data_5GI7
#
_model_server_result.job_id            EbedHoMsTO3-ElOCRZlTvg 
_model_server_result.datetime_utc      '2024-11-01 22:23:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5GI7 
#
_exptl.entry_id    5GI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              152.235 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GI7 
_cell.length_a            43.985 
_cell.length_b            56.438 
_cell.length_c            83.616 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H8 O2 S2' 
_chem_comp.formula_weight    152.235 
_chem_comp.id                D1D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 D1D sing 194 n n 
S1 S4 D1D sing 195 n n 
C1 C2 D1D sing 196 n n 
C1 H1C1 D1D sing 197 n n 
C1 H1C2 D1D sing 198 n n 
C2 O2 D1D sing 199 n n 
C2 C3 D1D sing 200 n n 
C2 H2 D1D sing 201 n n 
O2 HA D1D sing 202 n n 
C3 O3 D1D sing 203 n n 
C3 C4 D1D sing 204 n n 
C3 H3 D1D sing 205 n n 
O3 HB D1D sing 206 n n 
C4 S4 D1D sing 207 n n 
C4 H4C1 D1D sing 208 n n 
C4 H4C2 D1D sing 209 n n 
#
_atom_sites.entry_id                     5GI7 
_atom_sites.fract_transf_matrix[1][1]    0.022735 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017719 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 COA A 1 301 1 COA COA . 
C 3 54W A 1 302 1 54W 54W . 
D 3 54W A 1 303 2 54W 54W . 
E 4 D1D A 1 304 1 D1D D1D . 
F 5 HOH A 1 401 188 HOH HOH . 
F 5 HOH A 2 402 256 HOH HOH . 
F 5 HOH A 3 403 214 HOH HOH . 
F 5 HOH A 4 404 196 HOH HOH . 
F 5 HOH A 5 405 261 HOH HOH . 
F 5 HOH A 6 406 155 HOH HOH . 
F 5 HOH A 7 407 199 HOH HOH . 
F 5 HOH A 8 408 208 HOH HOH . 
F 5 HOH A 9 409 238 HOH HOH . 
F 5 HOH A 10 410 163 HOH HOH . 
F 5 HOH A 11 411 147 HOH HOH . 
F 5 HOH A 12 412 172 HOH HOH . 
F 5 HOH A 13 413 176 HOH HOH . 
F 5 HOH A 14 414 48 HOH HOH . 
F 5 HOH A 15 415 129 HOH HOH . 
F 5 HOH A 16 416 193 HOH HOH . 
F 5 HOH A 17 417 74 HOH HOH . 
F 5 HOH A 18 418 262 HOH HOH . 
F 5 HOH A 19 419 120 HOH HOH . 
F 5 HOH A 20 420 26 HOH HOH . 
F 5 HOH A 21 421 44 HOH HOH . 
F 5 HOH A 22 422 97 HOH HOH . 
F 5 HOH A 23 423 25 HOH HOH . 
F 5 HOH A 24 424 112 HOH HOH . 
F 5 HOH A 25 425 113 HOH HOH . 
F 5 HOH A 26 426 197 HOH HOH . 
F 5 HOH A 27 427 4 HOH HOH . 
F 5 HOH A 28 428 39 HOH HOH . 
F 5 HOH A 29 429 106 HOH HOH . 
F 5 HOH A 30 430 162 HOH HOH . 
F 5 HOH A 31 431 42 HOH HOH . 
F 5 HOH A 32 432 212 HOH HOH . 
F 5 HOH A 33 433 251 HOH HOH . 
F 5 HOH A 34 434 79 HOH HOH . 
F 5 HOH A 35 435 81 HOH HOH . 
F 5 HOH A 36 436 2 HOH HOH . 
F 5 HOH A 37 437 115 HOH HOH . 
F 5 HOH A 38 438 134 HOH HOH . 
F 5 HOH A 39 439 67 HOH HOH . 
F 5 HOH A 40 440 20 HOH HOH . 
F 5 HOH A 41 441 19 HOH HOH . 
F 5 HOH A 42 442 258 HOH HOH . 
F 5 HOH A 43 443 40 HOH HOH . 
F 5 HOH A 44 444 217 HOH HOH . 
F 5 HOH A 45 445 38 HOH HOH . 
F 5 HOH A 46 446 133 HOH HOH . 
F 5 HOH A 47 447 66 HOH HOH . 
F 5 HOH A 48 448 29 HOH HOH . 
F 5 HOH A 49 449 104 HOH HOH . 
F 5 HOH A 50 450 116 HOH HOH . 
F 5 HOH A 51 451 158 HOH HOH . 
F 5 HOH A 52 452 86 HOH HOH . 
F 5 HOH A 53 453 96 HOH HOH . 
F 5 HOH A 54 454 5 HOH HOH . 
F 5 HOH A 55 455 13 HOH HOH . 
F 5 HOH A 56 456 153 HOH HOH . 
F 5 HOH A 57 457 50 HOH HOH . 
F 5 HOH A 58 458 230 HOH HOH . 
F 5 HOH A 59 459 175 HOH HOH . 
F 5 HOH A 60 460 6 HOH HOH . 
F 5 HOH A 61 461 270 HOH HOH . 
F 5 HOH A 62 462 87 HOH HOH . 
F 5 HOH A 63 463 100 HOH HOH . 
F 5 HOH A 64 464 61 HOH HOH . 
F 5 HOH A 65 465 11 HOH HOH . 
F 5 HOH A 66 466 194 HOH HOH . 
F 5 HOH A 67 467 124 HOH HOH . 
F 5 HOH A 68 468 7 HOH HOH . 
F 5 HOH A 69 469 46 HOH HOH . 
F 5 HOH A 70 470 52 HOH HOH . 
F 5 HOH A 71 471 184 HOH HOH . 
F 5 HOH A 72 472 49 HOH HOH . 
F 5 HOH A 73 473 219 HOH HOH . 
F 5 HOH A 74 474 53 HOH HOH . 
F 5 HOH A 75 475 226 HOH HOH . 
F 5 HOH A 76 476 36 HOH HOH . 
F 5 HOH A 77 477 32 HOH HOH . 
F 5 HOH A 78 478 21 HOH HOH . 
F 5 HOH A 79 479 249 HOH HOH . 
F 5 HOH A 80 480 89 HOH HOH . 
F 5 HOH A 81 481 103 HOH HOH . 
F 5 HOH A 82 482 218 HOH HOH . 
F 5 HOH A 83 483 180 HOH HOH . 
F 5 HOH A 84 484 27 HOH HOH . 
F 5 HOH A 85 485 234 HOH HOH . 
F 5 HOH A 86 486 205 HOH HOH . 
F 5 HOH A 87 487 9 HOH HOH . 
F 5 HOH A 88 488 203 HOH HOH . 
F 5 HOH A 89 489 210 HOH HOH . 
F 5 HOH A 90 490 70 HOH HOH . 
F 5 HOH A 91 491 257 HOH HOH . 
F 5 HOH A 92 492 57 HOH HOH . 
F 5 HOH A 93 493 58 HOH HOH . 
F 5 HOH A 94 494 10 HOH HOH . 
F 5 HOH A 95 495 14 HOH HOH . 
F 5 HOH A 96 496 84 HOH HOH . 
F 5 HOH A 97 497 128 HOH HOH . 
F 5 HOH A 98 498 209 HOH HOH . 
F 5 HOH A 99 499 91 HOH HOH . 
F 5 HOH A 100 500 149 HOH HOH . 
F 5 HOH A 101 501 264 HOH HOH . 
F 5 HOH A 102 502 8 HOH HOH . 
F 5 HOH A 103 503 181 HOH HOH . 
F 5 HOH A 104 504 24 HOH HOH . 
F 5 HOH A 105 505 127 HOH HOH . 
F 5 HOH A 106 506 138 HOH HOH . 
F 5 HOH A 107 507 132 HOH HOH . 
F 5 HOH A 108 508 182 HOH HOH . 
F 5 HOH A 109 509 62 HOH HOH . 
F 5 HOH A 110 510 3 HOH HOH . 
F 5 HOH A 111 511 236 HOH HOH . 
F 5 HOH A 112 512 31 HOH HOH . 
F 5 HOH A 113 513 141 HOH HOH . 
F 5 HOH A 114 514 60 HOH HOH . 
F 5 HOH A 115 515 43 HOH HOH . 
F 5 HOH A 116 516 177 HOH HOH . 
F 5 HOH A 117 517 47 HOH HOH . 
F 5 HOH A 118 518 65 HOH HOH . 
F 5 HOH A 119 519 34 HOH HOH . 
F 5 HOH A 120 520 170 HOH HOH . 
F 5 HOH A 121 521 105 HOH HOH . 
F 5 HOH A 122 522 255 HOH HOH . 
F 5 HOH A 123 523 54 HOH HOH . 
F 5 HOH A 124 524 73 HOH HOH . 
F 5 HOH A 125 525 30 HOH HOH . 
F 5 HOH A 126 526 265 HOH HOH . 
F 5 HOH A 127 527 93 HOH HOH . 
F 5 HOH A 128 528 228 HOH HOH . 
F 5 HOH A 129 529 55 HOH HOH . 
F 5 HOH A 130 530 111 HOH HOH . 
F 5 HOH A 131 531 16 HOH HOH . 
F 5 HOH A 132 532 108 HOH HOH . 
F 5 HOH A 133 533 267 HOH HOH . 
F 5 HOH A 134 534 266 HOH HOH . 
F 5 HOH A 135 535 71 HOH HOH . 
F 5 HOH A 136 536 186 HOH HOH . 
F 5 HOH A 137 537 75 HOH HOH . 
F 5 HOH A 138 538 125 HOH HOH . 
F 5 HOH A 139 539 17 HOH HOH . 
F 5 HOH A 140 540 260 HOH HOH . 
F 5 HOH A 141 541 110 HOH HOH . 
F 5 HOH A 142 542 130 HOH HOH . 
F 5 HOH A 143 543 119 HOH HOH . 
F 5 HOH A 144 544 174 HOH HOH . 
F 5 HOH A 145 545 1 HOH HOH . 
F 5 HOH A 146 546 15 HOH HOH . 
F 5 HOH A 147 547 240 HOH HOH . 
F 5 HOH A 148 548 122 HOH HOH . 
F 5 HOH A 149 549 12 HOH HOH . 
F 5 HOH A 150 550 164 HOH HOH . 
F 5 HOH A 151 551 95 HOH HOH . 
F 5 HOH A 152 552 88 HOH HOH . 
F 5 HOH A 153 553 169 HOH HOH . 
F 5 HOH A 154 554 151 HOH HOH . 
F 5 HOH A 155 555 35 HOH HOH . 
F 5 HOH A 156 556 213 HOH HOH . 
F 5 HOH A 157 557 143 HOH HOH . 
F 5 HOH A 158 558 178 HOH HOH . 
F 5 HOH A 159 559 250 HOH HOH . 
F 5 HOH A 160 560 22 HOH HOH . 
F 5 HOH A 161 561 77 HOH HOH . 
F 5 HOH A 162 562 144 HOH HOH . 
F 5 HOH A 163 563 92 HOH HOH . 
F 5 HOH A 164 564 167 HOH HOH . 
F 5 HOH A 165 565 101 HOH HOH . 
F 5 HOH A 166 566 118 HOH HOH . 
F 5 HOH A 167 567 18 HOH HOH . 
F 5 HOH A 168 568 41 HOH HOH . 
F 5 HOH A 169 569 45 HOH HOH . 
F 5 HOH A 170 570 201 HOH HOH . 
F 5 HOH A 171 571 148 HOH HOH . 
F 5 HOH A 172 572 187 HOH HOH . 
F 5 HOH A 173 573 68 HOH HOH . 
F 5 HOH A 174 574 157 HOH HOH . 
F 5 HOH A 175 575 99 HOH HOH . 
F 5 HOH A 176 576 28 HOH HOH . 
F 5 HOH A 177 577 102 HOH HOH . 
F 5 HOH A 178 578 237 HOH HOH . 
F 5 HOH A 179 579 123 HOH HOH . 
F 5 HOH A 180 580 198 HOH HOH . 
F 5 HOH A 181 581 37 HOH HOH . 
F 5 HOH A 182 582 33 HOH HOH . 
F 5 HOH A 183 583 131 HOH HOH . 
F 5 HOH A 184 584 195 HOH HOH . 
F 5 HOH A 185 585 190 HOH HOH . 
F 5 HOH A 186 586 121 HOH HOH . 
F 5 HOH A 187 587 231 HOH HOH . 
F 5 HOH A 188 588 202 HOH HOH . 
F 5 HOH A 189 589 221 HOH HOH . 
F 5 HOH A 190 590 140 HOH HOH . 
F 5 HOH A 191 591 204 HOH HOH . 
F 5 HOH A 192 592 90 HOH HOH . 
F 5 HOH A 193 593 192 HOH HOH . 
F 5 HOH A 194 594 23 HOH HOH . 
F 5 HOH A 195 595 98 HOH HOH . 
F 5 HOH A 196 596 83 HOH HOH . 
F 5 HOH A 197 597 189 HOH HOH . 
F 5 HOH A 198 598 215 HOH HOH . 
F 5 HOH A 199 599 263 HOH HOH . 
F 5 HOH A 200 600 94 HOH HOH . 
F 5 HOH A 201 601 227 HOH HOH . 
F 5 HOH A 202 602 168 HOH HOH . 
F 5 HOH A 203 603 179 HOH HOH . 
F 5 HOH A 204 604 80 HOH HOH . 
F 5 HOH A 205 605 51 HOH HOH . 
F 5 HOH A 206 606 159 HOH HOH . 
F 5 HOH A 207 607 244 HOH HOH . 
F 5 HOH A 208 608 233 HOH HOH . 
F 5 HOH A 209 609 142 HOH HOH . 
F 5 HOH A 210 610 223 HOH HOH . 
F 5 HOH A 211 611 154 HOH HOH . 
F 5 HOH A 212 612 253 HOH HOH . 
F 5 HOH A 213 613 76 HOH HOH . 
F 5 HOH A 214 614 137 HOH HOH . 
F 5 HOH A 215 615 271 HOH HOH . 
F 5 HOH A 216 616 185 HOH HOH . 
F 5 HOH A 217 617 207 HOH HOH . 
F 5 HOH A 218 618 224 HOH HOH . 
F 5 HOH A 219 619 56 HOH HOH . 
F 5 HOH A 220 620 173 HOH HOH . 
F 5 HOH A 221 621 59 HOH HOH . 
F 5 HOH A 222 622 161 HOH HOH . 
F 5 HOH A 223 623 107 HOH HOH . 
F 5 HOH A 224 624 126 HOH HOH . 
F 5 HOH A 225 625 259 HOH HOH . 
F 5 HOH A 226 626 241 HOH HOH . 
F 5 HOH A 227 627 64 HOH HOH . 
F 5 HOH A 228 628 254 HOH HOH . 
F 5 HOH A 229 629 229 HOH HOH . 
F 5 HOH A 230 630 146 HOH HOH . 
F 5 HOH A 231 631 183 HOH HOH . 
F 5 HOH A 232 632 216 HOH HOH . 
F 5 HOH A 233 633 117 HOH HOH . 
F 5 HOH A 234 634 191 HOH HOH . 
F 5 HOH A 235 635 82 HOH HOH . 
F 5 HOH A 236 636 63 HOH HOH . 
F 5 HOH A 237 637 252 HOH HOH . 
F 5 HOH A 238 638 247 HOH HOH . 
F 5 HOH A 239 639 85 HOH HOH . 
F 5 HOH A 240 640 139 HOH HOH . 
F 5 HOH A 241 641 165 HOH HOH . 
F 5 HOH A 242 642 272 HOH HOH . 
F 5 HOH A 243 643 206 HOH HOH . 
F 5 HOH A 244 644 243 HOH HOH . 
F 5 HOH A 245 645 246 HOH HOH . 
F 5 HOH A 246 646 72 HOH HOH . 
F 5 HOH A 247 647 109 HOH HOH . 
F 5 HOH A 248 648 232 HOH HOH . 
F 5 HOH A 249 649 268 HOH HOH . 
F 5 HOH A 250 650 150 HOH HOH . 
F 5 HOH A 251 651 200 HOH HOH . 
F 5 HOH A 252 652 248 HOH HOH . 
F 5 HOH A 253 653 160 HOH HOH . 
F 5 HOH A 254 654 220 HOH HOH . 
F 5 HOH A 255 655 78 HOH HOH . 
F 5 HOH A 256 656 211 HOH HOH . 
F 5 HOH A 257 657 225 HOH HOH . 
F 5 HOH A 258 658 114 HOH HOH . 
F 5 HOH A 259 659 239 HOH HOH . 
F 5 HOH A 260 660 135 HOH HOH . 
F 5 HOH A 261 661 156 HOH HOH . 
F 5 HOH A 262 662 152 HOH HOH . 
F 5 HOH A 263 663 242 HOH HOH . 
F 5 HOH A 264 664 222 HOH HOH . 
F 5 HOH A 265 665 166 HOH HOH . 
F 5 HOH A 266 666 145 HOH HOH . 
F 5 HOH A 267 667 269 HOH HOH . 
F 5 HOH A 268 668 171 HOH HOH . 
F 5 HOH A 269 669 235 HOH HOH . 
F 5 HOH A 270 670 136 HOH HOH . 
F 5 HOH A 271 671 69 HOH HOH . 
F 5 HOH A 272 672 245 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 D1D . . . E 4 43.101 79.146 20.744 1 12.35 ? S1 D1D 304 A 1 
HETATM 2 C C1 D1D . . . E 4 41.827 80.109 21.517 1 12.73 ? C1 D1D 304 A 1 
HETATM 3 C C2 D1D . . . E 4 42.15 81.582 21.617 1 12.18 ? C2 D1D 304 A 1 
HETATM 4 O O2 D1D . . . E 4 41.06 82.27 22.133 1 12.78 ? O2 D1D 304 A 1 
HETATM 5 C C3 D1D . . . E 4 43.325 81.888 22.505 1 12.15 ? C3 D1D 304 A 1 
HETATM 6 O O3 D1D . . . E 4 43.538 83.261 22.563 1 12.55 ? O3 D1D 304 A 1 
HETATM 7 C C4 D1D . . . E 4 44.586 81.229 22.045 1 12.38 ? C4 D1D 304 A 1 
HETATM 8 S S4 D1D . . . E 4 44.53 79.466 22.133 1 13.26 ? S4 D1D 304 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           8 
#