data_5GI8
#
_model_server_result.job_id            EfTTGbkASQg1Db-GeqltDA 
_model_server_result.datetime_utc      '2024-11-01 18:31:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gi8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5GI8 
#
_exptl.entry_id    5GI8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              152.235 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GI8 
_cell.length_a            44.039 
_cell.length_b            56.5 
_cell.length_c            83.644 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H8 O2 S2' 
_chem_comp.formula_weight    152.235 
_chem_comp.id                D1D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 D1D sing 196 n n 
S1 S4 D1D sing 197 n n 
C1 C2 D1D sing 198 n n 
C1 H1C1 D1D sing 199 n n 
C1 H1C2 D1D sing 200 n n 
C2 O2 D1D sing 201 n n 
C2 C3 D1D sing 202 n n 
C2 H2 D1D sing 203 n n 
O2 HA D1D sing 204 n n 
C3 O3 D1D sing 205 n n 
C3 C4 D1D sing 206 n n 
C3 H3 D1D sing 207 n n 
O3 HB D1D sing 208 n n 
C4 S4 D1D sing 209 n n 
C4 H4C1 D1D sing 210 n n 
C4 H4C2 D1D sing 211 n n 
#
_atom_sites.entry_id                     5GI8 
_atom_sites.fract_transf_matrix[1][1]    0.022707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017699 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 COA A 1 301 1 COA COA . 
C 3 7DP A 1 302 1 7DP NPE . 
D 4 D1D A 1 303 1 D1D D1D . 
E 5 HOH A 1 401 218 HOH HOH . 
E 5 HOH A 2 402 173 HOH HOH . 
E 5 HOH A 3 403 164 HOH HOH . 
E 5 HOH A 4 404 45 HOH HOH . 
E 5 HOH A 5 405 110 HOH HOH . 
E 5 HOH A 6 406 194 HOH HOH . 
E 5 HOH A 7 407 80 HOH HOH . 
E 5 HOH A 8 408 77 HOH HOH . 
E 5 HOH A 9 409 51 HOH HOH . 
E 5 HOH A 10 410 106 HOH HOH . 
E 5 HOH A 11 411 65 HOH HOH . 
E 5 HOH A 12 412 69 HOH HOH . 
E 5 HOH A 13 413 223 HOH HOH . 
E 5 HOH A 14 414 189 HOH HOH . 
E 5 HOH A 15 415 196 HOH HOH . 
E 5 HOH A 16 416 180 HOH HOH . 
E 5 HOH A 17 417 78 HOH HOH . 
E 5 HOH A 18 418 123 HOH HOH . 
E 5 HOH A 19 419 136 HOH HOH . 
E 5 HOH A 20 420 130 HOH HOH . 
E 5 HOH A 21 421 21 HOH HOH . 
E 5 HOH A 22 422 144 HOH HOH . 
E 5 HOH A 23 423 48 HOH HOH . 
E 5 HOH A 24 424 193 HOH HOH . 
E 5 HOH A 25 425 97 HOH HOH . 
E 5 HOH A 26 426 216 HOH HOH . 
E 5 HOH A 27 427 2 HOH HOH . 
E 5 HOH A 28 428 79 HOH HOH . 
E 5 HOH A 29 429 213 HOH HOH . 
E 5 HOH A 30 430 47 HOH HOH . 
E 5 HOH A 31 431 56 HOH HOH . 
E 5 HOH A 32 432 1 HOH HOH . 
E 5 HOH A 33 433 100 HOH HOH . 
E 5 HOH A 34 434 175 HOH HOH . 
E 5 HOH A 35 435 24 HOH HOH . 
E 5 HOH A 36 436 166 HOH HOH . 
E 5 HOH A 37 437 19 HOH HOH . 
E 5 HOH A 38 438 125 HOH HOH . 
E 5 HOH A 39 439 209 HOH HOH . 
E 5 HOH A 40 440 159 HOH HOH . 
E 5 HOH A 41 441 206 HOH HOH . 
E 5 HOH A 42 442 168 HOH HOH . 
E 5 HOH A 43 443 3 HOH HOH . 
E 5 HOH A 44 444 37 HOH HOH . 
E 5 HOH A 45 445 50 HOH HOH . 
E 5 HOH A 46 446 161 HOH HOH . 
E 5 HOH A 47 447 121 HOH HOH . 
E 5 HOH A 48 448 59 HOH HOH . 
E 5 HOH A 49 449 8 HOH HOH . 
E 5 HOH A 50 450 91 HOH HOH . 
E 5 HOH A 51 451 36 HOH HOH . 
E 5 HOH A 52 452 131 HOH HOH . 
E 5 HOH A 53 453 17 HOH HOH . 
E 5 HOH A 54 454 94 HOH HOH . 
E 5 HOH A 55 455 30 HOH HOH . 
E 5 HOH A 56 456 28 HOH HOH . 
E 5 HOH A 57 457 52 HOH HOH . 
E 5 HOH A 58 458 26 HOH HOH . 
E 5 HOH A 59 459 54 HOH HOH . 
E 5 HOH A 60 460 172 HOH HOH . 
E 5 HOH A 61 461 13 HOH HOH . 
E 5 HOH A 62 462 4 HOH HOH . 
E 5 HOH A 63 463 39 HOH HOH . 
E 5 HOH A 64 464 29 HOH HOH . 
E 5 HOH A 65 465 101 HOH HOH . 
E 5 HOH A 66 466 7 HOH HOH . 
E 5 HOH A 67 467 34 HOH HOH . 
E 5 HOH A 68 468 85 HOH HOH . 
E 5 HOH A 69 469 55 HOH HOH . 
E 5 HOH A 70 470 10 HOH HOH . 
E 5 HOH A 71 471 84 HOH HOH . 
E 5 HOH A 72 472 150 HOH HOH . 
E 5 HOH A 73 473 210 HOH HOH . 
E 5 HOH A 74 474 64 HOH HOH . 
E 5 HOH A 75 475 217 HOH HOH . 
E 5 HOH A 76 476 49 HOH HOH . 
E 5 HOH A 77 477 68 HOH HOH . 
E 5 HOH A 78 478 63 HOH HOH . 
E 5 HOH A 79 479 199 HOH HOH . 
E 5 HOH A 80 480 107 HOH HOH . 
E 5 HOH A 81 481 86 HOH HOH . 
E 5 HOH A 82 482 102 HOH HOH . 
E 5 HOH A 83 483 18 HOH HOH . 
E 5 HOH A 84 484 162 HOH HOH . 
E 5 HOH A 85 485 87 HOH HOH . 
E 5 HOH A 86 486 58 HOH HOH . 
E 5 HOH A 87 487 225 HOH HOH . 
E 5 HOH A 88 488 35 HOH HOH . 
E 5 HOH A 89 489 66 HOH HOH . 
E 5 HOH A 90 490 204 HOH HOH . 
E 5 HOH A 91 491 5 HOH HOH . 
E 5 HOH A 92 492 99 HOH HOH . 
E 5 HOH A 93 493 176 HOH HOH . 
E 5 HOH A 94 494 75 HOH HOH . 
E 5 HOH A 95 495 38 HOH HOH . 
E 5 HOH A 96 496 46 HOH HOH . 
E 5 HOH A 97 497 156 HOH HOH . 
E 5 HOH A 98 498 14 HOH HOH . 
E 5 HOH A 99 499 115 HOH HOH . 
E 5 HOH A 100 500 15 HOH HOH . 
E 5 HOH A 101 501 53 HOH HOH . 
E 5 HOH A 102 502 40 HOH HOH . 
E 5 HOH A 103 503 134 HOH HOH . 
E 5 HOH A 104 504 192 HOH HOH . 
E 5 HOH A 105 505 20 HOH HOH . 
E 5 HOH A 106 506 6 HOH HOH . 
E 5 HOH A 107 507 11 HOH HOH . 
E 5 HOH A 108 508 153 HOH HOH . 
E 5 HOH A 109 509 186 HOH HOH . 
E 5 HOH A 110 510 137 HOH HOH . 
E 5 HOH A 111 511 152 HOH HOH . 
E 5 HOH A 112 512 57 HOH HOH . 
E 5 HOH A 113 513 224 HOH HOH . 
E 5 HOH A 114 514 149 HOH HOH . 
E 5 HOH A 115 515 105 HOH HOH . 
E 5 HOH A 116 516 27 HOH HOH . 
E 5 HOH A 117 517 43 HOH HOH . 
E 5 HOH A 118 518 128 HOH HOH . 
E 5 HOH A 119 519 108 HOH HOH . 
E 5 HOH A 120 520 71 HOH HOH . 
E 5 HOH A 121 521 188 HOH HOH . 
E 5 HOH A 122 522 120 HOH HOH . 
E 5 HOH A 123 523 111 HOH HOH . 
E 5 HOH A 124 524 12 HOH HOH . 
E 5 HOH A 125 525 98 HOH HOH . 
E 5 HOH A 126 526 124 HOH HOH . 
E 5 HOH A 127 527 139 HOH HOH . 
E 5 HOH A 128 528 127 HOH HOH . 
E 5 HOH A 129 529 60 HOH HOH . 
E 5 HOH A 130 530 16 HOH HOH . 
E 5 HOH A 131 531 33 HOH HOH . 
E 5 HOH A 132 532 61 HOH HOH . 
E 5 HOH A 133 533 32 HOH HOH . 
E 5 HOH A 134 534 9 HOH HOH . 
E 5 HOH A 135 535 207 HOH HOH . 
E 5 HOH A 136 536 31 HOH HOH . 
E 5 HOH A 137 537 200 HOH HOH . 
E 5 HOH A 138 538 96 HOH HOH . 
E 5 HOH A 139 539 151 HOH HOH . 
E 5 HOH A 140 540 170 HOH HOH . 
E 5 HOH A 141 541 163 HOH HOH . 
E 5 HOH A 142 542 88 HOH HOH . 
E 5 HOH A 143 543 226 HOH HOH . 
E 5 HOH A 144 544 42 HOH HOH . 
E 5 HOH A 145 545 133 HOH HOH . 
E 5 HOH A 146 546 160 HOH HOH . 
E 5 HOH A 147 547 181 HOH HOH . 
E 5 HOH A 148 548 135 HOH HOH . 
E 5 HOH A 149 549 41 HOH HOH . 
E 5 HOH A 150 550 145 HOH HOH . 
E 5 HOH A 151 551 104 HOH HOH . 
E 5 HOH A 152 552 22 HOH HOH . 
E 5 HOH A 153 553 165 HOH HOH . 
E 5 HOH A 154 554 25 HOH HOH . 
E 5 HOH A 155 555 23 HOH HOH . 
E 5 HOH A 156 556 197 HOH HOH . 
E 5 HOH A 157 557 138 HOH HOH . 
E 5 HOH A 158 558 179 HOH HOH . 
E 5 HOH A 159 559 129 HOH HOH . 
E 5 HOH A 160 560 119 HOH HOH . 
E 5 HOH A 161 561 117 HOH HOH . 
E 5 HOH A 162 562 185 HOH HOH . 
E 5 HOH A 163 563 114 HOH HOH . 
E 5 HOH A 164 564 113 HOH HOH . 
E 5 HOH A 165 565 146 HOH HOH . 
E 5 HOH A 166 566 167 HOH HOH . 
E 5 HOH A 167 567 158 HOH HOH . 
E 5 HOH A 168 568 112 HOH HOH . 
E 5 HOH A 169 569 183 HOH HOH . 
E 5 HOH A 170 570 178 HOH HOH . 
E 5 HOH A 171 571 201 HOH HOH . 
E 5 HOH A 172 572 126 HOH HOH . 
E 5 HOH A 173 573 122 HOH HOH . 
E 5 HOH A 174 574 202 HOH HOH . 
E 5 HOH A 175 575 140 HOH HOH . 
E 5 HOH A 176 576 44 HOH HOH . 
E 5 HOH A 177 577 195 HOH HOH . 
E 5 HOH A 178 578 184 HOH HOH . 
E 5 HOH A 179 579 219 HOH HOH . 
E 5 HOH A 180 580 174 HOH HOH . 
E 5 HOH A 181 581 147 HOH HOH . 
E 5 HOH A 182 582 222 HOH HOH . 
E 5 HOH A 183 583 76 HOH HOH . 
E 5 HOH A 184 584 72 HOH HOH . 
E 5 HOH A 185 585 157 HOH HOH . 
E 5 HOH A 186 586 155 HOH HOH . 
E 5 HOH A 187 587 62 HOH HOH . 
E 5 HOH A 188 588 198 HOH HOH . 
E 5 HOH A 189 589 70 HOH HOH . 
E 5 HOH A 190 590 182 HOH HOH . 
E 5 HOH A 191 591 95 HOH HOH . 
E 5 HOH A 192 592 109 HOH HOH . 
E 5 HOH A 193 593 73 HOH HOH . 
E 5 HOH A 194 594 67 HOH HOH . 
E 5 HOH A 195 595 169 HOH HOH . 
E 5 HOH A 196 596 83 HOH HOH . 
E 5 HOH A 197 597 154 HOH HOH . 
E 5 HOH A 198 598 93 HOH HOH . 
E 5 HOH A 199 599 221 HOH HOH . 
E 5 HOH A 200 600 191 HOH HOH . 
E 5 HOH A 201 601 74 HOH HOH . 
E 5 HOH A 202 602 89 HOH HOH . 
E 5 HOH A 203 603 208 HOH HOH . 
E 5 HOH A 204 604 171 HOH HOH . 
E 5 HOH A 205 605 177 HOH HOH . 
E 5 HOH A 206 606 132 HOH HOH . 
E 5 HOH A 207 607 141 HOH HOH . 
E 5 HOH A 208 608 190 HOH HOH . 
E 5 HOH A 209 609 82 HOH HOH . 
E 5 HOH A 210 610 116 HOH HOH . 
E 5 HOH A 211 611 220 HOH HOH . 
E 5 HOH A 212 612 203 HOH HOH . 
E 5 HOH A 213 613 81 HOH HOH . 
E 5 HOH A 214 614 227 HOH HOH . 
E 5 HOH A 215 615 214 HOH HOH . 
E 5 HOH A 216 616 187 HOH HOH . 
E 5 HOH A 217 617 143 HOH HOH . 
E 5 HOH A 218 618 205 HOH HOH . 
E 5 HOH A 219 619 103 HOH HOH . 
E 5 HOH A 220 620 118 HOH HOH . 
E 5 HOH A 221 621 211 HOH HOH . 
E 5 HOH A 222 622 142 HOH HOH . 
E 5 HOH A 223 623 215 HOH HOH . 
E 5 HOH A 224 624 148 HOH HOH . 
E 5 HOH A 225 625 92 HOH HOH . 
E 5 HOH A 226 626 90 HOH HOH . 
E 5 HOH A 227 627 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 D1D . . . D 4 44.626 79.547 22.128 1 16.36 ? S1 D1D 303 A 1 
HETATM 2 C C1 D1D . . . D 4 44.661 81.314 22.005 1 16.34 ? C1 D1D 303 A 1 
HETATM 3 C C2 D1D . . . D 4 43.395 81.981 22.451 1 15.78 ? C2 D1D 303 A 1 
HETATM 4 O O2 D1D . . . D 4 43.606 83.358 22.478 1 16.17 ? O2 D1D 303 A 1 
HETATM 5 C C3 D1D . . . D 4 42.217 81.663 21.578 1 15.99 ? C3 D1D 303 A 1 
HETATM 6 O O3 D1D . . . D 4 41.129 82.334 22.112 1 16.38 ? O3 D1D 303 A 1 
HETATM 7 C C4 D1D . . . D 4 41.909 80.191 21.48 1 15.92 ? C4 D1D 303 A 1 
HETATM 8 S S4 D1D . . . D 4 43.211 79.248 20.724 1 15.47 ? S4 D1D 303 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#