data_5GIX # _model_server_result.job_id 6Nro96cEAyWrEXS8vjMFaA _model_server_result.datetime_utc '2024-11-27 06:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5gix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5GIX # _exptl.entry_id 5GIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.254 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 14-piperidin-1-yl-11-oxa-13$l^{3}-thia-15,16$l^{4}-diaza-12$l^{3}-ferratetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(10),2(7),3,5,8,13,16-heptaene _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.9 _cell.angle_beta 89.9 _cell.angle_gamma 100.86 _cell.entry_id 5GIX _cell.length_a 38.472 _cell.length_b 94.55 _cell.length_c 96.105 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5GIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,Q 1 1 B,J,K,L,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 B SG CYS 51 B CYS 53 1_555 B SG CYS 60 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 73 B CYS 75 1_555 B SG CYS 89 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf20 B SG CYS 88 B CYS 90 1_555 B SG CYS 99 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 B SG CYS 122 B CYS 124 1_555 B SG CYS 167 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf22 B SG CYS 166 B CYS 168 1_555 B SG CYS 175 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf23 B SG CYS 198 B CYS 200 1_555 B SG CYS 244 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 B SG CYS 243 B CYS 245 1_555 B SG CYS 251 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf25 B SG CYS 263 B CYS 265 1_555 B SG CYS 277 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf26 B SG CYS 276 B CYS 278 1_555 B SG CYS 287 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf27 B SG CYS 314 B CYS 316 1_555 B SG CYS 359 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf28 B SG CYS 358 B CYS 360 1_555 B SG CYS 367 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf29 B SG CYS 390 B CYS 392 1_555 B SG CYS 436 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf30 B SG CYS 435 B CYS 437 1_555 B SG CYS 446 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf31 B SG CYS 459 B CYS 461 1_555 B SG CYS 475 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf32 B SG CYS 474 B CYS 476 1_555 B SG CYS 485 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf33 B SG CYS 512 B CYS 514 1_555 B SG CYS 557 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf34 B SG CYS 556 B CYS 558 1_555 B SG CYS 565 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A NE ARG 115 A ARG 117 1_555 D O2 PLM . A PLM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale2 A NZ LYS 197 A LYS 199 1_555 C S09 6WF . A 6WF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 A CB CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 ? covale ? covale4 A SG CYS 358 A CYS 360 1_555 A CB CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? covale ? covale5 B NZ LYS 349 B LYS 351 1_555 P O2 PLM . B PLM 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale6 B CB CYS 358 B CYS 360 1_555 B SG CYS 367 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc1 A NZ LYS 197 A LYS 199 1_555 C FE1 6WF . A 6WF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc2 B NZ LYS 197 B LYS 199 1_555 J FE1 6WF . B 6WF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc3 B NE2 HIS 240 B HIS 242 1_555 J FE1 6WF . B 6WF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? # _chem_comp.formula 'C17 H18 Fe N3 O S' _chem_comp.formula_weight 368.254 _chem_comp.id 6WF _chem_comp.mon_nstd_flag . _chem_comp.name 14-piperidin-1-yl-11-oxa-13$l^{3}-thia-15,16$l^{4}-diaza-12$l^{3}-ferratetracyclo[8.7.0.0^{2,7}.0^{12,16}]heptadeca-1(10),2(7),3,5,8,13,16-heptaene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 6WF doub 1 n y C13 C16 6WF sing 2 n y C17 C22 6WF sing 3 n y C17 C16 6WF doub 4 n y C17 C18 6WF sing 5 n y C20 C21 6WF doub 6 n y C20 C19 6WF sing 7 n y C21 C16 6WF sing 8 n y C22 C23 6WF doub 9 n y N01 C02 6WF sing 10 n n C02 N03 6WF sing 11 n n C02 S09 6WF doub 12 n n N03 C04 6WF sing 13 n n N03 C08 6WF sing 14 n n C04 C05 6WF sing 15 n n C05 C06 6WF sing 16 n n C06 C07 6WF sing 17 n n C07 C08 6WF sing 18 n n S09 FE1 6WF sing 19 n n FE1 O11 6WF sing 20 n n FE1 N15 6WF sing 21 n n O11 C12 6WF sing 22 n n C12 C23 6WF sing 23 n y C14 N15 6WF doub 24 n n C18 C19 6WF doub 25 n y C20 H20 6WF sing 26 n n C21 H21 6WF sing 27 n n C22 H22 6WF sing 28 n n N01 H2 6WF sing 29 n n C04 H41 6WF sing 30 n n C04 H42 6WF sing 31 n n C05 H51 6WF sing 32 n n C05 H52 6WF sing 33 n n C06 H61 6WF sing 34 n n C06 H62 6WF sing 35 n n C07 H71 6WF sing 36 n n C07 H72 6WF sing 37 n n C08 H81 6WF sing 38 n n C08 H82 6WF sing 39 n n C14 H4 6WF sing 40 n n C18 H18 6WF sing 41 n n C19 H19 6WF sing 42 n n C23 H23 6WF sing 43 n n N01 N15 6WF sing 44 n n C13 C14 6WF sing 45 n n # _atom_sites.entry_id 5GIX _atom_sites.fract_transf_matrix[1][1] 0.025993 _atom_sites.fract_transf_matrix[1][2] 0.004989 _atom_sites.fract_transf_matrix[1][3] 0.001304 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010769 _atom_sites.fract_transf_matrix[2][3] 0.002917 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6WF A 1 601 1 6WF LIG . D 3 PLM A 1 602 1 PLM PLM . E 3 PLM A 1 603 2 PLM PLM . F 3 PLM A 1 604 3 PLM PLM . G 3 PLM A 1 605 4 PLM PLM . H 3 PLM A 1 606 5 PLM PLM . I 3 PLM A 1 607 6 PLM PLM . J 2 6WF B 1 601 2 6WF LIG . K 3 PLM B 1 602 7 PLM PLM . L 3 PLM B 1 603 8 PLM PLM . M 3 PLM B 1 604 9 PLM PLM . N 3 PLM B 1 605 10 PLM PLM . O 3 PLM B 1 606 11 PLM PLM . P 3 PLM B 1 607 12 PLM PLM . Q 4 HOH A 1 701 1 HOH HOH . Q 4 HOH A 2 702 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 6WF . . . C 2 -3.376 -8.888 8.148 1 42.66 ? C13 6WF 601 A 1 HETATM 2 C C17 6WF . . . C 2 -5.334 -8.92 9.482 1 45.87 ? C17 6WF 601 A 1 HETATM 3 C C20 6WF . . . C 2 -5.402 -11.707 9.384 1 48.41 ? C20 6WF 601 A 1 HETATM 4 C C21 6WF . . . C 2 -4.398 -11.006 8.726 1 43.86 ? C21 6WF 601 A 1 HETATM 5 C C22 6WF . . . C 2 -5.279 -7.392 9.52 1 80.49 ? C22 6WF 601 A 1 HETATM 6 N N01 6WF . . . C 2 -0.854 -9.286 4.857 1 170.24 ? N01 6WF 601 A 1 HETATM 7 C C02 6WF . . . C 2 0.545 -9.282 5.487 1 46.81 ? C02 6WF 601 A 1 HETATM 8 N N03 6WF . . . C 2 1.581 -9.933 4.733 1 48.43 ? N03 6WF 601 A 1 HETATM 9 C C04 6WF . . . C 2 1.006 -11.011 3.864 1 45.39 ? C04 6WF 601 A 1 HETATM 10 C C05 6WF . . . C 2 1.917 -11.593 2.82 1 39.55 ? C05 6WF 601 A 1 HETATM 11 C C06 6WF . . . C 2 3.281 -11.211 3.045 1 41.84 ? C06 6WF 601 A 1 HETATM 12 C C07 6WF . . . C 2 3.432 -9.739 3.098 1 49.48 ? C07 6WF 601 A 1 HETATM 13 C C08 6WF . . . C 2 2.407 -9.026 3.965 1 49.79 ? C08 6WF 601 A 1 HETATM 14 S S09 6WF . . . C 2 0.309 -7.487 5.852 1 90.43 ? S09 6WF 601 A 1 HETATM 15 FE FE1 6WF . . . C 2 -0.836 -7.729 7.081 1 223.05 ? FE1 6WF 601 A 1 HETATM 16 O O11 6WF . . . C 2 -2.249 -6.544 7.494 1 60.71 ? O11 6WF 601 A 1 HETATM 17 C C12 6WF . . . C 2 -3.28 -7.299 8.143 1 69.55 ? C12 6WF 601 A 1 HETATM 18 C C14 6WF . . . C 2 -2.214 -9.83 7.317 1 73.62 ? C14 6WF 601 A 1 HETATM 19 N N15 6WF . . . C 2 -1.642 -8.931 6.399 1 79.36 ? N15 6WF 601 A 1 HETATM 20 C C16 6WF . . . C 2 -4.375 -9.614 8.784 1 45.09 ? C16 6WF 601 A 1 HETATM 21 C C18 6WF . . . C 2 -6.339 -9.611 10.142 1 50.79 ? C18 6WF 601 A 1 HETATM 22 C C19 6WF . . . C 2 -6.386 -10.997 10.088 1 54.09 ? C19 6WF 601 A 1 HETATM 23 C C23 6WF . . . C 2 -4.227 -6.641 8.843 1 76.93 ? C23 6WF 601 A 1 HETATM 24 H H20 6WF . . . C 2 -5.424 -12.633 9.354 1 58.1 ? H20 6WF 601 A 1 HETATM 25 H H21 6WF . . . C 2 -3.743 -11.467 8.266 1 52.63 ? H21 6WF 601 A 1 HETATM 26 H H22 6WF . . . C 2 -5.934 -6.932 9.991 1 96.59 ? H22 6WF 601 A 1 HETATM 27 H H2 6WF . . . C 2 -1.106 -10.104 4.63 1 204.29 ? H2 6WF 601 A 1 HETATM 28 H H41 6WF . . . C 2 0.25 -10.663 3.383 1 54.47 ? H41 6WF 601 A 1 HETATM 29 H H42 6WF . . . C 2 0.713 -11.728 4.438 1 54.47 ? H42 6WF 601 A 1 HETATM 30 H H51 6WF . . . C 2 1.856 -12.554 2.842 1 47.46 ? H51 6WF 601 A 1 HETATM 31 H H52 6WF . . . C 2 1.649 -11.271 1.955 1 47.46 ? H52 6WF 601 A 1 HETATM 32 H H61 6WF . . . C 2 3.566 -11.59 3.883 1 50.21 ? H61 6WF 601 A 1 HETATM 33 H H62 6WF . . . C 2 3.82 -11.564 2.327 1 50.21 ? H62 6WF 601 A 1 HETATM 34 H H71 6WF . . . C 2 3.354 -9.4 2.195 1 59.38 ? H71 6WF 601 A 1 HETATM 35 H H72 6WF . . . C 2 4.313 -9.531 3.438 1 59.38 ? H72 6WF 601 A 1 HETATM 36 H H81 6WF . . . C 2 1.833 -8.489 3.401 1 59.75 ? H81 6WF 601 A 1 HETATM 37 H H82 6WF . . . C 2 2.879 -8.453 4.583 1 59.75 ? H82 6WF 601 A 1 HETATM 38 H H4 6WF . . . C 2 -2.645 -10.559 6.855 1 88.35 ? H4 6WF 601 A 1 HETATM 39 H H18 6WF . . . C 2 -6.991 -9.142 10.6 1 60.95 ? H18 6WF 601 A 1 HETATM 40 H H19 6WF . . . C 2 -7.058 -11.458 10.528 1 64.91 ? H19 6WF 601 A 1 HETATM 41 H H23 6WF . . . C 2 -4.212 -5.713 8.878 1 92.32 ? H23 6WF 601 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #