data_5GIC
#
_model_server_result.job_id            RAE2TH5dxZeQ2cTpLBjPMw 
_model_server_result.datetime_utc      '2025-07-31 00:57:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5gic 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5GIC 
#
_exptl.entry_id    5GIC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              547.768 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            (3~{R},5~{S})-5-[(2~{R})-2-[(1~{R},3~{a}~{S},4~{Z},7~{a}~{R})-7~{a}-methyl-4-[(2~{E})-2-[(3~{S},5~{R})-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(2-phenylethyl)pyrrolidin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.53 
_cell.angle_gamma         90 
_cell.entry_id            5GIC 
_cell.length_a            154.315 
_cell.length_b            42.444 
_cell.length_c            42.106 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5GIC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C35 H49 N O4' 
_chem_comp.formula_weight    547.768 
_chem_comp.id                DLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3~{R},5~{S})-5-[(2~{R})-2-[(1~{R},3~{a}~{S},4~{Z},7~{a}~{R})-7~{a}-methyl-4-[(2~{E})-2-[(3~{S},5~{R})-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(2-phenylethyl)pyrrolidin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C32 C33 DLC doub 83 n y 
C32 C31 DLC sing 84 n y 
C33 C34 DLC sing 85 n y 
C31 C30 DLC doub 86 n y 
C34 C29 DLC doub 87 n y 
C30 C29 DLC sing 88 n y 
C29 C26 DLC sing 89 n n 
C26 C25 DLC sing 90 n n 
C25 N DLC sing 91 n n 
O3 C24 DLC doub 92 n n 
N C24 DLC sing 93 n n 
N C21 DLC sing 94 n n 
C24 C23 DLC sing 95 n n 
C36 C19 DLC sing 96 n n 
C21 C20 DLC sing 97 n n 
C21 C22 DLC sing 98 n n 
C4 C5 DLC sing 99 n n 
C4 C3 DLC sing 100 n n 
C20 C19 DLC sing 101 n n 
C19 C9 DLC sing 102 n n 
C5 C6 DLC sing 103 n n 
C23 C22 DLC sing 104 n n 
C23 C37 DLC sing 105 n n 
C23 O4 DLC sing 106 n n 
C9 C3 DLC sing 107 n n 
C9 C8 DLC sing 108 n n 
C3 C2 DLC sing 109 n n 
C3 C35 DLC sing 110 n n 
C6 C1 DLC sing 111 n n 
C8 C7 DLC sing 112 n n 
C2 C1 DLC sing 113 n n 
C2 C7 DLC sing 114 n n 
C1 C10 DLC doub 115 z n 
C10 C11 DLC sing 116 n n 
C11 C12 DLC doub 117 e n 
C12 C13 DLC sing 118 n n 
C12 C17 DLC sing 119 n n 
C13 C14 DLC sing 120 n n 
C18 C17 DLC doub 121 n n 
C17 C16 DLC sing 122 n n 
C14 O2 DLC sing 123 n n 
C14 C15 DLC sing 124 n n 
C16 C15 DLC sing 125 n n 
C16 O1 DLC sing 126 n n 
O4 H1 DLC sing 127 n n 
C37 H2 DLC sing 128 n n 
C37 H3 DLC sing 129 n n 
C37 H4 DLC sing 130 n n 
C22 H5 DLC sing 131 n n 
C22 H6 DLC sing 132 n n 
C21 H7 DLC sing 133 n n 
C25 H8 DLC sing 134 n n 
C25 H9 DLC sing 135 n n 
C26 H10 DLC sing 136 n n 
C26 H11 DLC sing 137 n n 
C34 H12 DLC sing 138 n n 
C33 H13 DLC sing 139 n n 
C32 H14 DLC sing 140 n n 
C31 H15 DLC sing 141 n n 
C30 H16 DLC sing 142 n n 
C20 H17 DLC sing 143 n n 
C20 H18 DLC sing 144 n n 
C19 H19 DLC sing 145 n n 
C36 H20 DLC sing 146 n n 
C36 H21 DLC sing 147 n n 
C36 H22 DLC sing 148 n n 
C9 H23 DLC sing 149 n n 
C35 H24 DLC sing 150 n n 
C35 H25 DLC sing 151 n n 
C35 H26 DLC sing 152 n n 
C2 H27 DLC sing 153 n n 
C7 H28 DLC sing 154 n n 
C7 H29 DLC sing 155 n n 
C8 H30 DLC sing 156 n n 
C8 H31 DLC sing 157 n n 
C4 H32 DLC sing 158 n n 
C4 H33 DLC sing 159 n n 
C5 H34 DLC sing 160 n n 
C5 H35 DLC sing 161 n n 
C6 H36 DLC sing 162 n n 
C6 H37 DLC sing 163 n n 
C10 H38 DLC sing 164 n n 
C11 H39 DLC sing 165 n n 
C18 H40 DLC sing 166 n n 
C18 H41 DLC sing 167 n n 
C16 H42 DLC sing 168 n n 
O1 H43 DLC sing 169 n n 
C15 H44 DLC sing 170 n n 
C15 H45 DLC sing 171 n n 
C14 H46 DLC sing 172 n n 
O2 H47 DLC sing 173 n n 
C13 H48 DLC sing 174 n n 
C13 H49 DLC sing 175 n n 
#
_atom_sites.entry_id                     5GIC 
_atom_sites.fract_transf_matrix[1][1]    0.00648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000741 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02356 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023904 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DLC A 1 501 501 DLC DLC . 
D 4 HOH A 1 601 27 HOH HOH . 
D 4 HOH A 2 602 32 HOH HOH . 
D 4 HOH A 3 603 13 HOH HOH . 
D 4 HOH A 4 604 14 HOH HOH . 
D 4 HOH A 5 605 2 HOH HOH . 
D 4 HOH A 6 606 1 HOH HOH . 
D 4 HOH A 7 607 26 HOH HOH . 
D 4 HOH A 8 608 3 HOH HOH . 
D 4 HOH A 9 609 18 HOH HOH . 
D 4 HOH A 10 610 4 HOH HOH . 
D 4 HOH A 11 611 5 HOH HOH . 
D 4 HOH A 12 612 25 HOH HOH . 
D 4 HOH A 13 613 9 HOH HOH . 
D 4 HOH A 14 614 12 HOH HOH . 
D 4 HOH A 15 615 24 HOH HOH . 
D 4 HOH A 16 616 6 HOH HOH . 
D 4 HOH A 17 617 8 HOH HOH . 
D 4 HOH A 18 618 33 HOH HOH . 
D 4 HOH A 19 619 30 HOH HOH . 
D 4 HOH A 20 620 7 HOH HOH . 
D 4 HOH A 21 621 35 HOH HOH . 
D 4 HOH A 22 622 29 HOH HOH . 
D 4 HOH A 23 623 36 HOH HOH . 
D 4 HOH A 24 624 16 HOH HOH . 
D 4 HOH A 25 625 10 HOH HOH . 
D 4 HOH A 26 626 19 HOH HOH . 
E 4 HOH C 1 701 23 HOH HOH . 
E 4 HOH C 2 702 34 HOH HOH . 
E 4 HOH C 3 703 15 HOH HOH . 
E 4 HOH C 4 704 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 DLC . . . C 3 -11.937 -2.941 -8.297 1 72.58 ? O3 DLC 501 A 1 
HETATM 2 C C24 DLC . . . C 3 -12.258 -1.964 -7.635 1 72.71 ? C24 DLC 501 A 1 
HETATM 3 C C23 DLC . . . C 3 -11.936 -1.809 -6.179 1 72.89 ? C23 DLC 501 A 1 
HETATM 4 O O4 DLC . . . C 3 -12.897 -2.497 -5.379 1 74.66 ? O4 DLC 501 A 1 
HETATM 5 C C37 DLC . . . C 3 -10.541 -2.326 -5.86 1 72.7 ? C37 DLC 501 A 1 
HETATM 6 C C22 DLC . . . C 3 -12.088 -0.312 -5.946 1 71.05 ? C22 DLC 501 A 1 
HETATM 7 C C21 DLC . . . C 3 -12.829 0.263 -7.157 1 69.11 ? C21 DLC 501 A 1 
HETATM 8 N N DLC . . . C 3 -12.926 -0.892 -8.048 1 71.9 ? N DLC 501 A 1 
HETATM 9 C C25 DLC . . . C 3 -13.76 -0.692 -9.229 1 72.94 ? C25 DLC 501 A 1 
HETATM 10 C C26 DLC . . . C 3 -12.855 -0.897 -10.44 1 73.54 ? C26 DLC 501 A 1 
HETATM 11 C C29 DLC . . . C 3 -12.004 0.34 -10.617 1 74.85 ? C29 DLC 501 A 1 
HETATM 12 C C34 DLC . . . C 3 -10.62 0.233 -10.713 1 75.34 ? C34 DLC 501 A 1 
HETATM 13 C C33 DLC . . . C 3 -9.838 1.373 -10.873 1 75.6 ? C33 DLC 501 A 1 
HETATM 14 C C32 DLC . . . C 3 -10.444 2.622 -10.941 1 75.98 ? C32 DLC 501 A 1 
HETATM 15 C C31 DLC . . . C 3 -11.829 2.728 -10.846 1 75.69 ? C31 DLC 501 A 1 
HETATM 16 C C30 DLC . . . C 3 -12.611 1.589 -10.687 1 75.18 ? C30 DLC 501 A 1 
HETATM 17 C C20 DLC . . . C 3 -14.23 0.723 -6.74 1 64.09 ? C20 DLC 501 A 1 
HETATM 18 C C19 DLC . . . C 3 -14.142 2.203 -6.355 1 59.58 ? C19 DLC 501 A 1 
HETATM 19 C C36 DLC . . . C 3 -13.307 2.886 -7.443 1 58.97 ? C36 DLC 501 A 1 
HETATM 20 C C9 DLC . . . C 3 -15.507 2.869 -6.077 1 56.03 ? C9 DLC 501 A 1 
HETATM 21 C C3 DLC . . . C 3 -15.469 4.34 -5.653 1 53.99 ? C3 DLC 501 A 1 
HETATM 22 C C35 DLC . . . C 3 -14.331 4.579 -4.662 1 55.28 ? C35 DLC 501 A 1 
HETATM 23 C C2 DLC . . . C 3 -16.775 4.529 -4.898 1 53.99 ? C2 DLC 501 A 1 
HETATM 24 C C7 DLC . . . C 3 -16.914 3.263 -4.062 1 53.94 ? C7 DLC 501 A 1 
HETATM 25 C C8 DLC . . . C 3 -16.29 2.177 -4.953 1 54.42 ? C8 DLC 501 A 1 
HETATM 26 C C4 DLC . . . C 3 -15.438 5.361 -6.786 1 53.87 ? C4 DLC 501 A 1 
HETATM 27 C C5 DLC . . . C 3 -15.566 6.791 -6.266 1 54.51 ? C5 DLC 501 A 1 
HETATM 28 C C6 DLC . . . C 3 -16.796 6.992 -5.385 1 54.87 ? C6 DLC 501 A 1 
HETATM 29 C C1 DLC . . . C 3 -16.793 5.931 -4.318 1 53.67 ? C1 DLC 501 A 1 
HETATM 30 C C10 DLC . . . C 3 -16.799 6.395 -3.048 1 52.86 ? C10 DLC 501 A 1 
HETATM 31 C C11 DLC . . . C 3 -16.765 5.67 -1.784 1 52.06 ? C11 DLC 501 A 1 
HETATM 32 C C12 DLC . . . C 3 -16.635 6.356 -0.629 1 50.72 ? C12 DLC 501 A 1 
HETATM 33 C C17 DLC . . . C 3 -16.583 5.672 0.505 1 50.28 ? C17 DLC 501 A 1 
HETATM 34 C C18 DLC . . . C 3 -16.067 4.465 0.494 1 50.91 ? C18 DLC 501 A 1 
HETATM 35 C C16 DLC . . . C 3 -17.09 6.244 1.788 1 50.34 ? C16 DLC 501 A 1 
HETATM 36 O O1 DLC . . . C 3 -16.629 5.431 2.872 1 50.2 ? O1 DLC 501 A 1 
HETATM 37 C C15 DLC . . . C 3 -16.51 7.641 1.909 1 50.31 ? C15 DLC 501 A 1 
HETATM 38 C C14 DLC . . . C 3 -16.992 8.475 0.73 1 50.43 ? C14 DLC 501 A 1 
HETATM 39 O O2 DLC . . . C 3 -18.42 8.538 0.806 1 50.82 ? O2 DLC 501 A 1 
HETATM 40 C C13 DLC . . . C 3 -16.556 7.871 -0.612 1 49.66 ? C13 DLC 501 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           40 
#