data_5G6P # _model_server_result.job_id xXVGY8Yshh3EirTG-4cdLQ _model_server_result.datetime_utc '2024-11-22 00:07:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5g6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":904}' # _entry.id 5G6P # _exptl.entry_id 5G6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.39 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[[4-[(dimethylamino)methyl]phenoxy]methyl]quinolin-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5G6P _cell.length_a 80.72 _cell.length_b 94.64 _cell.length_c 62.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.639 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H21 N3 O' _chem_comp.formula_weight 307.39 _chem_comp.id 8VJ _chem_comp.mon_nstd_flag . _chem_comp.name 7-[[4-[(dimethylamino)methyl]phenoxy]methyl]quinolin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 N28 8VJ sing 1 n n N28 C30 8VJ sing 2 n n N28 C27 8VJ sing 3 n n C27 C24 8VJ sing 4 n n C26 C25 8VJ doub 5 n y C26 C21 8VJ sing 6 n y C25 C24 8VJ sing 7 n y C24 C23 8VJ doub 8 n y C23 C22 8VJ sing 9 n y C22 C21 8VJ doub 10 n y C21 O12 8VJ sing 11 n n O12 C11 8VJ sing 12 n n C11 C08 8VJ sing 13 n n C10 C09 8VJ sing 14 n y C10 C05 8VJ doub 15 n y C10 N01 8VJ sing 16 n y C09 C08 8VJ doub 17 n y C08 C07 8VJ sing 18 n y C07 C06 8VJ doub 19 n y C06 C05 8VJ sing 20 n y C05 C04 8VJ sing 21 n y C04 C03 8VJ doub 22 n y C03 C02 8VJ sing 23 n y C02 N02 8VJ sing 24 n n C02 N01 8VJ doub 25 n y C29 H291 8VJ sing 26 n n C29 H292 8VJ sing 27 n n C29 H293 8VJ sing 28 n n C30 H301 8VJ sing 29 n n C30 H302 8VJ sing 30 n n C30 H303 8VJ sing 31 n n C27 H271 8VJ sing 32 n n C27 H272 8VJ sing 33 n n C26 H26 8VJ sing 34 n n C25 H25 8VJ sing 35 n n C23 H23 8VJ sing 36 n n C22 H22 8VJ sing 37 n n C11 H111 8VJ sing 38 n n C11 H112 8VJ sing 39 n n C09 H09 8VJ sing 40 n n C07 H07 8VJ sing 41 n n C06 H06 8VJ sing 42 n n C04 H04 8VJ sing 43 n n C03 H03 8VJ sing 44 n n N02 H021 8VJ sing 45 n n N02 H022 8VJ sing 46 n n # _atom_sites.entry_id 5G6P _atom_sites.fract_transf_matrix[1][1] 0.012389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 CL A 1 903 903 CL CL . D 4 8VJ A 1 904 904 8VJ 8VJ . E 4 8VJ A 1 905 905 8VJ 8VJ . F 5 GOL A 1 906 906 GOL GOL . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . G 6 HOH A 81 2081 2081 HOH HOH . G 6 HOH A 82 2082 2082 HOH HOH . G 6 HOH A 83 2083 2083 HOH HOH . G 6 HOH A 84 2084 2084 HOH HOH . G 6 HOH A 85 2085 2085 HOH HOH . G 6 HOH A 86 2086 2086 HOH HOH . G 6 HOH A 87 2087 2087 HOH HOH . G 6 HOH A 88 2088 2088 HOH HOH . G 6 HOH A 89 2089 2089 HOH HOH . G 6 HOH A 90 2090 2090 HOH HOH . G 6 HOH A 91 2091 2091 HOH HOH . G 6 HOH A 92 2092 2092 HOH HOH . G 6 HOH A 93 2093 2093 HOH HOH . G 6 HOH A 94 2094 2094 HOH HOH . G 6 HOH A 95 2095 2095 HOH HOH . G 6 HOH A 96 2096 2096 HOH HOH . G 6 HOH A 97 2097 2097 HOH HOH . G 6 HOH A 98 2098 2098 HOH HOH . G 6 HOH A 99 2099 2099 HOH HOH . G 6 HOH A 100 2100 2100 HOH HOH . G 6 HOH A 101 2101 2101 HOH HOH . G 6 HOH A 102 2102 2102 HOH HOH . G 6 HOH A 103 2103 2103 HOH HOH . G 6 HOH A 104 2104 2104 HOH HOH . G 6 HOH A 105 2105 2105 HOH HOH . G 6 HOH A 106 2106 2106 HOH HOH . G 6 HOH A 107 2107 2107 HOH HOH . G 6 HOH A 108 2108 2108 HOH HOH . G 6 HOH A 109 2109 2109 HOH HOH . G 6 HOH A 110 2110 2110 HOH HOH . G 6 HOH A 111 2111 2111 HOH HOH . G 6 HOH A 112 2112 2112 HOH HOH . G 6 HOH A 113 2113 2113 HOH HOH . G 6 HOH A 114 2114 2114 HOH HOH . G 6 HOH A 115 2115 2115 HOH HOH . G 6 HOH A 116 2116 2116 HOH HOH . G 6 HOH A 117 2117 2117 HOH HOH . G 6 HOH A 118 2118 2118 HOH HOH . G 6 HOH A 119 2119 2119 HOH HOH . G 6 HOH A 120 2120 2120 HOH HOH . G 6 HOH A 121 2121 2121 HOH HOH . G 6 HOH A 122 2122 2122 HOH HOH . G 6 HOH A 123 2123 2123 HOH HOH . G 6 HOH A 124 2124 2124 HOH HOH . G 6 HOH A 125 2125 2125 HOH HOH . G 6 HOH A 126 2126 2126 HOH HOH . G 6 HOH A 127 2127 2127 HOH HOH . G 6 HOH A 128 2128 2128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C29 8VJ . . . D 4 13.252 15.459 18.778 1 76.32 ? C29 8VJ 904 A 1 HETATM 2 N N28 8VJ . . . D 4 12.214 14.965 17.858 1 74.38 ? N28 8VJ 904 A 1 HETATM 3 C C30 8VJ . . . D 4 12.814 14.569 16.576 1 75.69 ? C30 8VJ 904 A 1 HETATM 4 C C27 8VJ . . . D 4 11.499 13.832 18.471 1 69.17 ? C27 8VJ 904 A 1 HETATM 5 C C26 8VJ . . . D 4 8.612 16.198 19.156 1 60.95 ? C26 8VJ 904 A 1 HETATM 6 C C25 8VJ . . . D 4 9.788 15.653 18.646 1 64.43 ? C25 8VJ 904 A 1 HETATM 7 C C24 8VJ . . . D 4 10.218 14.386 19.047 1 64.89 ? C24 8VJ 904 A 1 HETATM 8 C C23 8VJ . . . D 4 9.472 13.653 19.966 1 62.2 ? C23 8VJ 904 A 1 HETATM 9 C C22 8VJ . . . D 4 8.295 14.197 20.486 1 61.47 ? C22 8VJ 904 A 1 HETATM 10 C C21 8VJ . . . D 4 7.863 15.47 20.079 1 59.46 ? C21 8VJ 904 A 1 HETATM 11 O O12 8VJ . . . D 4 6.703 16.006 20.58 1 52.91 ? O12 8VJ 904 A 1 HETATM 12 C C11 8VJ . . . D 4 6.002 15.355 21.634 1 45.91 ? C11 8VJ 904 A 1 HETATM 13 C C10 8VJ . . . D 4 3.524 17.094 23.874 1 40.38 ? C10 8VJ 904 A 1 HETATM 14 C C09 8VJ . . . D 4 4.478 16.204 23.41 1 41.64 ? C09 8VJ 904 A 1 HETATM 15 C C08 8VJ . . . D 4 4.962 16.333 22.119 1 43.78 ? C08 8VJ 904 A 1 HETATM 16 C C07 8VJ . . . D 4 4.493 17.366 21.303 1 43.91 ? C07 8VJ 904 A 1 HETATM 17 C C06 8VJ . . . D 4 3.526 18.263 21.765 1 41.46 ? C06 8VJ 904 A 1 HETATM 18 C C05 8VJ . . . D 4 3.039 18.121 23.065 1 40.83 ? C05 8VJ 904 A 1 HETATM 19 C C04 8VJ . . . D 4 2.078 18.996 23.583 1 40.21 ? C04 8VJ 904 A 1 HETATM 20 C C03 8VJ . . . D 4 1.633 18.809 24.894 1 38.49 ? C03 8VJ 904 A 1 HETATM 21 C C02 8VJ . . . D 4 2.149 17.753 25.659 1 37.83 ? C02 8VJ 904 A 1 HETATM 22 N N02 8VJ . . . D 4 1.751 17.527 26.946 1 37.62 ? N02 8VJ 904 A 1 HETATM 23 N N01 8VJ . . . D 4 3.074 16.93 25.133 1 38.93 ? N01 8VJ 904 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #