data_5GGA
#
_model_server_result.job_id            26Qpo6SszlXp8dHIawkxAw 
_model_server_result.datetime_utc      '2024-11-24 17:50:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gga 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5GGA 
#
_exptl.entry_id    5GGA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.01 
_cell.angle_gamma         90 
_cell.entry_id            5GGA 
_cell.length_a            41.73 
_cell.length_b            84.3 
_cell.length_c            43.58 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GGA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 85 A LYS 65 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc2 A OE2 GLU 105 A GLU 85 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc3 E MG MG . A MG 404 1_555 F O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc4 E MG MG . A MG 404 1_555 F O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc5 E MG MG . A MG 404 1_555 F O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc6 E MG MG . A MG 404 1_555 F O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 347 n n 
P1 O2 POP sing 348 n n 
P1 O3 POP sing 349 n n 
P1 O POP sing 350 n n 
O2 HO2 POP sing 351 n n 
O P2 POP sing 352 n n 
P2 O4 POP doub 353 n n 
P2 O5 POP sing 354 n n 
P2 O6 POP sing 355 n n 
O5 HO5 POP sing 356 n n 
#
_atom_sites.entry_id                     5GGA 
_atom_sites.fract_transf_matrix[1][1]    0.023964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00168 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023003 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 G8D A 1 401 1 G8D G8D . 
C 3 8GM A 1 402 1 8GM 8GM . 
D 4 POP A 1 403 1 POP POP . 
E 5 MG A 1 404 1 MG MG . 
F 6 HOH A 1 501 190 HOH HOH . 
F 6 HOH A 2 502 104 HOH HOH . 
F 6 HOH A 3 503 178 HOH HOH . 
F 6 HOH A 4 504 91 HOH HOH . 
F 6 HOH A 5 505 6 HOH HOH . 
F 6 HOH A 6 506 182 HOH HOH . 
F 6 HOH A 7 507 180 HOH HOH . 
F 6 HOH A 8 508 232 HOH HOH . 
F 6 HOH A 9 509 46 HOH HOH . 
F 6 HOH A 10 510 237 HOH HOH . 
F 6 HOH A 11 511 22 HOH HOH . 
F 6 HOH A 12 512 24 HOH HOH . 
F 6 HOH A 13 513 36 HOH HOH . 
F 6 HOH A 14 514 23 HOH HOH . 
F 6 HOH A 15 515 81 HOH HOH . 
F 6 HOH A 16 516 179 HOH HOH . 
F 6 HOH A 17 517 103 HOH HOH . 
F 6 HOH A 18 518 64 HOH HOH . 
F 6 HOH A 19 519 155 HOH HOH . 
F 6 HOH A 20 520 110 HOH HOH . 
F 6 HOH A 21 521 133 HOH HOH . 
F 6 HOH A 22 522 27 HOH HOH . 
F 6 HOH A 23 523 164 HOH HOH . 
F 6 HOH A 24 524 60 HOH HOH . 
F 6 HOH A 25 525 113 HOH HOH . 
F 6 HOH A 26 526 14 HOH HOH . 
F 6 HOH A 27 527 177 HOH HOH . 
F 6 HOH A 28 528 65 HOH HOH . 
F 6 HOH A 29 529 161 HOH HOH . 
F 6 HOH A 30 530 137 HOH HOH . 
F 6 HOH A 31 531 21 HOH HOH . 
F 6 HOH A 32 532 82 HOH HOH . 
F 6 HOH A 33 533 2 HOH HOH . 
F 6 HOH A 34 534 181 HOH HOH . 
F 6 HOH A 35 535 228 HOH HOH . 
F 6 HOH A 36 536 138 HOH HOH . 
F 6 HOH A 37 537 5 HOH HOH . 
F 6 HOH A 38 538 111 HOH HOH . 
F 6 HOH A 39 539 71 HOH HOH . 
F 6 HOH A 40 540 115 HOH HOH . 
F 6 HOH A 41 541 38 HOH HOH . 
F 6 HOH A 42 542 9 HOH HOH . 
F 6 HOH A 43 543 124 HOH HOH . 
F 6 HOH A 44 544 132 HOH HOH . 
F 6 HOH A 45 545 211 HOH HOH . 
F 6 HOH A 46 546 105 HOH HOH . 
F 6 HOH A 47 547 11 HOH HOH . 
F 6 HOH A 48 548 160 HOH HOH . 
F 6 HOH A 49 549 153 HOH HOH . 
F 6 HOH A 50 550 99 HOH HOH . 
F 6 HOH A 51 551 54 HOH HOH . 
F 6 HOH A 52 552 50 HOH HOH . 
F 6 HOH A 53 553 145 HOH HOH . 
F 6 HOH A 54 554 31 HOH HOH . 
F 6 HOH A 55 555 157 HOH HOH . 
F 6 HOH A 56 556 116 HOH HOH . 
F 6 HOH A 57 557 107 HOH HOH . 
F 6 HOH A 58 558 114 HOH HOH . 
F 6 HOH A 59 559 47 HOH HOH . 
F 6 HOH A 60 560 29 HOH HOH . 
F 6 HOH A 61 561 225 HOH HOH . 
F 6 HOH A 62 562 87 HOH HOH . 
F 6 HOH A 63 563 76 HOH HOH . 
F 6 HOH A 64 564 41 HOH HOH . 
F 6 HOH A 65 565 51 HOH HOH . 
F 6 HOH A 66 566 85 HOH HOH . 
F 6 HOH A 67 567 96 HOH HOH . 
F 6 HOH A 68 568 84 HOH HOH . 
F 6 HOH A 69 569 19 HOH HOH . 
F 6 HOH A 70 570 16 HOH HOH . 
F 6 HOH A 71 571 20 HOH HOH . 
F 6 HOH A 72 572 156 HOH HOH . 
F 6 HOH A 73 573 17 HOH HOH . 
F 6 HOH A 74 574 53 HOH HOH . 
F 6 HOH A 75 575 59 HOH HOH . 
F 6 HOH A 76 576 174 HOH HOH . 
F 6 HOH A 77 577 233 HOH HOH . 
F 6 HOH A 78 578 93 HOH HOH . 
F 6 HOH A 79 579 3 HOH HOH . 
F 6 HOH A 80 580 226 HOH HOH . 
F 6 HOH A 81 581 32 HOH HOH . 
F 6 HOH A 82 582 183 HOH HOH . 
F 6 HOH A 83 583 52 HOH HOH . 
F 6 HOH A 84 584 201 HOH HOH . 
F 6 HOH A 85 585 10 HOH HOH . 
F 6 HOH A 86 586 7 HOH HOH . 
F 6 HOH A 87 587 26 HOH HOH . 
F 6 HOH A 88 588 77 HOH HOH . 
F 6 HOH A 89 589 149 HOH HOH . 
F 6 HOH A 90 590 62 HOH HOH . 
F 6 HOH A 91 591 15 HOH HOH . 
F 6 HOH A 92 592 73 HOH HOH . 
F 6 HOH A 93 593 158 HOH HOH . 
F 6 HOH A 94 594 170 HOH HOH . 
F 6 HOH A 95 595 118 HOH HOH . 
F 6 HOH A 96 596 34 HOH HOH . 
F 6 HOH A 97 597 1 HOH HOH . 
F 6 HOH A 98 598 121 HOH HOH . 
F 6 HOH A 99 599 171 HOH HOH . 
F 6 HOH A 100 600 122 HOH HOH . 
F 6 HOH A 101 601 129 HOH HOH . 
F 6 HOH A 102 602 227 HOH HOH . 
F 6 HOH A 103 603 141 HOH HOH . 
F 6 HOH A 104 604 55 HOH HOH . 
F 6 HOH A 105 605 148 HOH HOH . 
F 6 HOH A 106 606 70 HOH HOH . 
F 6 HOH A 107 607 127 HOH HOH . 
F 6 HOH A 108 608 146 HOH HOH . 
F 6 HOH A 109 609 172 HOH HOH . 
F 6 HOH A 110 610 56 HOH HOH . 
F 6 HOH A 111 611 35 HOH HOH . 
F 6 HOH A 112 612 78 HOH HOH . 
F 6 HOH A 113 613 39 HOH HOH . 
F 6 HOH A 114 614 12 HOH HOH . 
F 6 HOH A 115 615 109 HOH HOH . 
F 6 HOH A 116 616 191 HOH HOH . 
F 6 HOH A 117 617 49 HOH HOH . 
F 6 HOH A 118 618 134 HOH HOH . 
F 6 HOH A 119 619 163 HOH HOH . 
F 6 HOH A 120 620 144 HOH HOH . 
F 6 HOH A 121 621 75 HOH HOH . 
F 6 HOH A 122 622 79 HOH HOH . 
F 6 HOH A 123 623 8 HOH HOH . 
F 6 HOH A 124 624 187 HOH HOH . 
F 6 HOH A 125 625 168 HOH HOH . 
F 6 HOH A 126 626 229 HOH HOH . 
F 6 HOH A 127 627 90 HOH HOH . 
F 6 HOH A 128 628 67 HOH HOH . 
F 6 HOH A 129 629 130 HOH HOH . 
F 6 HOH A 130 630 131 HOH HOH . 
F 6 HOH A 131 631 128 HOH HOH . 
F 6 HOH A 132 632 57 HOH HOH . 
F 6 HOH A 133 633 135 HOH HOH . 
F 6 HOH A 134 634 119 HOH HOH . 
F 6 HOH A 135 635 4 HOH HOH . 
F 6 HOH A 136 636 92 HOH HOH . 
F 6 HOH A 137 637 63 HOH HOH . 
F 6 HOH A 138 638 94 HOH HOH . 
F 6 HOH A 139 639 192 HOH HOH . 
F 6 HOH A 140 640 37 HOH HOH . 
F 6 HOH A 141 641 108 HOH HOH . 
F 6 HOH A 142 642 33 HOH HOH . 
F 6 HOH A 143 643 80 HOH HOH . 
F 6 HOH A 144 644 86 HOH HOH . 
F 6 HOH A 145 645 154 HOH HOH . 
F 6 HOH A 146 646 136 HOH HOH . 
F 6 HOH A 147 647 222 HOH HOH . 
F 6 HOH A 148 648 25 HOH HOH . 
F 6 HOH A 149 649 72 HOH HOH . 
F 6 HOH A 150 650 61 HOH HOH . 
F 6 HOH A 151 651 18 HOH HOH . 
F 6 HOH A 152 652 97 HOH HOH . 
F 6 HOH A 153 653 199 HOH HOH . 
F 6 HOH A 154 654 151 HOH HOH . 
F 6 HOH A 155 655 42 HOH HOH . 
F 6 HOH A 156 656 74 HOH HOH . 
F 6 HOH A 157 657 236 HOH HOH . 
F 6 HOH A 158 658 126 HOH HOH . 
F 6 HOH A 159 659 204 HOH HOH . 
F 6 HOH A 160 660 125 HOH HOH . 
F 6 HOH A 161 661 101 HOH HOH . 
F 6 HOH A 162 662 123 HOH HOH . 
F 6 HOH A 163 663 142 HOH HOH . 
F 6 HOH A 164 664 98 HOH HOH . 
F 6 HOH A 165 665 193 HOH HOH . 
F 6 HOH A 166 666 165 HOH HOH . 
F 6 HOH A 167 667 202 HOH HOH . 
F 6 HOH A 168 668 28 HOH HOH . 
F 6 HOH A 169 669 205 HOH HOH . 
F 6 HOH A 170 670 169 HOH HOH . 
F 6 HOH A 171 671 106 HOH HOH . 
F 6 HOH A 172 672 44 HOH HOH . 
F 6 HOH A 173 673 150 HOH HOH . 
F 6 HOH A 174 674 117 HOH HOH . 
F 6 HOH A 175 675 45 HOH HOH . 
F 6 HOH A 176 676 147 HOH HOH . 
F 6 HOH A 177 677 173 HOH HOH . 
F 6 HOH A 178 678 69 HOH HOH . 
F 6 HOH A 179 679 206 HOH HOH . 
F 6 HOH A 180 680 167 HOH HOH . 
F 6 HOH A 181 681 221 HOH HOH . 
F 6 HOH A 182 682 95 HOH HOH . 
F 6 HOH A 183 683 120 HOH HOH . 
F 6 HOH A 184 684 224 HOH HOH . 
F 6 HOH A 185 685 143 HOH HOH . 
F 6 HOH A 186 686 162 HOH HOH . 
F 6 HOH A 187 687 194 HOH HOH . 
F 6 HOH A 188 688 13 HOH HOH . 
F 6 HOH A 189 689 100 HOH HOH . 
F 6 HOH A 190 690 189 HOH HOH . 
F 6 HOH A 191 691 89 HOH HOH . 
F 6 HOH A 192 692 215 HOH HOH . 
F 6 HOH A 193 693 197 HOH HOH . 
F 6 HOH A 194 694 30 HOH HOH . 
F 6 HOH A 195 695 185 HOH HOH . 
F 6 HOH A 196 696 207 HOH HOH . 
F 6 HOH A 197 697 203 HOH HOH . 
F 6 HOH A 198 698 152 HOH HOH . 
F 6 HOH A 199 699 176 HOH HOH . 
F 6 HOH A 200 700 58 HOH HOH . 
F 6 HOH A 201 701 196 HOH HOH . 
F 6 HOH A 202 702 234 HOH HOH . 
F 6 HOH A 203 703 198 HOH HOH . 
F 6 HOH A 204 704 223 HOH HOH . 
F 6 HOH A 205 705 235 HOH HOH . 
F 6 HOH A 206 706 48 HOH HOH . 
F 6 HOH A 207 707 188 HOH HOH . 
F 6 HOH A 208 708 219 HOH HOH . 
F 6 HOH A 209 709 66 HOH HOH . 
F 6 HOH A 210 710 195 HOH HOH . 
F 6 HOH A 211 711 43 HOH HOH . 
F 6 HOH A 212 712 83 HOH HOH . 
F 6 HOH A 213 713 200 HOH HOH . 
F 6 HOH A 214 714 88 HOH HOH . 
F 6 HOH A 215 715 216 HOH HOH . 
F 6 HOH A 216 716 230 HOH HOH . 
F 6 HOH A 217 717 186 HOH HOH . 
F 6 HOH A 218 718 238 HOH HOH . 
F 6 HOH A 219 719 214 HOH HOH . 
F 6 HOH A 220 720 166 HOH HOH . 
F 6 HOH A 221 721 220 HOH HOH . 
F 6 HOH A 222 722 112 HOH HOH . 
F 6 HOH A 223 723 140 HOH HOH . 
F 6 HOH A 224 724 159 HOH HOH . 
F 6 HOH A 225 725 184 HOH HOH . 
F 6 HOH A 226 726 231 HOH HOH . 
F 6 HOH A 227 727 175 HOH HOH . 
F 6 HOH A 228 728 139 HOH HOH . 
F 6 HOH A 229 729 209 HOH HOH . 
F 6 HOH A 230 730 210 HOH HOH . 
F 6 HOH A 231 731 40 HOH HOH . 
F 6 HOH A 232 732 68 HOH HOH . 
F 6 HOH A 233 733 218 HOH HOH . 
F 6 HOH A 234 734 213 HOH HOH . 
F 6 HOH A 235 735 212 HOH HOH . 
F 6 HOH A 236 736 208 HOH HOH . 
F 6 HOH A 237 737 102 HOH HOH . 
F 6 HOH A 238 738 217 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . D 4 3.762 -19.021 22.816 1 31.49 ? P1 POP 403 A 1 
HETATM 2 O O1 POP . . . D 4 4.628 -17.879 22.228 1 26.68 ? O1 POP 403 A 1 
HETATM 3 O O2 POP . . . D 4 2.306 -18.919 22.275 1 35.18 ? O2 POP 403 A 1 
HETATM 4 O O3 POP . . . D 4 4.34 -20.486 22.648 1 29.27 ? O3 POP 403 A 1 
HETATM 5 O O POP . . . D 4 3.779 -18.675 24.382 1 29.94 ? O POP 403 A 1 
HETATM 6 P P2 POP . . . D 4 2.868 -19.137 25.662 1 30.33 ? P2 POP 403 A 1 
HETATM 7 O O4 POP . . . D 4 2.216 -20.402 25.097 1 31.48 ? O4 POP 403 A 1 
HETATM 8 O O5 POP . . . D 4 1.82 -18.02 25.796 1 28.35 ? O5 POP 403 A 1 
HETATM 9 O O6 POP . . . D 4 3.887 -19.242 26.735 1 34.19 ? O6 POP 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           9 
#