data_5GI8 # _model_server_result.job_id tFXqza7OBqNRi1hAmAV-4w _model_server_result.datetime_utc '2024-11-26 23:46:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5GI8 # _exptl.entry_id 5GI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,5S)-1,2-DITHIANE-4,5-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GI8 _cell.length_a 44.039 _cell.length_b 56.5 _cell.length_c 83.644 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id D1D _chem_comp.mon_nstd_flag . _chem_comp.name (4S,5S)-1,2-DITHIANE-4,5-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 D1D sing 196 n n S1 S4 D1D sing 197 n n C1 C2 D1D sing 198 n n C1 H1C1 D1D sing 199 n n C1 H1C2 D1D sing 200 n n C2 O2 D1D sing 201 n n C2 C3 D1D sing 202 n n C2 H2 D1D sing 203 n n O2 HA D1D sing 204 n n C3 O3 D1D sing 205 n n C3 C4 D1D sing 206 n n C3 H3 D1D sing 207 n n O3 HB D1D sing 208 n n C4 S4 D1D sing 209 n n C4 H4C1 D1D sing 210 n n C4 H4C2 D1D sing 211 n n # _atom_sites.entry_id 5GI8 _atom_sites.fract_transf_matrix[1][1] 0.022707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 301 1 COA COA . C 3 7DP A 1 302 1 7DP NPE . D 4 D1D A 1 303 1 D1D D1D . E 5 HOH A 1 401 218 HOH HOH . E 5 HOH A 2 402 173 HOH HOH . E 5 HOH A 3 403 164 HOH HOH . E 5 HOH A 4 404 45 HOH HOH . E 5 HOH A 5 405 110 HOH HOH . E 5 HOH A 6 406 194 HOH HOH . E 5 HOH A 7 407 80 HOH HOH . E 5 HOH A 8 408 77 HOH HOH . E 5 HOH A 9 409 51 HOH HOH . E 5 HOH A 10 410 106 HOH HOH . E 5 HOH A 11 411 65 HOH HOH . E 5 HOH A 12 412 69 HOH HOH . E 5 HOH A 13 413 223 HOH HOH . E 5 HOH A 14 414 189 HOH HOH . E 5 HOH A 15 415 196 HOH HOH . E 5 HOH A 16 416 180 HOH HOH . E 5 HOH A 17 417 78 HOH HOH . E 5 HOH A 18 418 123 HOH HOH . E 5 HOH A 19 419 136 HOH HOH . E 5 HOH A 20 420 130 HOH HOH . E 5 HOH A 21 421 21 HOH HOH . E 5 HOH A 22 422 144 HOH HOH . E 5 HOH A 23 423 48 HOH HOH . E 5 HOH A 24 424 193 HOH HOH . E 5 HOH A 25 425 97 HOH HOH . E 5 HOH A 26 426 216 HOH HOH . E 5 HOH A 27 427 2 HOH HOH . E 5 HOH A 28 428 79 HOH HOH . E 5 HOH A 29 429 213 HOH HOH . E 5 HOH A 30 430 47 HOH HOH . E 5 HOH A 31 431 56 HOH HOH . E 5 HOH A 32 432 1 HOH HOH . E 5 HOH A 33 433 100 HOH HOH . E 5 HOH A 34 434 175 HOH HOH . E 5 HOH A 35 435 24 HOH HOH . E 5 HOH A 36 436 166 HOH HOH . E 5 HOH A 37 437 19 HOH HOH . E 5 HOH A 38 438 125 HOH HOH . E 5 HOH A 39 439 209 HOH HOH . E 5 HOH A 40 440 159 HOH HOH . E 5 HOH A 41 441 206 HOH HOH . E 5 HOH A 42 442 168 HOH HOH . E 5 HOH A 43 443 3 HOH HOH . E 5 HOH A 44 444 37 HOH HOH . E 5 HOH A 45 445 50 HOH HOH . E 5 HOH A 46 446 161 HOH HOH . E 5 HOH A 47 447 121 HOH HOH . E 5 HOH A 48 448 59 HOH HOH . E 5 HOH A 49 449 8 HOH HOH . E 5 HOH A 50 450 91 HOH HOH . E 5 HOH A 51 451 36 HOH HOH . E 5 HOH A 52 452 131 HOH HOH . E 5 HOH A 53 453 17 HOH HOH . E 5 HOH A 54 454 94 HOH HOH . E 5 HOH A 55 455 30 HOH HOH . E 5 HOH A 56 456 28 HOH HOH . E 5 HOH A 57 457 52 HOH HOH . E 5 HOH A 58 458 26 HOH HOH . E 5 HOH A 59 459 54 HOH HOH . E 5 HOH A 60 460 172 HOH HOH . E 5 HOH A 61 461 13 HOH HOH . E 5 HOH A 62 462 4 HOH HOH . E 5 HOH A 63 463 39 HOH HOH . E 5 HOH A 64 464 29 HOH HOH . E 5 HOH A 65 465 101 HOH HOH . E 5 HOH A 66 466 7 HOH HOH . E 5 HOH A 67 467 34 HOH HOH . E 5 HOH A 68 468 85 HOH HOH . E 5 HOH A 69 469 55 HOH HOH . E 5 HOH A 70 470 10 HOH HOH . E 5 HOH A 71 471 84 HOH HOH . E 5 HOH A 72 472 150 HOH HOH . E 5 HOH A 73 473 210 HOH HOH . E 5 HOH A 74 474 64 HOH HOH . E 5 HOH A 75 475 217 HOH HOH . E 5 HOH A 76 476 49 HOH HOH . E 5 HOH A 77 477 68 HOH HOH . E 5 HOH A 78 478 63 HOH HOH . E 5 HOH A 79 479 199 HOH HOH . E 5 HOH A 80 480 107 HOH HOH . E 5 HOH A 81 481 86 HOH HOH . E 5 HOH A 82 482 102 HOH HOH . E 5 HOH A 83 483 18 HOH HOH . E 5 HOH A 84 484 162 HOH HOH . E 5 HOH A 85 485 87 HOH HOH . E 5 HOH A 86 486 58 HOH HOH . E 5 HOH A 87 487 225 HOH HOH . E 5 HOH A 88 488 35 HOH HOH . E 5 HOH A 89 489 66 HOH HOH . E 5 HOH A 90 490 204 HOH HOH . E 5 HOH A 91 491 5 HOH HOH . E 5 HOH A 92 492 99 HOH HOH . E 5 HOH A 93 493 176 HOH HOH . E 5 HOH A 94 494 75 HOH HOH . E 5 HOH A 95 495 38 HOH HOH . E 5 HOH A 96 496 46 HOH HOH . E 5 HOH A 97 497 156 HOH HOH . E 5 HOH A 98 498 14 HOH HOH . E 5 HOH A 99 499 115 HOH HOH . E 5 HOH A 100 500 15 HOH HOH . E 5 HOH A 101 501 53 HOH HOH . E 5 HOH A 102 502 40 HOH HOH . E 5 HOH A 103 503 134 HOH HOH . E 5 HOH A 104 504 192 HOH HOH . E 5 HOH A 105 505 20 HOH HOH . E 5 HOH A 106 506 6 HOH HOH . E 5 HOH A 107 507 11 HOH HOH . E 5 HOH A 108 508 153 HOH HOH . E 5 HOH A 109 509 186 HOH HOH . E 5 HOH A 110 510 137 HOH HOH . E 5 HOH A 111 511 152 HOH HOH . E 5 HOH A 112 512 57 HOH HOH . E 5 HOH A 113 513 224 HOH HOH . E 5 HOH A 114 514 149 HOH HOH . E 5 HOH A 115 515 105 HOH HOH . E 5 HOH A 116 516 27 HOH HOH . E 5 HOH A 117 517 43 HOH HOH . E 5 HOH A 118 518 128 HOH HOH . E 5 HOH A 119 519 108 HOH HOH . E 5 HOH A 120 520 71 HOH HOH . E 5 HOH A 121 521 188 HOH HOH . E 5 HOH A 122 522 120 HOH HOH . E 5 HOH A 123 523 111 HOH HOH . E 5 HOH A 124 524 12 HOH HOH . E 5 HOH A 125 525 98 HOH HOH . E 5 HOH A 126 526 124 HOH HOH . E 5 HOH A 127 527 139 HOH HOH . E 5 HOH A 128 528 127 HOH HOH . E 5 HOH A 129 529 60 HOH HOH . E 5 HOH A 130 530 16 HOH HOH . E 5 HOH A 131 531 33 HOH HOH . E 5 HOH A 132 532 61 HOH HOH . E 5 HOH A 133 533 32 HOH HOH . E 5 HOH A 134 534 9 HOH HOH . E 5 HOH A 135 535 207 HOH HOH . E 5 HOH A 136 536 31 HOH HOH . E 5 HOH A 137 537 200 HOH HOH . E 5 HOH A 138 538 96 HOH HOH . E 5 HOH A 139 539 151 HOH HOH . E 5 HOH A 140 540 170 HOH HOH . E 5 HOH A 141 541 163 HOH HOH . E 5 HOH A 142 542 88 HOH HOH . E 5 HOH A 143 543 226 HOH HOH . E 5 HOH A 144 544 42 HOH HOH . E 5 HOH A 145 545 133 HOH HOH . E 5 HOH A 146 546 160 HOH HOH . E 5 HOH A 147 547 181 HOH HOH . E 5 HOH A 148 548 135 HOH HOH . E 5 HOH A 149 549 41 HOH HOH . E 5 HOH A 150 550 145 HOH HOH . E 5 HOH A 151 551 104 HOH HOH . E 5 HOH A 152 552 22 HOH HOH . E 5 HOH A 153 553 165 HOH HOH . E 5 HOH A 154 554 25 HOH HOH . E 5 HOH A 155 555 23 HOH HOH . E 5 HOH A 156 556 197 HOH HOH . E 5 HOH A 157 557 138 HOH HOH . E 5 HOH A 158 558 179 HOH HOH . E 5 HOH A 159 559 129 HOH HOH . E 5 HOH A 160 560 119 HOH HOH . E 5 HOH A 161 561 117 HOH HOH . E 5 HOH A 162 562 185 HOH HOH . E 5 HOH A 163 563 114 HOH HOH . E 5 HOH A 164 564 113 HOH HOH . E 5 HOH A 165 565 146 HOH HOH . E 5 HOH A 166 566 167 HOH HOH . E 5 HOH A 167 567 158 HOH HOH . E 5 HOH A 168 568 112 HOH HOH . E 5 HOH A 169 569 183 HOH HOH . E 5 HOH A 170 570 178 HOH HOH . E 5 HOH A 171 571 201 HOH HOH . E 5 HOH A 172 572 126 HOH HOH . E 5 HOH A 173 573 122 HOH HOH . E 5 HOH A 174 574 202 HOH HOH . E 5 HOH A 175 575 140 HOH HOH . E 5 HOH A 176 576 44 HOH HOH . E 5 HOH A 177 577 195 HOH HOH . E 5 HOH A 178 578 184 HOH HOH . E 5 HOH A 179 579 219 HOH HOH . E 5 HOH A 180 580 174 HOH HOH . E 5 HOH A 181 581 147 HOH HOH . E 5 HOH A 182 582 222 HOH HOH . E 5 HOH A 183 583 76 HOH HOH . E 5 HOH A 184 584 72 HOH HOH . E 5 HOH A 185 585 157 HOH HOH . E 5 HOH A 186 586 155 HOH HOH . E 5 HOH A 187 587 62 HOH HOH . E 5 HOH A 188 588 198 HOH HOH . E 5 HOH A 189 589 70 HOH HOH . E 5 HOH A 190 590 182 HOH HOH . E 5 HOH A 191 591 95 HOH HOH . E 5 HOH A 192 592 109 HOH HOH . E 5 HOH A 193 593 73 HOH HOH . E 5 HOH A 194 594 67 HOH HOH . E 5 HOH A 195 595 169 HOH HOH . E 5 HOH A 196 596 83 HOH HOH . E 5 HOH A 197 597 154 HOH HOH . E 5 HOH A 198 598 93 HOH HOH . E 5 HOH A 199 599 221 HOH HOH . E 5 HOH A 200 600 191 HOH HOH . E 5 HOH A 201 601 74 HOH HOH . E 5 HOH A 202 602 89 HOH HOH . E 5 HOH A 203 603 208 HOH HOH . E 5 HOH A 204 604 171 HOH HOH . E 5 HOH A 205 605 177 HOH HOH . E 5 HOH A 206 606 132 HOH HOH . E 5 HOH A 207 607 141 HOH HOH . E 5 HOH A 208 608 190 HOH HOH . E 5 HOH A 209 609 82 HOH HOH . E 5 HOH A 210 610 116 HOH HOH . E 5 HOH A 211 611 220 HOH HOH . E 5 HOH A 212 612 203 HOH HOH . E 5 HOH A 213 613 81 HOH HOH . E 5 HOH A 214 614 227 HOH HOH . E 5 HOH A 215 615 214 HOH HOH . E 5 HOH A 216 616 187 HOH HOH . E 5 HOH A 217 617 143 HOH HOH . E 5 HOH A 218 618 205 HOH HOH . E 5 HOH A 219 619 103 HOH HOH . E 5 HOH A 220 620 118 HOH HOH . E 5 HOH A 221 621 211 HOH HOH . E 5 HOH A 222 622 142 HOH HOH . E 5 HOH A 223 623 215 HOH HOH . E 5 HOH A 224 624 148 HOH HOH . E 5 HOH A 225 625 92 HOH HOH . E 5 HOH A 226 626 90 HOH HOH . E 5 HOH A 227 627 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 D1D . . . D 4 44.626 79.547 22.128 1 16.36 ? S1 D1D 303 A 1 HETATM 2 C C1 D1D . . . D 4 44.661 81.314 22.005 1 16.34 ? C1 D1D 303 A 1 HETATM 3 C C2 D1D . . . D 4 43.395 81.981 22.451 1 15.78 ? C2 D1D 303 A 1 HETATM 4 O O2 D1D . . . D 4 43.606 83.358 22.478 1 16.17 ? O2 D1D 303 A 1 HETATM 5 C C3 D1D . . . D 4 42.217 81.663 21.578 1 15.99 ? C3 D1D 303 A 1 HETATM 6 O O3 D1D . . . D 4 41.129 82.334 22.112 1 16.38 ? O3 D1D 303 A 1 HETATM 7 C C4 D1D . . . D 4 41.909 80.191 21.48 1 15.92 ? C4 D1D 303 A 1 HETATM 8 S S4 D1D . . . D 4 43.211 79.248 20.724 1 15.47 ? S4 D1D 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #