data_5GGX # _model_server_result.job_id 7oMKVSK6x4QGV_OfIck4Zw _model_server_result.datetime_utc '2025-09-04 16:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ggx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5GGX # _exptl.entry_id 5GGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 721.622 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DEFEROXAMINE MESYLATE FE(III) COMPLEX' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GGX _cell.length_a 191.145 _cell.length_b 191.145 _cell.length_c 129.164 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C27 H49 Fe N6 O11 S' _chem_comp.formula_weight 721.622 _chem_comp.id DEF _chem_comp.mon_nstd_flag . _chem_comp.name 'DEFEROXAMINE MESYLATE FE(III) COMPLEX' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE O11 DEF sing 70 n n FE O12 DEF sing 71 n n FE O21 DEF sing 72 n n FE O22 DEF sing 73 n n FE O31 DEF sing 74 n n FE O32 DEF sing 75 n n O11 N11 DEF sing 76 n n O12 C11 DEF doub 77 n n O21 N21 DEF sing 78 n n O22 C21 DEF doub 79 n n O31 N31 DEF sing 80 n n O32 C31 DEF doub 81 n n N11 C11 DEF sing 82 n n N11 C39 DEF sing 83 n n C11 C12 DEF sing 84 n n C12 C13 DEF sing 85 n n C12 H121 DEF sing 86 n n C12 H122 DEF sing 87 n n C13 C14 DEF sing 88 n n C13 H131 DEF sing 89 n n C13 H132 DEF sing 90 n n C14 O13 DEF doub 91 n n C14 N12 DEF sing 92 n n N12 C15 DEF sing 93 n n N12 H12N DEF sing 94 n n C15 C16 DEF sing 95 n n C15 H151 DEF sing 96 n n C15 H152 DEF sing 97 n n C16 C17 DEF sing 98 n n C16 H161 DEF sing 99 n n C16 H162 DEF sing 100 n n C18 C17 DEF sing 101 n n C18 C19 DEF sing 102 n n C18 H181 DEF sing 103 n n C18 H182 DEF sing 104 n n C17 H171 DEF sing 105 n n C17 H172 DEF sing 106 n n C19 N21 DEF sing 107 n n C19 H191 DEF sing 108 n n C19 H192 DEF sing 109 n n N21 C21 DEF sing 110 n n C21 C22 DEF sing 111 n n C22 C23 DEF sing 112 n n C22 H221 DEF sing 113 n n C22 H222 DEF sing 114 n n C23 C24 DEF sing 115 n n C23 H231 DEF sing 116 n n C23 H232 DEF sing 117 n n C24 O23 DEF doub 118 n n C24 N22 DEF sing 119 n n N22 C25 DEF sing 120 n n N22 H22N DEF sing 121 n n C25 C26 DEF sing 122 n n C25 H251 DEF sing 123 n n C25 H252 DEF sing 124 n n C26 C27 DEF sing 125 n n C26 H261 DEF sing 126 n n C26 H262 DEF sing 127 n n C27 C28 DEF sing 128 n n C27 H271 DEF sing 129 n n C27 H272 DEF sing 130 n n C28 C29 DEF sing 131 n n C28 H281 DEF sing 132 n n C28 H282 DEF sing 133 n n C29 N31 DEF sing 134 n n C29 H291 DEF sing 135 n n C29 H292 DEF sing 136 n n N31 C31 DEF sing 137 n n C31 C32 DEF sing 138 n n C32 C33 DEF sing 139 n n C32 H321 DEF sing 140 n n C32 H322 DEF sing 141 n n C39 C40 DEF sing 142 n n C39 H391 DEF sing 143 n n C39 H392 DEF sing 144 n n C33 H331 DEF sing 145 n n C33 H332 DEF sing 146 n n C33 H333 DEF sing 147 n n C40 C41 DEF sing 148 n n C40 H401 DEF sing 149 n n C40 H402 DEF sing 150 n n C41 C42 DEF sing 151 n n C41 H411 DEF sing 152 n n C41 H412 DEF sing 153 n n C42 C43 DEF sing 154 n n C42 H421 DEF sing 155 n n C42 H422 DEF sing 156 n n C43 N44 DEF sing 157 n n C43 H431 DEF sing 158 n n C43 H432 DEF sing 159 n n N44 O45 DEF sing 160 n n N44 H44N DEF sing 161 n n O45 S46 DEF sing 162 n n S46 O47 DEF doub 163 n n S46 O48 DEF doub 164 n n S46 C49 DEF sing 165 n n C49 H491 DEF sing 166 n n C49 H492 DEF sing 167 n n C49 H493 DEF sing 168 n n # _atom_sites.entry_id 5GGX _atom_sites.fract_transf_matrix[1][1] 0.005232 _atom_sites.fract_transf_matrix[1][2] 0.00302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DEF A 1 401 1 DEF DEF . F 2 DEF B 1 401 1 DEF DEF . G 2 DEF C 1 401 1 DEF DEF . H 2 DEF D 1 401 1 DEF DEF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE DEF . . . G 2 107.613 -10.582 35.637 1 59.55 ? FE DEF 401 C 1 HETATM 2 O O11 DEF . . . G 2 106.375 -10.383 34.118 1 88.83 ? O11 DEF 401 C 1 HETATM 3 O O12 DEF . . . G 2 107.518 -8.515 35.914 1 99.02 ? O12 DEF 401 C 1 HETATM 4 O O21 DEF . . . G 2 106.16 -10.693 37.033 1 110.37 ? O21 DEF 401 C 1 HETATM 5 O O22 DEF . . . G 2 108.447 -12.354 36.403 1 86.86 ? O22 DEF 401 C 1 HETATM 6 O O31 DEF . . . G 2 108.255 -11.578 34.17 1 100.75 ? O31 DEF 401 C 1 HETATM 7 O O32 DEF . . . G 2 109.003 -9.607 36.183 1 81.71 ? O32 DEF 401 C 1 HETATM 8 N N11 DEF . . . G 2 105.9 -9.073 34.2 1 86.03 ? N11 DEF 401 C 1 HETATM 9 C C11 DEF . . . G 2 106.088 -8.313 35.473 1 92.62 ? C11 DEF 401 C 1 HETATM 10 C C12 DEF . . . G 2 105.084 -7.869 36.297 1 100.38 ? C12 DEF 401 C 1 HETATM 11 C C13 DEF . . . G 2 103.627 -7.838 35.823 1 104.78 ? C13 DEF 401 C 1 HETATM 12 C C14 DEF . . . G 2 102.877 -9.162 36.022 1 103.2 ? C14 DEF 401 C 1 HETATM 13 O O13 DEF . . . G 2 101.915 -9.179 36.772 1 108.03 ? O13 DEF 401 C 1 HETATM 14 N N12 DEF . . . G 2 103.305 -10.349 35.318 1 90.19 ? N12 DEF 401 C 1 HETATM 15 C C15 DEF . . . G 2 102.652 -11.635 35.428 1 85.27 ? C15 DEF 401 C 1 HETATM 16 C C16 DEF . . . G 2 102.448 -12.127 36.874 1 86.83 ? C16 DEF 401 C 1 HETATM 17 C C18 DEF . . . G 2 104.214 -11.873 38.698 1 81.93 ? C18 DEF 401 C 1 HETATM 18 C C17 DEF . . . G 2 103.719 -12.719 37.509 1 87.46 ? C17 DEF 401 C 1 HETATM 19 C C19 DEF . . . G 2 105.708 -12.097 38.999 1 82.04 ? C19 DEF 401 C 1 HETATM 20 N N21 DEF . . . G 2 106.515 -11.762 37.843 1 90.42 ? N21 DEF 401 C 1 HETATM 21 C C21 DEF . . . G 2 107.373 -12.774 37.224 1 85.11 ? C21 DEF 401 C 1 HETATM 22 C C22 DEF . . . G 2 107.381 -14.042 37.737 1 86.39 ? C22 DEF 401 C 1 HETATM 23 C C23 DEF . . . G 2 108.149 -15.166 37.025 1 83.95 ? C23 DEF 401 C 1 HETATM 24 C C24 DEF . . . G 2 107.858 -15.245 35.524 1 73.57 ? C24 DEF 401 C 1 HETATM 25 O O23 DEF . . . G 2 106.749 -14.963 35.104 1 79.55 ? O23 DEF 401 C 1 HETATM 26 N N22 DEF . . . G 2 108.903 -15.653 34.623 1 53.66 ? N22 DEF 401 C 1 HETATM 27 C C25 DEF . . . G 2 108.653 -15.739 33.207 1 49.7 ? C25 DEF 401 C 1 HETATM 28 C C26 DEF . . . G 2 108.603 -14.343 32.562 1 46.59 ? C26 DEF 401 C 1 HETATM 29 C C27 DEF . . . G 2 109.992 -13.686 32.467 1 43.75 ? C27 DEF 401 C 1 HETATM 30 C C28 DEF . . . G 2 109.934 -12.296 31.808 1 41.17 ? C28 DEF 401 C 1 HETATM 31 C C29 DEF . . . G 2 110.526 -11.194 32.706 1 37.89 ? C29 DEF 401 C 1 HETATM 32 N N31 DEF . . . G 2 109.703 -10.98 33.877 1 29.7 ? N31 DEF 401 C 1 HETATM 33 C C31 DEF . . . G 2 110.114 -9.978 35.295 1 74.83 ? C31 DEF 401 C 1 HETATM 34 C C32 DEF . . . G 2 111.399 -9.941 35.745 1 71.15 ? C32 DEF 401 C 1 HETATM 35 C C39 DEF . . . G 2 105.646 -8.358 32.977 1 87.99 ? C39 DEF 401 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 35 #