data_5GI9
#
_model_server_result.job_id            OD9DkCG366daEmmWAGRqAw 
_model_server_result.datetime_utc      '2024-11-01 22:38:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gi9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5GI9 
#
_exptl.entry_id    5GI9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              152.235 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GI9 
_cell.length_a            43.501 
_cell.length_b            56.464 
_cell.length_c            84.363 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GI9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H8 O2 S2' 
_chem_comp.formula_weight    152.235 
_chem_comp.id                D1D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 D1D sing 199 n n 
S1 S4 D1D sing 200 n n 
C1 C2 D1D sing 201 n n 
C1 H1C1 D1D sing 202 n n 
C1 H1C2 D1D sing 203 n n 
C2 O2 D1D sing 204 n n 
C2 C3 D1D sing 205 n n 
C2 H2 D1D sing 206 n n 
O2 HA D1D sing 207 n n 
C3 O3 D1D sing 208 n n 
C3 C4 D1D sing 209 n n 
C3 H3 D1D sing 210 n n 
O3 HB D1D sing 211 n n 
C4 S4 D1D sing 212 n n 
C4 H4C1 D1D sing 213 n n 
C4 H4C2 D1D sing 214 n n 
#
_atom_sites.entry_id                     5GI9 
_atom_sites.fract_transf_matrix[1][1]    0.022988 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011854 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 COA A 1 301 1 COA COA . 
C 3 7AN A 1 302 1 7AN NTS . 
D 3 7AN A 1 303 2 7AN NTS . 
E 4 D1D A 1 304 1 D1D D1D . 
F 5 HOH A 1 401 146 HOH HOH . 
F 5 HOH A 2 402 88 HOH HOH . 
F 5 HOH A 3 403 154 HOH HOH . 
F 5 HOH A 4 404 176 HOH HOH . 
F 5 HOH A 5 405 117 HOH HOH . 
F 5 HOH A 6 406 106 HOH HOH . 
F 5 HOH A 7 407 32 HOH HOH . 
F 5 HOH A 8 408 113 HOH HOH . 
F 5 HOH A 9 409 40 HOH HOH . 
F 5 HOH A 10 410 76 HOH HOH . 
F 5 HOH A 11 411 134 HOH HOH . 
F 5 HOH A 12 412 112 HOH HOH . 
F 5 HOH A 13 413 133 HOH HOH . 
F 5 HOH A 14 414 104 HOH HOH . 
F 5 HOH A 15 415 63 HOH HOH . 
F 5 HOH A 16 416 31 HOH HOH . 
F 5 HOH A 17 417 79 HOH HOH . 
F 5 HOH A 18 418 122 HOH HOH . 
F 5 HOH A 19 419 170 HOH HOH . 
F 5 HOH A 20 420 158 HOH HOH . 
F 5 HOH A 21 421 70 HOH HOH . 
F 5 HOH A 22 422 27 HOH HOH . 
F 5 HOH A 23 423 57 HOH HOH . 
F 5 HOH A 24 424 60 HOH HOH . 
F 5 HOH A 25 425 77 HOH HOH . 
F 5 HOH A 26 426 43 HOH HOH . 
F 5 HOH A 27 427 66 HOH HOH . 
F 5 HOH A 28 428 69 HOH HOH . 
F 5 HOH A 29 429 168 HOH HOH . 
F 5 HOH A 30 430 183 HOH HOH . 
F 5 HOH A 31 431 18 HOH HOH . 
F 5 HOH A 32 432 22 HOH HOH . 
F 5 HOH A 33 433 100 HOH HOH . 
F 5 HOH A 34 434 127 HOH HOH . 
F 5 HOH A 35 435 1 HOH HOH . 
F 5 HOH A 36 436 2 HOH HOH . 
F 5 HOH A 37 437 15 HOH HOH . 
F 5 HOH A 38 438 165 HOH HOH . 
F 5 HOH A 39 439 78 HOH HOH . 
F 5 HOH A 40 440 44 HOH HOH . 
F 5 HOH A 41 441 5 HOH HOH . 
F 5 HOH A 42 442 101 HOH HOH . 
F 5 HOH A 43 443 102 HOH HOH . 
F 5 HOH A 44 444 36 HOH HOH . 
F 5 HOH A 45 445 13 HOH HOH . 
F 5 HOH A 46 446 151 HOH HOH . 
F 5 HOH A 47 447 49 HOH HOH . 
F 5 HOH A 48 448 7 HOH HOH . 
F 5 HOH A 49 449 87 HOH HOH . 
F 5 HOH A 50 450 25 HOH HOH . 
F 5 HOH A 51 451 20 HOH HOH . 
F 5 HOH A 52 452 73 HOH HOH . 
F 5 HOH A 53 453 109 HOH HOH . 
F 5 HOH A 54 454 34 HOH HOH . 
F 5 HOH A 55 455 4 HOH HOH . 
F 5 HOH A 56 456 6 HOH HOH . 
F 5 HOH A 57 457 105 HOH HOH . 
F 5 HOH A 58 458 194 HOH HOH . 
F 5 HOH A 59 459 28 HOH HOH . 
F 5 HOH A 60 460 82 HOH HOH . 
F 5 HOH A 61 461 108 HOH HOH . 
F 5 HOH A 62 462 96 HOH HOH . 
F 5 HOH A 63 463 141 HOH HOH . 
F 5 HOH A 64 464 45 HOH HOH . 
F 5 HOH A 65 465 23 HOH HOH . 
F 5 HOH A 66 466 21 HOH HOH . 
F 5 HOH A 67 467 116 HOH HOH . 
F 5 HOH A 68 468 46 HOH HOH . 
F 5 HOH A 69 469 103 HOH HOH . 
F 5 HOH A 70 470 39 HOH HOH . 
F 5 HOH A 71 471 157 HOH HOH . 
F 5 HOH A 72 472 115 HOH HOH . 
F 5 HOH A 73 473 14 HOH HOH . 
F 5 HOH A 74 474 72 HOH HOH . 
F 5 HOH A 75 475 29 HOH HOH . 
F 5 HOH A 76 476 52 HOH HOH . 
F 5 HOH A 77 477 75 HOH HOH . 
F 5 HOH A 78 478 8 HOH HOH . 
F 5 HOH A 79 479 59 HOH HOH . 
F 5 HOH A 80 480 10 HOH HOH . 
F 5 HOH A 81 481 62 HOH HOH . 
F 5 HOH A 82 482 53 HOH HOH . 
F 5 HOH A 83 483 135 HOH HOH . 
F 5 HOH A 84 484 91 HOH HOH . 
F 5 HOH A 85 485 41 HOH HOH . 
F 5 HOH A 86 486 16 HOH HOH . 
F 5 HOH A 87 487 129 HOH HOH . 
F 5 HOH A 88 488 80 HOH HOH . 
F 5 HOH A 89 489 12 HOH HOH . 
F 5 HOH A 90 490 150 HOH HOH . 
F 5 HOH A 91 491 123 HOH HOH . 
F 5 HOH A 92 492 124 HOH HOH . 
F 5 HOH A 93 493 26 HOH HOH . 
F 5 HOH A 94 494 47 HOH HOH . 
F 5 HOH A 95 495 30 HOH HOH . 
F 5 HOH A 96 496 61 HOH HOH . 
F 5 HOH A 97 497 19 HOH HOH . 
F 5 HOH A 98 498 161 HOH HOH . 
F 5 HOH A 99 499 156 HOH HOH . 
F 5 HOH A 100 500 50 HOH HOH . 
F 5 HOH A 101 501 3 HOH HOH . 
F 5 HOH A 102 502 17 HOH HOH . 
F 5 HOH A 103 503 171 HOH HOH . 
F 5 HOH A 104 504 138 HOH HOH . 
F 5 HOH A 105 505 9 HOH HOH . 
F 5 HOH A 106 506 162 HOH HOH . 
F 5 HOH A 107 507 164 HOH HOH . 
F 5 HOH A 108 508 107 HOH HOH . 
F 5 HOH A 109 509 83 HOH HOH . 
F 5 HOH A 110 510 159 HOH HOH . 
F 5 HOH A 111 511 125 HOH HOH . 
F 5 HOH A 112 512 54 HOH HOH . 
F 5 HOH A 113 513 99 HOH HOH . 
F 5 HOH A 114 514 169 HOH HOH . 
F 5 HOH A 115 515 33 HOH HOH . 
F 5 HOH A 116 516 137 HOH HOH . 
F 5 HOH A 117 517 67 HOH HOH . 
F 5 HOH A 118 518 11 HOH HOH . 
F 5 HOH A 119 519 198 HOH HOH . 
F 5 HOH A 120 520 38 HOH HOH . 
F 5 HOH A 121 521 160 HOH HOH . 
F 5 HOH A 122 522 144 HOH HOH . 
F 5 HOH A 123 523 142 HOH HOH . 
F 5 HOH A 124 524 42 HOH HOH . 
F 5 HOH A 125 525 35 HOH HOH . 
F 5 HOH A 126 526 178 HOH HOH . 
F 5 HOH A 127 527 119 HOH HOH . 
F 5 HOH A 128 528 152 HOH HOH . 
F 5 HOH A 129 529 55 HOH HOH . 
F 5 HOH A 130 530 184 HOH HOH . 
F 5 HOH A 131 531 74 HOH HOH . 
F 5 HOH A 132 532 81 HOH HOH . 
F 5 HOH A 133 533 185 HOH HOH . 
F 5 HOH A 134 534 145 HOH HOH . 
F 5 HOH A 135 535 90 HOH HOH . 
F 5 HOH A 136 536 149 HOH HOH . 
F 5 HOH A 137 537 192 HOH HOH . 
F 5 HOH A 138 538 24 HOH HOH . 
F 5 HOH A 139 539 193 HOH HOH . 
F 5 HOH A 140 540 56 HOH HOH . 
F 5 HOH A 141 541 110 HOH HOH . 
F 5 HOH A 142 542 95 HOH HOH . 
F 5 HOH A 143 543 148 HOH HOH . 
F 5 HOH A 144 544 174 HOH HOH . 
F 5 HOH A 145 545 65 HOH HOH . 
F 5 HOH A 146 546 89 HOH HOH . 
F 5 HOH A 147 547 51 HOH HOH . 
F 5 HOH A 148 548 130 HOH HOH . 
F 5 HOH A 149 549 64 HOH HOH . 
F 5 HOH A 150 550 188 HOH HOH . 
F 5 HOH A 151 551 163 HOH HOH . 
F 5 HOH A 152 552 37 HOH HOH . 
F 5 HOH A 153 553 118 HOH HOH . 
F 5 HOH A 154 554 126 HOH HOH . 
F 5 HOH A 155 555 136 HOH HOH . 
F 5 HOH A 156 556 155 HOH HOH . 
F 5 HOH A 157 557 139 HOH HOH . 
F 5 HOH A 158 558 181 HOH HOH . 
F 5 HOH A 159 559 94 HOH HOH . 
F 5 HOH A 160 560 131 HOH HOH . 
F 5 HOH A 161 561 197 HOH HOH . 
F 5 HOH A 162 562 86 HOH HOH . 
F 5 HOH A 163 563 48 HOH HOH . 
F 5 HOH A 164 564 114 HOH HOH . 
F 5 HOH A 165 565 92 HOH HOH . 
F 5 HOH A 166 566 186 HOH HOH . 
F 5 HOH A 167 567 143 HOH HOH . 
F 5 HOH A 168 568 195 HOH HOH . 
F 5 HOH A 169 569 85 HOH HOH . 
F 5 HOH A 170 570 68 HOH HOH . 
F 5 HOH A 171 571 173 HOH HOH . 
F 5 HOH A 172 572 187 HOH HOH . 
F 5 HOH A 173 573 97 HOH HOH . 
F 5 HOH A 174 574 140 HOH HOH . 
F 5 HOH A 175 575 128 HOH HOH . 
F 5 HOH A 176 576 167 HOH HOH . 
F 5 HOH A 177 577 147 HOH HOH . 
F 5 HOH A 178 578 120 HOH HOH . 
F 5 HOH A 179 579 177 HOH HOH . 
F 5 HOH A 180 580 172 HOH HOH . 
F 5 HOH A 181 581 153 HOH HOH . 
F 5 HOH A 182 582 93 HOH HOH . 
F 5 HOH A 183 583 71 HOH HOH . 
F 5 HOH A 184 584 121 HOH HOH . 
F 5 HOH A 185 585 111 HOH HOH . 
F 5 HOH A 186 586 98 HOH HOH . 
F 5 HOH A 187 587 166 HOH HOH . 
F 5 HOH A 188 588 199 HOH HOH . 
F 5 HOH A 189 589 182 HOH HOH . 
F 5 HOH A 190 590 196 HOH HOH . 
F 5 HOH A 191 591 84 HOH HOH . 
F 5 HOH A 192 592 132 HOH HOH . 
F 5 HOH A 193 593 179 HOH HOH . 
F 5 HOH A 194 594 58 HOH HOH . 
F 5 HOH A 195 595 190 HOH HOH . 
F 5 HOH A 196 596 180 HOH HOH . 
F 5 HOH A 197 597 191 HOH HOH . 
F 5 HOH A 198 598 175 HOH HOH . 
F 5 HOH A 199 599 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 D1D . . . E 4 0.871 22.647 -20.956 1 29.04 ? S1 D1D 304 A 1 
HETATM 2 C C1 D1D . . . E 4 2.174 23.595 -21.687 1 29.1 ? C1 D1D 304 A 1 
HETATM 3 C C2 D1D . . . E 4 1.846 25.057 -21.731 1 30.13 ? C2 D1D 304 A 1 
HETATM 4 O O2 D1D . . . E 4 2.943 25.743 -22.2 1 30.63 ? O2 D1D 304 A 1 
HETATM 5 C C3 D1D . . . E 4 0.715 25.349 -22.664 1 30.5 ? C3 D1D 304 A 1 
HETATM 6 O O3 D1D . . . E 4 0.528 26.717 -22.742 1 30.22 ? O3 D1D 304 A 1 
HETATM 7 C C4 D1D . . . E 4 -0.561 24.724 -22.203 1 30.59 ? C4 D1D 304 A 1 
HETATM 8 S S4 D1D . . . E 4 -0.513 22.965 -22.37 1 30.6 ? S4 D1D 304 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#