data_5GIB
#
_model_server_result.job_id            ls_16q2pLP0oeKKXN62tZw 
_model_server_result.datetime_utc      '2024-11-08 06:06:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5GIB 
#
_exptl.entry_id    5GIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5GIB 
_cell.length_a            53.29 
_cell.length_b            58.26 
_cell.length_c            136.47 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 7 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 25 A CYS 25 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 109 A CYS 109 1_555 A SG CYS 210 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 116 A CYS 116 1_555 A SG CYS 183 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 148 A CYS 148 1_555 A SG CYS 162 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 A SG CYS 173 A CYS 173 1_555 A SG CYS 197 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 7 B CYS 7 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 B SG CYS 25 B CYS 25 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 B SG CYS 109 B CYS 109 1_555 B SG CYS 210 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 116 B CYS 116 1_555 B SG CYS 183 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 B SG CYS 148 B CYS 148 1_555 B SG CYS 162 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 B SG CYS 173 B CYS 173 1_555 B SG CYS 197 B CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A OE2 GLU 52 A GLU 52 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc2 A O ASN 54 A ASN 54 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc3 A O VAL 57 A VAL 57 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 62 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc5 B OE2 GLU 52 B GLU 52 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
metalc ? metalc6 B O ASN 54 B ASN 54 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc7 B O VAL 57 B VAL 57 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc8 B OE2 GLU 59 B GLU 59 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc9 B OE2 GLU 62 B GLU 62 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5GIB 
_atom_sites.fract_transf_matrix[1][1]    0.018765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SIN A 1 301 1 SIN SIN . 
D 3 CA A 1 302 1 CA CA . 
E 3 CA B 1 301 1 CA CA . 
F 4 HOH A 1 401 38 HOH HOH . 
F 4 HOH A 2 402 54 HOH HOH . 
F 4 HOH A 3 403 46 HOH HOH . 
F 4 HOH A 4 404 12 HOH HOH . 
F 4 HOH A 5 405 36 HOH HOH . 
F 4 HOH A 6 406 3 HOH HOH . 
F 4 HOH A 7 407 37 HOH HOH . 
F 4 HOH A 8 408 23 HOH HOH . 
F 4 HOH A 9 409 51 HOH HOH . 
F 4 HOH A 10 410 32 HOH HOH . 
F 4 HOH A 11 411 48 HOH HOH . 
F 4 HOH A 12 412 17 HOH HOH . 
F 4 HOH A 13 413 42 HOH HOH . 
F 4 HOH A 14 414 19 HOH HOH . 
F 4 HOH A 15 415 15 HOH HOH . 
F 4 HOH A 16 416 57 HOH HOH . 
F 4 HOH A 17 417 26 HOH HOH . 
F 4 HOH A 18 418 25 HOH HOH . 
F 4 HOH A 19 419 5 HOH HOH . 
F 4 HOH A 20 420 10 HOH HOH . 
F 4 HOH A 21 421 9 HOH HOH . 
F 4 HOH A 22 422 39 HOH HOH . 
F 4 HOH A 23 423 29 HOH HOH . 
F 4 HOH A 24 424 24 HOH HOH . 
F 4 HOH A 25 425 21 HOH HOH . 
F 4 HOH A 26 426 11 HOH HOH . 
F 4 HOH A 27 427 40 HOH HOH . 
F 4 HOH A 28 428 16 HOH HOH . 
F 4 HOH A 29 429 28 HOH HOH . 
G 4 HOH B 1 401 34 HOH HOH . 
G 4 HOH B 2 402 45 HOH HOH . 
G 4 HOH B 3 403 18 HOH HOH . 
G 4 HOH B 4 404 44 HOH HOH . 
G 4 HOH B 5 405 2 HOH HOH . 
G 4 HOH B 6 406 8 HOH HOH . 
G 4 HOH B 7 407 55 HOH HOH . 
G 4 HOH B 8 408 1 HOH HOH . 
G 4 HOH B 9 409 35 HOH HOH . 
G 4 HOH B 10 410 20 HOH HOH . 
G 4 HOH B 11 411 49 HOH HOH . 
G 4 HOH B 12 412 60 HOH HOH . 
G 4 HOH B 13 413 4 HOH HOH . 
G 4 HOH B 14 414 22 HOH HOH . 
G 4 HOH B 15 415 59 HOH HOH . 
G 4 HOH B 16 416 56 HOH HOH . 
G 4 HOH B 17 417 6 HOH HOH . 
G 4 HOH B 18 418 13 HOH HOH . 
G 4 HOH B 19 419 30 HOH HOH . 
G 4 HOH B 20 420 41 HOH HOH . 
G 4 HOH B 21 421 53 HOH HOH . 
G 4 HOH B 22 422 43 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               7.396 
_atom_site.Cartn_y               -25.912 
_atom_site.Cartn_z               22.527 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.82 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#