data_5GIT # _model_server_result.job_id eDN8pcLb_TNSHAyKXL5izg _model_server_result.datetime_utc '2024-11-05 12:33:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5git # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5GIT # _exptl.entry_id 5GIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.406 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3aS,5R,5aS,6S,8S,8aS,9S,9aR)-9-acetyloxy-8-hydroxy-5,8a-dimethyl-1-methylidene-2-oxo-4,5,5a,6,7,8,9,9a-octahydro-3aH-azuleno[6,5-b]furan-6-yl] acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5GIT _cell.length_a 42.45 _cell.length_b 42.45 _cell.length_c 265.15 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 151 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id XXT _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XXT _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.846 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H26 O7' _chem_comp.formula_weight 366.406 _chem_comp.id XXT _chem_comp.mon_nstd_flag . _chem_comp.name '[(3aS,5R,5aS,6S,8S,8aS,9S,9aR)-9-acetyloxy-8-hydroxy-5,8a-dimethyl-1-methylidene-2-oxo-4,5,5a,6,7,8,9,9a-octahydro-3aH-azuleno[6,5-b]furan-6-yl] acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Britannin # _atom_sites.entry_id 5GIT _atom_sites.fract_transf_matrix[1][1] 0.023557 _atom_sites.fract_transf_matrix[1][2] 0.013601 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XXT A 1 201 1 XXT XX3 . C 3 HOH A 1 301 11 HOH HOH . C 3 HOH A 2 302 24 HOH HOH . C 3 HOH A 3 303 34 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 1 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 2 HOH HOH . C 3 HOH A 8 308 10 HOH HOH . C 3 HOH A 9 309 32 HOH HOH . C 3 HOH A 10 310 30 HOH HOH . C 3 HOH A 11 311 15 HOH HOH . C 3 HOH A 12 312 14 HOH HOH . C 3 HOH A 13 313 31 HOH HOH . C 3 HOH A 14 314 35 HOH HOH . C 3 HOH A 15 315 3 HOH HOH . C 3 HOH A 16 316 9 HOH HOH . C 3 HOH A 17 317 22 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 29 HOH HOH . C 3 HOH A 20 320 26 HOH HOH . C 3 HOH A 21 321 23 HOH HOH . C 3 HOH A 22 322 5 HOH HOH . C 3 HOH A 23 323 7 HOH HOH . C 3 HOH A 24 324 12 HOH HOH . C 3 HOH A 25 325 33 HOH HOH . C 3 HOH A 26 326 27 HOH HOH . C 3 HOH A 27 327 17 HOH HOH . C 3 HOH A 28 328 21 HOH HOH . C 3 HOH A 29 329 13 HOH HOH . C 3 HOH A 30 330 28 HOH HOH . C 3 HOH A 31 331 16 HOH HOH . C 3 HOH A 32 332 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 XXT . . . B 2 -3.417 -7.597 7.695 0.9 107.59 ? C2 XXT 201 A 1 HETATM 2 C C1 XXT . . . B 2 -2.926 -6.405 6.882 0.9 109.88 ? C1 XXT 201 A 1 HETATM 3 O O7 XXT . . . B 2 0.81 -7.489 7.82 0.9 112.17 ? O7 XXT 201 A 1 HETATM 4 C C6 XXT . . . B 2 -0.726 -6.203 10.062 0.9 103.34 ? C6 XXT 201 A 1 HETATM 5 C C5 XXT . . . B 2 -1.878 -5.673 7.738 0.9 105.05 ? C5 XXT 201 A 1 HETATM 6 C C3 XXT . . . B 2 -2.527 -7.654 8.926 0.9 109.26 ? C3 XXT 201 A 1 HETATM 7 C C4 XXT . . . B 2 -2.015 -6.219 9.18 0.9 106.77 ? C4 XXT 201 A 1 HETATM 8 C C18 XXT . . . B 2 0.912 -7.879 8.977 0.9 114.92 ? C18 XXT 201 A 1 HETATM 9 C C19 XXT . . . B 2 2.04 -8.786 9.365 0.9 110.4 ? C19 XXT 201 A 1 HETATM 10 O O6 XXT . . . B 2 -0.062 -7.498 10.023 0.9 115.99 ? O6 XXT 201 A 1 HETATM 11 C C15 XXT . . . B 2 -3.132 -5.481 9.934 0.9 100.44 ? C15 XXT 201 A 1 HETATM 12 O O2 XXT . . . B 2 -3.246 -8.241 10.018 0.9 110.62 ? O2 XXT 201 A 1 HETATM 13 C C7 XXT . . . B 2 0.315 -5.079 9.84 0.9 97.45 ? C7 XXT 201 A 1 HETATM 14 C C11 XXT . . . B 2 1.14 -4.745 11.095 0.9 95.64 ? C11 XXT 201 A 1 HETATM 15 C C14 XXT . . . B 2 2.256 -5.719 11.478 0.9 98.83 ? C14 XXT 201 A 1 HETATM 16 C C12 XXT . . . B 2 1.674 -3.396 10.701 0.9 89.97 ? C12 XXT 201 A 1 HETATM 17 O O3 XXT . . . B 2 2.709 -2.869 11.113 0.9 82.03 ? O3 XXT 201 A 1 HETATM 18 O O1 XXT . . . B 2 0.828 -2.759 9.711 0.9 82.46 ? O1 XXT 201 A 1 HETATM 19 C C8 XXT . . . B 2 -0.2 -3.703 9.387 0.9 94.49 ? C8 XXT 201 A 1 HETATM 20 C C9 XXT . . . B 2 -0.513 -3.589 7.897 0.9 94.05 ? C9 XXT 201 A 1 HETATM 21 C C10 XXT . . . B 2 -1.895 -4.143 7.563 0.9 93.66 ? C10 XXT 201 A 1 HETATM 22 C C13 XXT . . . B 2 -2.298 -3.677 6.163 0.9 88.07 ? C13 XXT 201 A 1 HETATM 23 O O4 XXT . . . B 2 -2.329 -6.819 5.644 0.9 112.25 ? O4 XXT 201 A 1 HETATM 24 C C16 XXT . . . B 2 -3.212 -7.429 4.644 0.9 115.41 ? C16 XXT 201 A 1 HETATM 25 O O5 XXT . . . B 2 -4.308 -6.935 4.432 0.9 120.52 ? O5 XXT 201 A 1 HETATM 26 C C17 XXT . . . B 2 -2.75 -8.644 3.888 0.9 108.2 ? C17 XXT 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #