032 2032 HOH HOH . G 7 HOH A 33 2033 2033 HOH HOH . G 7 HOH A 34 2034 2034 HOH HOH . G 7 HOH A 35 2035 2035 HOH HOH . G 7 HOH A 36 2036 2036 HOH HOH . G 7 HOH A 37 2037 2037 HOH HOH . G 7 HOH A 38 2038 2038 HOH HOH . G 7 HOH A 39 2039 2039 HOH HOH . G 7 HOH A 40 2040 2040 HOH HOH . G 7 HOH A 41 2041 2041 HOH HOH . G 7 HOH A 42 2042 2042 HOH HOH . G 7 HOH A 43 2043 2043 HOH HOH . G 7 HOH A 44 2044 2044 HOH HOH . G 7 HOH A 45 2045 2045 HOH HOH . G 7 HOH A 46 2046 2046 HOH HOH . G 7 HOH A 47 2047 2047 HOH HOH . G 7 HOH A 48 2048 2048 HOH HOH . G 7 HOH A 49 2049 2049 HOH HOH . G 7 HOH A 50 2050 2050 HOH HOH . G 7 HOH A 51 2051 2051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . C 3 3.922 6.44 21.678 1 64.3 ? N1 H4B 902 A 1 HETATM 2 C C2 H4B . . . C 3 4.267 7.661 22.161 1 61.17 ? C2 H4B 902 A 1 HETATM 3 N N2 H4B . . . C 3 3.308 8.418 22.756 1 59.07 ? N2 H4B 902 A 1 HETATM 4 N N3 H4B . . . C 3 5.52 8.146 22.071 1 54.77 ? N3 H4B 902 A 1 HETATM 5 C C4 H4B . . . C 3 6.518 7.459 21.501 1 51.46 ? C4 H4B 902 A 1 HETATM 6 O O4 H4B . . . C 3 7.666 7.945 21.434 1 50.63 ? O4 H4B 902 A 1 HETATM 7 C C4A H4B . . . C 3 6.22 6.119 20.947 1 55.84 ? C4A H4B 902 A 1 HETATM 8 C C8A H4B . . . C 3 4.828 5.637 21.081 1 61.59 ? C8A H4B 902 A 1 HETATM 9 N N5 H4B . . . C 3 7.139 5.334 20.345 1 56.9 ? N5 H4B 902 A 1 HETATM 10 N N8 H4B . . . C 3 4.488 4.424 20.597 1 60.23 ? N8 H4B 902 A 1 HETATM 11 C C6 H4B . . . C 3 6.613 4.362 19.404 1 62.1 ? C6 H4B 902 A 1 HETATM 12 C C7 H4B . . . C 3 5.536 3.548 20.111 1 60.22 ? C7 H4B 902 A 1 HETATM 13 C C9 H4B . . . C 3 7.702 3.483 18.786 1 69.7 ? C9 H4B 902 A 1 HETATM 14 O O9 H4B . . . C 3 8.465 2.84 19.814 1 73.28 ? O9 H4B 902 A 1 HETATM 15 C C10 H4B . . . C 3 7.1 2.421 17.866 1 69.02 ? C10 H4B 902 A 1 HETATM 16 C C11 H4B . . . C 3 8.165 1.782 16.984 1 64.23 ? C11 H4B 902 A 1 HETATM 17 O O10 H4B . . . C 3 6.1 3.011 17.028 1 71.9 ? O10 H4B 902 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #