data_5G6P # _model_server_result.job_id Gx78XDWt4K8Zxnhs6eVG3Q _model_server_result.datetime_utc '2024-11-21 23:44:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5G6P # _exptl.entry_id 5G6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G6P _cell.length_a 80.72 _cell.length_b 94.64 _cell.length_c 62.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.639 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 188 n n CHA C4D HEM doub 189 n n CHA HHA HEM sing 190 n n CHB C4A HEM sing 191 n n CHB C1B HEM doub 192 n n CHB HHB HEM sing 193 n n CHC C4B HEM sing 194 n n CHC C1C HEM doub 195 n n CHC HHC HEM sing 196 n n CHD C4C HEM doub 197 n n CHD C1D HEM sing 198 n n CHD HHD HEM sing 199 n n C1A C2A HEM doub 200 n y C1A NA HEM sing 201 n y C2A C3A HEM sing 202 n y C2A CAA HEM sing 203 n n C3A C4A HEM doub 204 n y C3A CMA HEM sing 205 n n C4A NA HEM sing 206 n y CMA HMA HEM sing 207 n n CMA HMAA HEM sing 208 n n CMA HMAB HEM sing 209 n n CAA CBA HEM sing 210 n n CAA HAA HEM sing 211 n n CAA HAAA HEM sing 212 n n CBA CGA HEM sing 213 n n CBA HBA HEM sing 214 n n CBA HBAA HEM sing 215 n n CGA O1A HEM doub 216 n n CGA O2A HEM sing 217 n n C1B C2B HEM sing 218 n n C1B NB HEM sing 219 n n C2B C3B HEM doub 220 n n C2B CMB HEM sing 221 n n C3B C4B HEM sing 222 n n C3B CAB HEM sing 223 n n C4B NB HEM doub 224 n n CMB HMB HEM sing 225 n n CMB HMBA HEM sing 226 n n CMB HMBB HEM sing 227 n n CAB CBB HEM doub 228 n n CAB HAB HEM sing 229 n n CBB HBB HEM sing 230 n n CBB HBBA HEM sing 231 n n C1C C2C HEM sing 232 n y C1C NC HEM sing 233 n y C2C C3C HEM doub 234 n y C2C CMC HEM sing 235 n n C3C C4C HEM sing 236 n y C3C CAC HEM sing 237 n n C4C NC HEM sing 238 n y CMC HMC HEM sing 239 n n CMC HMCA HEM sing 240 n n CMC HMCB HEM sing 241 n n CAC CBC HEM doub 242 n n CAC HAC HEM sing 243 n n CBC HBC HEM sing 244 n n CBC HBCA HEM sing 245 n n C1D C2D HEM sing 246 n n C1D ND HEM doub 247 n n C2D C3D HEM doub 248 n n C2D CMD HEM sing 249 n n C3D C4D HEM sing 250 n n C3D CAD HEM sing 251 n n C4D ND HEM sing 252 n n CMD HMD HEM sing 253 n n CMD HMDA HEM sing 254 n n CMD HMDB HEM sing 255 n n CAD CBD HEM sing 256 n n CAD HAD HEM sing 257 n n CAD HADA HEM sing 258 n n CBD CGD HEM sing 259 n n CBD HBD HEM sing 260 n n CBD HBDA HEM sing 261 n n CGD O1D HEM doub 262 n n CGD O2D HEM sing 263 n n O2A H2A HEM sing 264 n n O2D H2D HEM sing 265 n n FE NA HEM sing 266 n n FE NB HEM sing 267 n n FE NC HEM sing 268 n n FE ND HEM sing 269 n n # _atom_sites.entry_id 5G6P _atom_sites.fract_transf_matrix[1][1] 0.012389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 CL A 1 903 903 CL CL . D 4 8VJ A 1 904 904 8VJ 8VJ . E 4 8VJ A 1 905 905 8VJ 8VJ . F 5 GOL A 1 906 906 GOL GOL . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . G 6 HOH A 81 2081 2081 HOH HOH . G 6 HOH A 82 2082 2082 HOH HOH . G 6 HOH A 83 2083 2083 HOH HOH . G 6 HOH A 84 2084 2084 HOH HOH . G 6 HOH A 85 2085 2085 HOH HOH . G 6 HOH A 86 2086 2086 HOH HOH . G 6 HOH A 87 2087 2087 HOH HOH . G 6 HOH A 88 2088 2088 HOH HOH . G 6 HOH A 89 2089 2089 HOH HOH . G 6 HOH A 90 2090 2090 HOH HOH . G 6 HOH A 91 2091 2091 HOH HOH . G 6 HOH A 92 2092 2092 HOH HOH . G 6 HOH A 93 2093 2093 HOH HOH . G 6 HOH A 94 2094 2094 HOH HOH . G 6 HOH A 95 2095 2095 HOH HOH . G 6 HOH A 96 2096 2096 HOH HOH . G 6 HOH A 97 2097 2097 HOH HOH . G 6 HOH A 98 2098 2098 HOH HOH . G 6 HOH A 99 2099 2099 HOH HOH . G 6 HOH A 100 2100 2100 HOH HOH . G 6 HOH A 101 2101 2101 HOH HOH . G 6 HOH A 102 2102 2102 HOH HOH . G 6 HOH A 103 2103 2103 HOH HOH . G 6 HOH A 104 2104 2104 HOH HOH . G 6 HOH A 105 2105 2105 HOH HOH . G 6 HOH A 106 2106 2106 HOH HOH . G 6 HOH A 107 2107 2107 HOH HOH . G 6 HOH A 108 2108 2108 HOH HOH . G 6 HOH A 109 2109 2109 HOH HOH . G 6 HOH A 110 2110 2110 HOH HOH . G 6 HOH A 111 2111 2111 HOH HOH . G 6 HOH A 112 2112 2112 HOH HOH . G 6 HOH A 113 2113 2113 HOH HOH . G 6 HOH A 114 2114 2114 HOH HOH . G 6 HOH A 115 2115 2115 HOH HOH . G 6 HOH A 116 2116 2116 HOH HOH . G 6 HOH A 117 2117 2117 HOH HOH . G 6 HOH A 118 2118 2118 HOH HOH . G 6 HOH A 119 2119 2119 HOH HOH . G 6 HOH A 120 2120 2120 HOH HOH . G 6 HOH A 121 2121 2121 HOH HOH . G 6 HOH A 122 2122 2122 HOH HOH . G 6 HOH A 123 2123 2123 HOH HOH . G 6 HOH A 124 2124 2124 HOH HOH . G 6 HOH A 125 2125 2125 HOH HOH . G 6 HOH A 126 2126 2126 HOH HOH . G 6 HOH A 127 2127 2127 HOH HOH . G 6 HOH A 128 2128 2128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 1.709 14.503 20.949 1 35.13 ? CHA HEM 901 A 1 HETATM 2 C CHB HEM . . . B 2 -0.917 15.509 24.93 1 35.53 ? CHB HEM 901 A 1 HETATM 3 C CHC HEM . . . B 2 -1.508 20.086 23.333 1 32.89 ? CHC HEM 901 A 1 HETATM 4 C CHD HEM . . . B 2 0.605 18.884 19.142 1 34.2 ? CHD HEM 901 A 1 HETATM 5 C C1A HEM . . . B 2 1.147 14.484 22.206 1 37.28 ? C1A HEM 901 A 1 HETATM 6 C C2A HEM . . . B 2 1.459 13.49 23.171 1 36.45 ? C2A HEM 901 A 1 HETATM 7 C C3A HEM . . . B 2 0.719 13.775 24.27 1 38.4 ? C3A HEM 901 A 1 HETATM 8 C C4A HEM . . . B 2 -0.051 14.934 24.009 1 37.25 ? C4A HEM 901 A 1 HETATM 9 C CMA HEM . . . B 2 0.712 12.984 25.555 1 37.23 ? CMA HEM 901 A 1 HETATM 10 C CAA HEM . . . B 2 2.41 12.311 23.04 1 39.63 ? CAA HEM 901 A 1 HETATM 11 C CBA HEM . . . B 2 3.833 12.731 23.465 1 42.01 ? CBA HEM 901 A 1 HETATM 12 C CGA HEM . . . B 2 4.849 11.595 23.468 1 46.97 ? CGA HEM 901 A 1 HETATM 13 O O1A HEM . . . B 2 4.558 10.439 23.864 1 45.37 ? O1A HEM 901 A 1 HETATM 14 O O2A HEM . . . B 2 6.032 11.801 23.085 1 48.48 ? O2A HEM 901 A 1 HETATM 15 C C1B HEM . . . B 2 -1.257 16.871 24.823 1 36.37 ? C1B HEM 901 A 1 HETATM 16 C C2B HEM . . . B 2 -1.895 17.593 25.887 1 35.14 ? C2B HEM 901 A 1 HETATM 17 C C3B HEM . . . B 2 -2.086 18.871 25.468 1 33.62 ? C3B HEM 901 A 1 HETATM 18 C C4B HEM . . . B 2 -1.529 18.912 24.084 1 33.08 ? C4B HEM 901 A 1 HETATM 19 C CMB HEM . . . B 2 -2.313 17.057 27.239 1 36.71 ? CMB HEM 901 A 1 HETATM 20 C CAB HEM . . . B 2 -2.715 19.941 26.288 1 36.54 ? CAB HEM 901 A 1 HETATM 21 C CBB HEM . . . B 2 -3.283 21.056 25.804 1 36.72 ? CBB HEM 901 A 1 HETATM 22 C C1C HEM . . . B 2 -0.919 20.196 22.082 1 35.67 ? C1C HEM 901 A 1 HETATM 23 C C2C HEM . . . B 2 -0.754 21.386 21.351 1 38.13 ? C2C HEM 901 A 1 HETATM 24 C C3C HEM . . . B 2 -0.162 21.055 20.133 1 36.9 ? C3C HEM 901 A 1 HETATM 25 C C4C HEM . . . B 2 0.045 19.637 20.149 1 36.45 ? C4C HEM 901 A 1 HETATM 26 C CMC HEM . . . B 2 -1.167 22.759 21.829 1 38.63 ? CMC HEM 901 A 1 HETATM 27 C CAC HEM . . . B 2 0.216 21.974 19.036 1 39.49 ? CAC HEM 901 A 1 HETATM 28 C CBC HEM . . . B 2 -0.434 23.104 18.722 1 39.76 ? CBC HEM 901 A 1 HETATM 29 C C1D HEM . . . B 2 1.088 17.581 19.362 1 32.93 ? C1D HEM 901 A 1 HETATM 30 C C2D HEM . . . B 2 1.96 16.93 18.368 1 33.14 ? C2D HEM 901 A 1 HETATM 31 C C3D HEM . . . B 2 2.271 15.722 18.866 1 34.93 ? C3D HEM 901 A 1 HETATM 32 C C4D HEM . . . B 2 1.589 15.634 20.166 1 33.54 ? C4D HEM 901 A 1 HETATM 33 C CMD HEM . . . B 2 2.421 17.51 17.046 1 34.44 ? CMD HEM 901 A 1 HETATM 34 C CAD HEM . . . B 2 3.129 14.659 18.219 1 38.6 ? CAD HEM 901 A 1 HETATM 35 C CBD HEM . . . B 2 4.634 14.943 18.313 1 44.37 ? CBD HEM 901 A 1 HETATM 36 C CGD HEM . . . B 2 5.403 13.788 17.694 1 46.15 ? CGD HEM 901 A 1 HETATM 37 O O1D HEM . . . B 2 6.492 13.448 18.205 1 43.85 ? O1D HEM 901 A 1 HETATM 38 O O2D HEM . . . B 2 4.984 13.176 16.671 1 46.94 ? O2D HEM 901 A 1 HETATM 39 N NA HEM . . . B 2 0.221 15.385 22.733 1 38.34 ? NA HEM 901 A 1 HETATM 40 N NB HEM . . . B 2 -1.034 17.686 23.78 1 31.47 ? NB HEM 901 A 1 HETATM 41 N NC HEM . . . B 2 -0.456 19.16 21.334 1 38.68 ? NC HEM 901 A 1 HETATM 42 N ND HEM . . . B 2 0.914 16.774 20.434 1 29.28 ? ND HEM 901 A 1 HETATM 43 FE FE HEM . . . B 2 -0.191 17.177 21.912 1 38.35 ? FE HEM 901 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #