data_5GHV
#
_model_server_result.job_id            ISeFTj6De1MyX9NaMtrJqQ 
_model_server_result.datetime_utc      '2024-12-22 01:03:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ghv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    5GHV 
#
_exptl.entry_id    5GHV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              476.614 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-({1-[2-({3,5-dimethyl-4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}amino)pyrimidin-4-yl]-4-methyl-1H-pyrrol-3-yl}methyl)azetidin-3-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.99 
_cell.angle_beta          90.01 
_cell.angle_gamma         98.9 
_cell.entry_id            5GHV 
_cell.length_a            40.269 
_cell.length_b            41.501 
_cell.length_c            85.091 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GHV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H36 N6 O2' 
_chem_comp.formula_weight    476.614 
_chem_comp.id                X5G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-({1-[2-({3,5-dimethyl-4-[2-(pyrrolidin-1-yl)ethoxy]phenyl}amino)pyrimidin-4-yl]-4-methyl-1H-pyrrol-3-yl}methyl)azetidin-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAY X5G sing 376 n n 
CAM CAP X5G sing 377 n n 
CAM OAW X5G sing 378 n n 
CAG CAY X5G doub 379 n y 
CAG CBA X5G sing 380 n y 
NBG CAP X5G sing 381 n n 
NBG CAN X5G sing 382 n n 
NBG CAO X5G sing 383 n n 
CAY CBE X5G sing 384 n y 
NAV CBA X5G sing 385 n n 
NAV C2 X5G sing 386 n n 
CAN CAK X5G sing 387 n n 
CBA CAH X5G doub 388 n y 
CAK CAL X5G sing 389 n n 
CAO CAL X5G sing 390 n n 
CBE OAW X5G sing 391 n n 
CBE CAZ X5G doub 392 n y 
N1 C2 X5G doub 393 n y 
N1 C6 X5G sing 394 n y 
C2 N3 X5G sing 395 n y 
CAH CAZ X5G sing 396 n y 
C6 C5 X5G doub 397 n y 
CAZ CAC X5G sing 398 n n 
N3 C4 X5G doub 399 n y 
C5 C4 X5G sing 400 n y 
C4 NBI X5G sing 401 n n 
NBI CAJ X5G sing 402 n y 
NBI CAI X5G sing 403 n y 
CAJ CBB X5G doub 404 n y 
CAI CAX X5G doub 405 n y 
CBB CAX X5G sing 406 n y 
CBB CAQ X5G sing 407 n n 
CAX CAA X5G sing 408 n n 
CAQ NBH X5G sing 409 n n 
CAR CBF X5G sing 410 n n 
CAR NBH X5G sing 411 n n 
CBF CAS X5G sing 412 n n 
CBF OAD X5G sing 413 n n 
NBH CAS X5G sing 414 n n 
C5 H1 X5G sing 415 n n 
C6 H2 X5G sing 416 n n 
CAN H3 X5G sing 417 n n 
CAN H4 X5G sing 418 n n 
CAK H5 X5G sing 419 n n 
CAK H6 X5G sing 420 n n 
CAL H7 X5G sing 421 n n 
CAL H8 X5G sing 422 n n 
CAO H9 X5G sing 423 n n 
CAO H10 X5G sing 424 n n 
CAP H12 X5G sing 425 n n 
CAP H13 X5G sing 426 n n 
CAM H14 X5G sing 427 n n 
CAM H15 X5G sing 428 n n 
CAC H16 X5G sing 429 n n 
CAC H17 X5G sing 430 n n 
CAC H18 X5G sing 431 n n 
CAH H19 X5G sing 432 n n 
CAB H20 X5G sing 433 n n 
CAB H21 X5G sing 434 n n 
CAB H22 X5G sing 435 n n 
CAG H23 X5G sing 436 n n 
NAV H24 X5G sing 437 n n 
CAJ H25 X5G sing 438 n n 
CAI H26 X5G sing 439 n n 
CAA H27 X5G sing 440 n n 
CAA H28 X5G sing 441 n n 
CAA H29 X5G sing 442 n n 
CAQ H30 X5G sing 443 n n 
CAQ H31 X5G sing 444 n n 
CAS H33 X5G sing 445 n n 
CAS H34 X5G sing 446 n n 
CAR H35 X5G sing 447 n n 
CAR H36 X5G sing 448 n n 
CBF H37 X5G sing 449 n n 
OAD H38 X5G sing 450 n n 
#
_atom_sites.entry_id                     5GHV 
_atom_sites.fract_transf_matrix[1][1]    0.024833 
_atom_sites.fract_transf_matrix[1][2]    0.003891 
_atom_sites.fract_transf_matrix[1][3]    0.000002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02439 
_atom_sites.fract_transf_matrix[2][3]    -0.000004 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011752 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X5G A 1 701 701 X5G X5G . 
D 2 X5G B 1 701 701 X5G X5G . 
E 3 HOH A 1 801 810 HOH HOH . 
E 3 HOH A 2 802 808 HOH HOH . 
E 3 HOH A 3 803 809 HOH HOH . 
E 3 HOH A 4 804 805 HOH HOH . 
E 3 HOH A 5 805 801 HOH HOH . 
E 3 HOH A 6 806 804 HOH HOH . 
E 3 HOH A 7 807 803 HOH HOH . 
E 3 HOH A 8 808 802 HOH HOH . 
E 3 HOH A 9 809 807 HOH HOH . 
E 3 HOH A 10 810 806 HOH HOH . 
F 3 HOH B 1 801 808 HOH HOH . 
F 3 HOH B 2 802 801 HOH HOH . 
F 3 HOH B 3 803 809 HOH HOH . 
F 3 HOH B 4 804 806 HOH HOH . 
F 3 HOH B 5 805 810 HOH HOH . 
F 3 HOH B 6 806 807 HOH HOH . 
F 3 HOH B 7 807 803 HOH HOH . 
F 3 HOH B 8 808 805 HOH HOH . 
F 3 HOH B 9 809 802 HOH HOH . 
F 3 HOH B 10 810 804 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 X5G . . . D 2 -21.536 -29.333 -41.231 1 49.03 ? C4 X5G 701 B 1 
HETATM 2 C C5 X5G . . . D 2 -22.679 -28.637 -41.447 1 50.43 ? C5 X5G 701 B 1 
HETATM 3 C C6 X5G . . . D 2 -22.696 -27.656 -42.404 1 51.56 ? C6 X5G 701 B 1 
HETATM 4 N N1 X5G . . . D 2 -21.614 -27.391 -43.06 1 51.65 ? N1 X5G 701 B 1 
HETATM 5 N N3 X5G . . . D 2 -20.453 -29.015 -41.913 1 49.13 ? N3 X5G 701 B 1 
HETATM 6 C CAN X5G . . . D 2 -11.636 -31.698 -43.419 1 56.94 ? CAN X5G 701 B 1 
HETATM 7 C CAK X5G . . . D 2 -10.325 -30.952 -43.293 1 57.2 ? CAK X5G 701 B 1 
HETATM 8 C CAL X5G . . . D 2 -10.714 -29.489 -43.273 1 57.07 ? CAL X5G 701 B 1 
HETATM 9 C CAO X5G . . . D 2 -12.22 -29.569 -43.283 1 57.06 ? CAO X5G 701 B 1 
HETATM 10 N NBG X5G . . . D 2 -12.409 -30.72 -44.124 1 56.4 ? NBG X5G 701 B 1 
HETATM 11 C CAP X5G . . . D 2 -13.81 -30.924 -44.027 1 55.26 ? CAP X5G 701 B 1 
HETATM 12 C CAM X5G . . . D 2 -14.335 -29.53 -44.182 1 54.19 ? CAM X5G 701 B 1 
HETATM 13 O OAW X5G . . . D 2 -14.444 -29.091 -42.949 1 52.21 ? OAW X5G 701 B 1 
HETATM 14 C CBE X5G . . . D 2 -15.702 -28.758 -43.06 1 51.28 ? CBE X5G 701 B 1 
HETATM 15 C CAZ X5G . . . D 2 -16.652 -29.308 -42.282 1 50.8 ? CAZ X5G 701 B 1 
HETATM 16 C CAC X5G . . . D 2 -16.263 -30.316 -41.263 1 50.68 ? CAC X5G 701 B 1 
HETATM 17 C CAH X5G . . . D 2 -17.969 -28.948 -42.434 1 50.59 ? CAH X5G 701 B 1 
HETATM 18 C CAY X5G . . . D 2 -16.042 -27.849 -44.011 1 50.94 ? CAY X5G 701 B 1 
HETATM 19 C CAB X5G . . . D 2 -14.949 -27.261 -44.852 1 50.81 ? CAB X5G 701 B 1 
HETATM 20 C CAG X5G . . . D 2 -17.356 -27.459 -44.171 1 50.54 ? CAG X5G 701 B 1 
HETATM 21 C CBA X5G . . . D 2 -18.316 -28.027 -43.375 1 50.26 ? CBA X5G 701 B 1 
HETATM 22 N NAV X5G . . . D 2 -19.544 -27.678 -43.538 1 49.9 ? NAV X5G 701 B 1 
HETATM 23 C C2 X5G . . . D 2 -20.525 -28.058 -42.814 1 49.93 ? C2 X5G 701 B 1 
HETATM 24 N NBI X5G . . . D 2 -21.554 -30.196 -40.262 1 48.32 ? NBI X5G 701 B 1 
HETATM 25 C CAJ X5G . . . D 2 -20.491 -30.649 -39.667 1 47.58 ? CAJ X5G 701 B 1 
HETATM 26 C CAI X5G . . . D 2 -22.608 -30.618 -39.615 1 48.04 ? CAI X5G 701 B 1 
HETATM 27 C CAX X5G . . . D 2 -22.198 -31.396 -38.662 1 47.5 ? CAX X5G 701 B 1 
HETATM 28 C CAA X5G . . . D 2 -23.079 -32.134 -37.702 1 47.53 ? CAA X5G 701 B 1 
HETATM 29 C CBB X5G . . . D 2 -20.84 -31.423 -38.689 1 47.26 ? CBB X5G 701 B 1 
HETATM 30 C CAQ X5G . . . D 2 -19.887 -32.155 -37.796 1 46.57 ? CAQ X5G 701 B 1 
HETATM 31 N NBH X5G . . . D 2 -19.474 -31.225 -36.769 1 45.83 ? NBH X5G 701 B 1 
HETATM 32 C CAS X5G . . . D 2 -18.164 -31.59 -36.312 1 45.98 ? CAS X5G 701 B 1 
HETATM 33 C CAR X5G . . . D 2 -18.971 -30.018 -37.385 1 45.84 ? CAR X5G 701 B 1 
HETATM 34 C CBF X5G . . . D 2 -17.59 -30.431 -37.047 1 46.01 ? CBF X5G 701 B 1 
HETATM 35 O OAD X5G . . . D 2 -17.094 -29.543 -36.108 1 45.58 ? OAD X5G 701 B 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#