data_5GIF # _model_server_result.job_id L8n4aoY0lRQN7QMPPVwp0w _model_server_result.datetime_utc '2024-11-02 00:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5GIF # _exptl.entry_id 5GIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,5S)-1,2-DITHIANE-4,5-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5GIF _cell.length_a 44.138 _cell.length_b 56.58 _cell.length_c 84.203 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C4 H8 O2 S2' _chem_comp.formula_weight 152.235 _chem_comp.id D1D _chem_comp.mon_nstd_flag . _chem_comp.name (4S,5S)-1,2-DITHIANE-4,5-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 D1D sing 174 n n S1 S4 D1D sing 175 n n C1 C2 D1D sing 176 n n C1 H1C1 D1D sing 177 n n C1 H1C2 D1D sing 178 n n C2 O2 D1D sing 179 n n C2 C3 D1D sing 180 n n C2 H2 D1D sing 181 n n O2 HA D1D sing 182 n n C3 O3 D1D sing 183 n n C3 C4 D1D sing 184 n n C3 H3 D1D sing 185 n n O3 HB D1D sing 186 n n C4 S4 D1D sing 187 n n C4 H4C1 D1D sing 188 n n C4 H4C2 D1D sing 189 n n # _atom_sites.entry_id 5GIF _atom_sites.fract_transf_matrix[1][1] 0.022656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D1D A 1 301 201 D1D D1D . C 2 D1D A 1 302 202 D1D D1D . D 3 ACO A 1 303 231 ACO ACO . E 4 HOH A 1 401 77 HOH HOH . E 4 HOH A 2 402 108 HOH HOH . E 4 HOH A 3 403 149 HOH HOH . E 4 HOH A 4 404 164 HOH HOH . E 4 HOH A 5 405 167 HOH HOH . E 4 HOH A 6 406 168 HOH HOH . E 4 HOH A 7 407 122 HOH HOH . E 4 HOH A 8 408 233 HOH HOH . E 4 HOH A 9 409 69 HOH HOH . E 4 HOH A 10 410 98 HOH HOH . E 4 HOH A 11 411 115 HOH HOH . E 4 HOH A 12 412 82 HOH HOH . E 4 HOH A 13 413 259 HOH HOH . E 4 HOH A 14 414 104 HOH HOH . E 4 HOH A 15 415 93 HOH HOH . E 4 HOH A 16 416 110 HOH HOH . E 4 HOH A 17 417 227 HOH HOH . E 4 HOH A 18 418 155 HOH HOH . E 4 HOH A 19 419 118 HOH HOH . E 4 HOH A 20 420 106 HOH HOH . E 4 HOH A 21 421 254 HOH HOH . E 4 HOH A 22 422 20 HOH HOH . E 4 HOH A 23 423 119 HOH HOH . E 4 HOH A 24 424 54 HOH HOH . E 4 HOH A 25 425 152 HOH HOH . E 4 HOH A 26 426 253 HOH HOH . E 4 HOH A 27 427 46 HOH HOH . E 4 HOH A 28 428 40 HOH HOH . E 4 HOH A 29 429 81 HOH HOH . E 4 HOH A 30 430 1 HOH HOH . E 4 HOH A 31 431 49 HOH HOH . E 4 HOH A 32 432 209 HOH HOH . E 4 HOH A 33 433 3 HOH HOH . E 4 HOH A 34 434 57 HOH HOH . E 4 HOH A 35 435 92 HOH HOH . E 4 HOH A 36 436 185 HOH HOH . E 4 HOH A 37 437 44 HOH HOH . E 4 HOH A 38 438 114 HOH HOH . E 4 HOH A 39 439 229 HOH HOH . E 4 HOH A 40 440 217 HOH HOH . E 4 HOH A 41 441 9 HOH HOH . E 4 HOH A 42 442 242 HOH HOH . E 4 HOH A 43 443 68 HOH HOH . E 4 HOH A 44 444 111 HOH HOH . E 4 HOH A 45 445 201 HOH HOH . E 4 HOH A 46 446 35 HOH HOH . E 4 HOH A 47 447 5 HOH HOH . E 4 HOH A 48 448 47 HOH HOH . E 4 HOH A 49 449 17 HOH HOH . E 4 HOH A 50 450 12 HOH HOH . E 4 HOH A 51 451 198 HOH HOH . E 4 HOH A 52 452 188 HOH HOH . E 4 HOH A 53 453 116 HOH HOH . E 4 HOH A 54 454 205 HOH HOH . E 4 HOH A 55 455 131 HOH HOH . E 4 HOH A 56 456 27 HOH HOH . E 4 HOH A 57 457 25 HOH HOH . E 4 HOH A 58 458 26 HOH HOH . E 4 HOH A 59 459 181 HOH HOH . E 4 HOH A 60 460 281 HOH HOH . E 4 HOH A 61 461 263 HOH HOH . E 4 HOH A 62 462 141 HOH HOH . E 4 HOH A 63 463 239 HOH HOH . E 4 HOH A 64 464 221 HOH HOH . E 4 HOH A 65 465 23 HOH HOH . E 4 HOH A 66 466 124 HOH HOH . E 4 HOH A 67 467 7 HOH HOH . E 4 HOH A 68 468 142 HOH HOH . E 4 HOH A 69 469 102 HOH HOH . E 4 HOH A 70 470 53 HOH HOH . E 4 HOH A 71 471 147 HOH HOH . E 4 HOH A 72 472 38 HOH HOH . E 4 HOH A 73 473 16 HOH HOH . E 4 HOH A 74 474 8 HOH HOH . E 4 HOH A 75 475 211 HOH HOH . E 4 HOH A 76 476 175 HOH HOH . E 4 HOH A 77 477 24 HOH HOH . E 4 HOH A 78 478 28 HOH HOH . E 4 HOH A 79 479 60 HOH HOH . E 4 HOH A 80 480 19 HOH HOH . E 4 HOH A 81 481 11 HOH HOH . E 4 HOH A 82 482 255 HOH HOH . E 4 HOH A 83 483 206 HOH HOH . E 4 HOH A 84 484 43 HOH HOH . E 4 HOH A 85 485 36 HOH HOH . E 4 HOH A 86 486 163 HOH HOH . E 4 HOH A 87 487 95 HOH HOH . E 4 HOH A 88 488 86 HOH HOH . E 4 HOH A 89 489 130 HOH HOH . E 4 HOH A 90 490 178 HOH HOH . E 4 HOH A 91 491 275 HOH HOH . E 4 HOH A 92 492 216 HOH HOH . E 4 HOH A 93 493 76 HOH HOH . E 4 HOH A 94 494 172 HOH HOH . E 4 HOH A 95 495 103 HOH HOH . E 4 HOH A 96 496 41 HOH HOH . E 4 HOH A 97 497 33 HOH HOH . E 4 HOH A 98 498 14 HOH HOH . E 4 HOH A 99 499 74 HOH HOH . E 4 HOH A 100 500 6 HOH HOH . E 4 HOH A 101 501 173 HOH HOH . E 4 HOH A 102 502 45 HOH HOH . E 4 HOH A 103 503 39 HOH HOH . E 4 HOH A 104 504 138 HOH HOH . E 4 HOH A 105 505 63 HOH HOH . E 4 HOH A 106 506 120 HOH HOH . E 4 HOH A 107 507 75 HOH HOH . E 4 HOH A 108 508 18 HOH HOH . E 4 HOH A 109 509 228 HOH HOH . E 4 HOH A 110 510 21 HOH HOH . E 4 HOH A 111 511 31 HOH HOH . E 4 HOH A 112 512 150 HOH HOH . E 4 HOH A 113 513 101 HOH HOH . E 4 HOH A 114 514 193 HOH HOH . E 4 HOH A 115 515 207 HOH HOH . E 4 HOH A 116 516 71 HOH HOH . E 4 HOH A 117 517 52 HOH HOH . E 4 HOH A 118 518 56 HOH HOH . E 4 HOH A 119 519 32 HOH HOH . E 4 HOH A 120 520 232 HOH HOH . E 4 HOH A 121 521 151 HOH HOH . E 4 HOH A 122 522 143 HOH HOH . E 4 HOH A 123 523 139 HOH HOH . E 4 HOH A 124 524 213 HOH HOH . E 4 HOH A 125 525 65 HOH HOH . E 4 HOH A 126 526 87 HOH HOH . E 4 HOH A 127 527 194 HOH HOH . E 4 HOH A 128 528 154 HOH HOH . E 4 HOH A 129 529 59 HOH HOH . E 4 HOH A 130 530 80 HOH HOH . E 4 HOH A 131 531 62 HOH HOH . E 4 HOH A 132 532 169 HOH HOH . E 4 HOH A 133 533 4 HOH HOH . E 4 HOH A 134 534 88 HOH HOH . E 4 HOH A 135 535 125 HOH HOH . E 4 HOH A 136 536 133 HOH HOH . E 4 HOH A 137 537 83 HOH HOH . E 4 HOH A 138 538 10 HOH HOH . E 4 HOH A 139 539 2 HOH HOH . E 4 HOH A 140 540 67 HOH HOH . E 4 HOH A 141 541 140 HOH HOH . E 4 HOH A 142 542 145 HOH HOH . E 4 HOH A 143 543 79 HOH HOH . E 4 HOH A 144 544 132 HOH HOH . E 4 HOH A 145 545 231 HOH HOH . E 4 HOH A 146 546 121 HOH HOH . E 4 HOH A 147 547 34 HOH HOH . E 4 HOH A 148 548 159 HOH HOH . E 4 HOH A 149 549 30 HOH HOH . E 4 HOH A 150 550 117 HOH HOH . E 4 HOH A 151 551 203 HOH HOH . E 4 HOH A 152 552 129 HOH HOH . E 4 HOH A 153 553 222 HOH HOH . E 4 HOH A 154 554 51 HOH HOH . E 4 HOH A 155 555 243 HOH HOH . E 4 HOH A 156 556 270 HOH HOH . E 4 HOH A 157 557 235 HOH HOH . E 4 HOH A 158 558 219 HOH HOH . E 4 HOH A 159 559 50 HOH HOH . E 4 HOH A 160 560 225 HOH HOH . E 4 HOH A 161 561 224 HOH HOH . E 4 HOH A 162 562 37 HOH HOH . E 4 HOH A 163 563 214 HOH HOH . E 4 HOH A 164 564 276 HOH HOH . E 4 HOH A 165 565 64 HOH HOH . E 4 HOH A 166 566 202 HOH HOH . E 4 HOH A 167 567 13 HOH HOH . E 4 HOH A 168 568 161 HOH HOH . E 4 HOH A 169 569 153 HOH HOH . E 4 HOH A 170 570 22 HOH HOH . E 4 HOH A 171 571 266 HOH HOH . E 4 HOH A 172 572 251 HOH HOH . E 4 HOH A 173 573 42 HOH HOH . E 4 HOH A 174 574 15 HOH HOH . E 4 HOH A 175 575 157 HOH HOH . E 4 HOH A 176 576 55 HOH HOH . E 4 HOH A 177 577 189 HOH HOH . E 4 HOH A 178 578 90 HOH HOH . E 4 HOH A 179 579 109 HOH HOH . E 4 HOH A 180 580 29 HOH HOH . E 4 HOH A 181 581 191 HOH HOH . E 4 HOH A 182 582 184 HOH HOH . E 4 HOH A 183 583 257 HOH HOH . E 4 HOH A 184 584 162 HOH HOH . E 4 HOH A 185 585 247 HOH HOH . E 4 HOH A 186 586 134 HOH HOH . E 4 HOH A 187 587 160 HOH HOH . E 4 HOH A 188 588 72 HOH HOH . E 4 HOH A 189 589 190 HOH HOH . E 4 HOH A 190 590 105 HOH HOH . E 4 HOH A 191 591 262 HOH HOH . E 4 HOH A 192 592 99 HOH HOH . E 4 HOH A 193 593 271 HOH HOH . E 4 HOH A 194 594 97 HOH HOH . E 4 HOH A 195 595 244 HOH HOH . E 4 HOH A 196 596 89 HOH HOH . E 4 HOH A 197 597 100 HOH HOH . E 4 HOH A 198 598 148 HOH HOH . E 4 HOH A 199 599 220 HOH HOH . E 4 HOH A 200 600 183 HOH HOH . E 4 HOH A 201 601 156 HOH HOH . E 4 HOH A 202 602 61 HOH HOH . E 4 HOH A 203 603 186 HOH HOH . E 4 HOH A 204 604 208 HOH HOH . E 4 HOH A 205 605 91 HOH HOH . E 4 HOH A 206 606 260 HOH HOH . E 4 HOH A 207 607 165 HOH HOH . E 4 HOH A 208 608 195 HOH HOH . E 4 HOH A 209 609 187 HOH HOH . E 4 HOH A 210 610 241 HOH HOH . E 4 HOH A 211 611 192 HOH HOH . E 4 HOH A 212 612 196 HOH HOH . E 4 HOH A 213 613 267 HOH HOH . E 4 HOH A 214 614 279 HOH HOH . E 4 HOH A 215 615 226 HOH HOH . E 4 HOH A 216 616 58 HOH HOH . E 4 HOH A 217 617 240 HOH HOH . E 4 HOH A 218 618 171 HOH HOH . E 4 HOH A 219 619 170 HOH HOH . E 4 HOH A 220 620 176 HOH HOH . E 4 HOH A 221 621 274 HOH HOH . E 4 HOH A 222 622 107 HOH HOH . E 4 HOH A 223 623 215 HOH HOH . E 4 HOH A 224 624 48 HOH HOH . E 4 HOH A 225 625 269 HOH HOH . E 4 HOH A 226 626 223 HOH HOH . E 4 HOH A 227 627 78 HOH HOH . E 4 HOH A 228 628 277 HOH HOH . E 4 HOH A 229 629 146 HOH HOH . E 4 HOH A 230 630 252 HOH HOH . E 4 HOH A 231 631 136 HOH HOH . E 4 HOH A 232 632 261 HOH HOH . E 4 HOH A 233 633 113 HOH HOH . E 4 HOH A 234 634 210 HOH HOH . E 4 HOH A 235 635 197 HOH HOH . E 4 HOH A 236 636 245 HOH HOH . E 4 HOH A 237 637 212 HOH HOH . E 4 HOH A 238 638 127 HOH HOH . E 4 HOH A 239 639 96 HOH HOH . E 4 HOH A 240 640 137 HOH HOH . E 4 HOH A 241 641 123 HOH HOH . E 4 HOH A 242 642 112 HOH HOH . E 4 HOH A 243 643 273 HOH HOH . E 4 HOH A 244 644 84 HOH HOH . E 4 HOH A 245 645 199 HOH HOH . E 4 HOH A 246 646 236 HOH HOH . E 4 HOH A 247 647 256 HOH HOH . E 4 HOH A 248 648 278 HOH HOH . E 4 HOH A 249 649 85 HOH HOH . E 4 HOH A 250 650 248 HOH HOH . E 4 HOH A 251 651 280 HOH HOH . E 4 HOH A 252 652 237 HOH HOH . E 4 HOH A 253 653 234 HOH HOH . E 4 HOH A 254 654 94 HOH HOH . E 4 HOH A 255 655 179 HOH HOH . E 4 HOH A 256 656 144 HOH HOH . E 4 HOH A 257 657 264 HOH HOH . E 4 HOH A 258 658 174 HOH HOH . E 4 HOH A 259 659 200 HOH HOH . E 4 HOH A 260 660 128 HOH HOH . E 4 HOH A 261 661 268 HOH HOH . E 4 HOH A 262 662 177 HOH HOH . E 4 HOH A 263 663 218 HOH HOH . E 4 HOH A 264 664 73 HOH HOH . E 4 HOH A 265 665 238 HOH HOH . E 4 HOH A 266 666 166 HOH HOH . E 4 HOH A 267 667 135 HOH HOH . E 4 HOH A 268 668 66 HOH HOH . E 4 HOH A 269 669 246 HOH HOH . E 4 HOH A 270 670 249 HOH HOH . E 4 HOH A 271 671 180 HOH HOH . E 4 HOH A 272 672 204 HOH HOH . E 4 HOH A 273 673 158 HOH HOH . E 4 HOH A 274 674 182 HOH HOH . E 4 HOH A 275 675 265 HOH HOH . E 4 HOH A 276 676 272 HOH HOH . E 4 HOH A 277 677 250 HOH HOH . E 4 HOH A 278 678 230 HOH HOH . E 4 HOH A 279 679 126 HOH HOH . E 4 HOH A 280 680 258 HOH HOH . E 4 HOH A 281 681 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 D1D . . . C 2 88.865 79.76 22.159 1 26.61 ? S1 D1D 302 A 1 HETATM 2 C C1 D1D . . . C 2 88.917 81.526 22.112 1 26.36 ? C1 D1D 302 A 1 HETATM 3 C C2 D1D . . . C 2 87.653 82.094 22.657 1 26.76 ? C2 D1D 302 A 1 HETATM 4 O O2 D1D . . . C 2 87.842 83.446 22.873 1 27.04 ? O2 D1D 302 A 1 HETATM 5 C C3 D1D . . . C 2 86.517 81.883 21.711 1 26.09 ? C3 D1D 302 A 1 HETATM 6 O O3 D1D . . . C 2 85.415 82.525 22.235 1 25.07 ? O3 D1D 302 A 1 HETATM 7 C C4 D1D . . . C 2 86.176 80.434 21.54 1 25.95 ? C4 D1D 302 A 1 HETATM 8 S S4 D1D . . . C 2 87.464 79.513 20.747 1 25.69 ? S4 D1D 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #