data_5GHV # _model_server_result.job_id GAQk7V65HQKPaFYvWr_tNg _model_server_result.datetime_utc '2024-12-22 01:09:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ghv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 5GHV # _exptl.entry_id 5GHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.614 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-({1-[2-({3,5-dimethyl-4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}amino)pyrimidin-4-yl]-4-methyl-1H-pyrrol-3-yl}methyl)azetidin-3-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.99 _cell.angle_beta 90.01 _cell.angle_gamma 98.9 _cell.entry_id 5GHV _cell.length_a 40.269 _cell.length_b 41.501 _cell.length_c 85.091 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H36 N6 O2' _chem_comp.formula_weight 476.614 _chem_comp.id X5G _chem_comp.mon_nstd_flag . _chem_comp.name 1-({1-[2-({3,5-dimethyl-4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}amino)pyrimidin-4-yl]-4-methyl-1H-pyrrol-3-yl}methyl)azetidin-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAY X5G sing 376 n n CAM CAP X5G sing 377 n n CAM OAW X5G sing 378 n n CAG CAY X5G doub 379 n y CAG CBA X5G sing 380 n y NBG CAP X5G sing 381 n n NBG CAN X5G sing 382 n n NBG CAO X5G sing 383 n n CAY CBE X5G sing 384 n y NAV CBA X5G sing 385 n n NAV C2 X5G sing 386 n n CAN CAK X5G sing 387 n n CBA CAH X5G doub 388 n y CAK CAL X5G sing 389 n n CAO CAL X5G sing 390 n n CBE OAW X5G sing 391 n n CBE CAZ X5G doub 392 n y N1 C2 X5G doub 393 n y N1 C6 X5G sing 394 n y C2 N3 X5G sing 395 n y CAH CAZ X5G sing 396 n y C6 C5 X5G doub 397 n y CAZ CAC X5G sing 398 n n N3 C4 X5G doub 399 n y C5 C4 X5G sing 400 n y C4 NBI X5G sing 401 n n NBI CAJ X5G sing 402 n y NBI CAI X5G sing 403 n y CAJ CBB X5G doub 404 n y CAI CAX X5G doub 405 n y CBB CAX X5G sing 406 n y CBB CAQ X5G sing 407 n n CAX CAA X5G sing 408 n n CAQ NBH X5G sing 409 n n CAR CBF X5G sing 410 n n CAR NBH X5G sing 411 n n CBF CAS X5G sing 412 n n CBF OAD X5G sing 413 n n NBH CAS X5G sing 414 n n C5 H1 X5G sing 415 n n C6 H2 X5G sing 416 n n CAN H3 X5G sing 417 n n CAN H4 X5G sing 418 n n CAK H5 X5G sing 419 n n CAK H6 X5G sing 420 n n CAL H7 X5G sing 421 n n CAL H8 X5G sing 422 n n CAO H9 X5G sing 423 n n CAO H10 X5G sing 424 n n CAP H12 X5G sing 425 n n CAP H13 X5G sing 426 n n CAM H14 X5G sing 427 n n CAM H15 X5G sing 428 n n CAC H16 X5G sing 429 n n CAC H17 X5G sing 430 n n CAC H18 X5G sing 431 n n CAH H19 X5G sing 432 n n CAB H20 X5G sing 433 n n CAB H21 X5G sing 434 n n CAB H22 X5G sing 435 n n CAG H23 X5G sing 436 n n NAV H24 X5G sing 437 n n CAJ H25 X5G sing 438 n n CAI H26 X5G sing 439 n n CAA H27 X5G sing 440 n n CAA H28 X5G sing 441 n n CAA H29 X5G sing 442 n n CAQ H30 X5G sing 443 n n CAQ H31 X5G sing 444 n n CAS H33 X5G sing 445 n n CAS H34 X5G sing 446 n n CAR H35 X5G sing 447 n n CAR H36 X5G sing 448 n n CBF H37 X5G sing 449 n n OAD H38 X5G sing 450 n n # _atom_sites.entry_id 5GHV _atom_sites.fract_transf_matrix[1][1] 0.024833 _atom_sites.fract_transf_matrix[1][2] 0.003891 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02439 _atom_sites.fract_transf_matrix[2][3] -0.000004 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X5G A 1 701 701 X5G X5G . D 2 X5G B 1 701 701 X5G X5G . E 3 HOH A 1 801 810 HOH HOH . E 3 HOH A 2 802 808 HOH HOH . E 3 HOH A 3 803 809 HOH HOH . E 3 HOH A 4 804 805 HOH HOH . E 3 HOH A 5 805 801 HOH HOH . E 3 HOH A 6 806 804 HOH HOH . E 3 HOH A 7 807 803 HOH HOH . E 3 HOH A 8 808 802 HOH HOH . E 3 HOH A 9 809 807 HOH HOH . E 3 HOH A 10 810 806 HOH HOH . F 3 HOH B 1 801 808 HOH HOH . F 3 HOH B 2 802 801 HOH HOH . F 3 HOH B 3 803 809 HOH HOH . F 3 HOH B 4 804 806 HOH HOH . F 3 HOH B 5 805 810 HOH HOH . F 3 HOH B 6 806 807 HOH HOH . F 3 HOH B 7 807 803 HOH HOH . F 3 HOH B 8 808 805 HOH HOH . F 3 HOH B 9 809 802 HOH HOH . F 3 HOH B 10 810 804 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X5G . . . C 2 -12.981 -12.387 1.137 1 42.74 ? C4 X5G 701 A 1 HETATM 2 C C5 X5G . . . C 2 -11.833 -13.092 0.963 1 42.61 ? C5 X5G 701 A 1 HETATM 3 C C6 X5G . . . C 2 -11.791 -14.051 0.003 1 42.65 ? C6 X5G 701 A 1 HETATM 4 N N1 X5G . . . C 2 -12.842 -14.271 -0.692 1 43.1 ? N1 X5G 701 A 1 HETATM 5 N N3 X5G . . . C 2 -14.03 -12.653 0.407 1 43.19 ? N3 X5G 701 A 1 HETATM 6 C CAN X5G . . . C 2 -21.961 -10.297 -0.825 1 55.93 ? CAN X5G 701 A 1 HETATM 7 C CAK X5G . . . C 2 -23.412 -9.897 -0.699 1 56.22 ? CAK X5G 701 A 1 HETATM 8 C CAL X5G . . . C 2 -24.114 -10.924 -1.561 1 56.23 ? CAL X5G 701 A 1 HETATM 9 C CAO X5G . . . C 2 -23.141 -12.086 -1.676 1 55.81 ? CAO X5G 701 A 1 HETATM 10 N NBG X5G . . . C 2 -22.002 -11.744 -0.835 1 55.16 ? NBG X5G 701 A 1 HETATM 11 C CAP X5G . . . C 2 -20.848 -12.031 -1.605 1 53.55 ? CAP X5G 701 A 1 HETATM 12 C CAM X5G . . . C 2 -19.863 -11.23 -0.913 1 52.31 ? CAM X5G 701 A 1 HETATM 13 O OAW X5G . . . C 2 -19.877 -12.302 -0.139 1 50.41 ? OAW X5G 701 A 1 HETATM 14 C CBE X5G . . . C 2 -18.664 -12.715 -0.408 1 49.58 ? CBE X5G 701 A 1 HETATM 15 C CAZ X5G . . . C 2 -17.628 -12.224 0.323 1 49.12 ? CAZ X5G 701 A 1 HETATM 16 C CAC X5G . . . C 2 -17.872 -11.247 1.441 1 49.29 ? CAC X5G 701 A 1 HETATM 17 C CAH X5G . . . C 2 -16.349 -12.61 0.049 1 48.76 ? CAH X5G 701 A 1 HETATM 18 C CAY X5G . . . C 2 -18.442 -13.581 -1.434 1 49.1 ? CAY X5G 701 A 1 HETATM 19 C CAB X5G . . . C 2 -19.568 -14.121 -2.256 1 49.11 ? CAB X5G 701 A 1 HETATM 20 C CAG X5G . . . C 2 -17.164 -13.978 -1.704 1 48.79 ? CAG X5G 701 A 1 HETATM 21 C CBA X5G . . . C 2 -16.138 -13.487 -0.954 1 48.05 ? CBA X5G 701 A 1 HETATM 22 N NAV X5G . . . C 2 -14.942 -13.863 -1.217 1 46.69 ? NAV X5G 701 A 1 HETATM 23 C C2 X5G . . . C 2 -13.928 -13.586 -0.487 1 44.43 ? C2 X5G 701 A 1 HETATM 24 N NBI X5G . . . C 2 -12.997 -11.516 2.095 1 42.57 ? NBI X5G 701 A 1 HETATM 25 C CAJ X5G . . . C 2 -14.056 -11.089 2.732 1 42.26 ? CAJ X5G 701 A 1 HETATM 26 C CAI X5G . . . C 2 -11.915 -11.044 2.648 1 42.39 ? CAI X5G 701 A 1 HETATM 27 C CAX X5G . . . C 2 -12.297 -10.258 3.602 1 42.27 ? CAX X5G 701 A 1 HETATM 28 C CAA X5G . . . C 2 -11.408 -9.446 4.5 1 42.27 ? CAA X5G 701 A 1 HETATM 29 C CBB X5G . . . C 2 -13.665 -10.273 3.65 1 42.13 ? CBB X5G 701 A 1 HETATM 30 C CAQ X5G . . . C 2 -14.601 -9.55 4.56 1 42.04 ? CAQ X5G 701 A 1 HETATM 31 N NBH X5G . . . C 2 -15.057 -10.469 5.577 1 41.99 ? NBH X5G 701 A 1 HETATM 32 C CAS X5G . . . C 2 -15.812 -11.575 5.04 1 42.2 ? CAS X5G 701 A 1 HETATM 33 C CAR X5G . . . C 2 -16.293 -10.011 6.155 1 42.19 ? CAR X5G 701 A 1 HETATM 34 C CBF X5G . . . C 2 -16.55 -11.46 6.328 1 42.44 ? CBF X5G 701 A 1 HETATM 35 O OAD X5G . . . C 2 -17.89 -11.681 6.121 1 42.61 ? OAD X5G 701 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 60 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #